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asterix-gerrit.ics.uci.edu / hyracks / fd9b4b15a3d6e6cd2fd1d0f43cd290b28fd37436 / genomix / genomix-data
  1. b0e4fbc add test cases for removeBridge, removeTip and mergeBubble by AnbangX · 12 years ago
  2. cc77cf7 add test cases for path merge and other data clean patterns by AnbangX · 12 years ago
  3. 2c41eb3 add remove in PositionListWritable and test by AnbangX · 12 years ago
  4. 1e43ac4 Merge branch 'genomix/fullstack_genomix' of https://code.google.com/p/hyracks into jianfeng/genomix by Jianfeng Jia · 12 years ago
  5. 09cf1d1 facilitate better testing via more constructors and proper hashing/equals by Jake Biesinger · 12 years ago
  6. bc7e15f Merge branch 'genomix/fullstack_genomix' into jianfeng/genomix by Jianfeng Jia · 12 years ago
  7. bf8f525 Fix spelling by Jake Biesinger · 12 years ago
  8. 37cc20b hadoop graph building completion by Nan Zhang · 12 years ago
  9. eb8d72a Merge commit '951870ef4642f2003c4240eeef702fc90600fe77' into nanzhang/genomix by Nan Zhang · 12 years ago
  10. 3a26a3a merge with jianfeng-reverse by Nan Zhang · 12 years ago
  11. a591f26 clean up code and add copyright header by JavierJia · 12 years ago
  12. 12b4280 Merge branch 'jianfeng/genomix' into jianfeng/genomix-reverse by Jianfeng Jia · 12 years ago
  13. 5ba19e2 add more information for larger data debug by Jianfeng Jia · 12 years ago genomix/unidirection
  14. 562116a finished framework. not test yet by Jianfeng Jia · 12 years ago
  15. 8528899 finish framework by Jianfeng Jia · 12 years ago
  16. 5033f6f Update comment. by Jianfeng Jia · 12 years ago
  17. 587ddb7 finished merge pre and merge next test by Jianfeng Jia · 12 years ago
  18. 7f506a1 modify the DeepGraphBuildingMapper by Nan Zhang · 12 years ago
  19. 8663daa Merge branch 'nanzhang/genomix' into genomix/fullstack_genomix by Nan Zhang · 12 years ago
  20. 0669e98 add isPathNode to NodeWritable by Jake Biesinger · 12 years ago
  21. 7c14c8f Merge branch 'genomix/fullstack_genomix' of https://code.google.com/p/hyracks into jianfeng/genomix by Jianfeng Jia · 12 years ago
  22. 369fccb update the velvetGrapubuilding package by Nan Zhang · 12 years ago
  23. f14c403 add mergeNext function to kmerWritable by Jianfeng Jia · 12 years ago
  24. 7636684 refine the logic of generate Node by Jianfeng Jia · 12 years ago
  25. 103df19 Merge branch 'genomix/fullstack_genomix' of https://code.google.com/p/hyracks into genomix/fullstack_genomix by AnbangX · 12 years ago
  26. f5d6db9 change all input and output format to new version by AnbangX · 12 years ago
  27. c49ce70 add package to build old package success by Nan Zhang · 12 years ago
  28. 529a089 finished EndToEnd test by Jianfeng Jia · 12 years ago
  29. 80b312a passed map kmer to readid operator by Jianfeng Jia · 12 years ago
  30. ee2e038 finished test framework by JavierJia · 12 years ago
  31. c61eeb4 Merge branch 'genomix/fullstack_genomix' into genomix/velvet_graphbuilding by Nan Zhang · 12 years ago
  32. cfb8871 delete the genomic.data.experiments by Nan Zhang · 12 years ago
  33. 1d11e0a finish position test by JavierJia · 12 years ago
  34. 5d192ad finished genomix-hyracks end to end by JavierJia · 12 years ago
  35. e85c8a7 merge with hadoop code by JavierJia · 12 years ago
  36. ee1fa17 Merge branch 'genomix/velvet_graphbuilding' of https://code.google.com/p/hyracks into genomix/velvet_graphbuilding by JavierJia · 12 years ago
  37. fe1391a passed genomix-data test by JavierJia · 12 years ago
  38. e34200e create some writable based on Jianfeng's hyracks by Nan Zhang · 12 years ago
  39. ba0d0d8 clean up kmerWritable by JavierJia · 12 years ago
  40. 006ff46 new package for path merge by Nan Zhang · 12 years ago
  41. b52a13d new update for new version graph-building by Nan Zhang · 12 years ago
  42. db498da Merge branch 'genomix/fullstack_genomix' of https://code.google.com/p/hyracks into genomix/fullstack_genomix by AnbangX · 12 years ago
  43. e406bf5 add hyrack format by AnbangX · 12 years ago
  44. 0047d3c after code view h1 h2 update by Nan Zhang · 12 years ago
  45. c2aac14 new version of genomix graph building frameworks by Nan Zhang · 12 years ago
  46. 4c33a7a finished framework by JavierJia · 12 years ago
  47. 136c411 finish mapKmerToReadID by JavierJia · 12 years ago
  48. 9e6792f bump versions in poms by buyingyi · 12 years ago
  49. 4803aea compatible with invalid read by Jianfeng Jia · 12 years ago
  50. 0495424 supprt zero-length kmer setting by JavierJia · 12 years ago
  51. e83982b add clearLeadBit into KmerOperation by JavierJia · 12 years ago
  52. 3c3f2b7 Change return value of shiftKmer from bitmap to genecode by JavierJia · 12 years ago
  53. bc974c4 change comparitor by JavierJia · 12 years ago
  54. 25e22f1 add protect to array index overflow by JavierJia · 12 years ago
  55. 483934a add getSubKmer function by JavierJia · 12 years ago
  56. 0076326 add default empty constructor for hadoop version by JavierJia · 12 years ago
  57. 0a7f115 make genomix-hyracks pass the test by JavierJia · 12 years ago
  58. 2bfbe83 add back old version of Kmer to support genomix-pregelix by JavierJia · 12 years ago
  59. 0c37dd0 make genomix-hadoop genomix-hyracks compilable by JavierJia · 12 years ago
  60. be165dd split Kmer into fixsize Kmer and variablesize VKmer by JavierJia · 12 years ago
  61. 48a21c3 make genomix-data test passed by JavierJia · 12 years ago
  62. 3c5bd0a make genomix compile with merged hyracks by buyingyi · 12 years ago
  63. 6dbd752 merge fullstack_dynamic_deployment by buyingyi · 12 years ago
  64. e4d68f8 remove unrelated files by Jianfeng Jia · 12 years ago
  65. 97d4eed clear unset bit by Jianfeng Jia · 12 years ago
  66. 99641ad fix the bugs of mergeTwoKmer when nextK mod 4 == 0 by Jianfeng Jia · 12 years ago
  67. 74b72ca change fix bytes array to flexible bytes with offset and length in KmerUtil by jianfeng.jia@gmail.com · 12 years ago
  68. c410249 hadoop pathmerge h1 algorithm by zhangnan2920214@gmail.com · 12 years ago
  69. cdc5917 upload the graph of the test case by anbangx · 12 years ago
  70. 39e72c7 fix KmerUtil.mergeTwoKmer bug while merging 1byte nextKmer by jianfeng.jia@gmail.com · 12 years ago
  71. 4e57def add some comment on KmerUtil by jianfeng.jia@gmail.com · 12 years ago
  72. 14e6742 add shiftKmer into KmerUtil by jianfeng.jia@gmail.com · 12 years ago
  73. 4ead7d4 add convertion from bitmap to gencode by jianfeng.jia@gmail.com · 12 years ago
  74. 5842ee3 add KmerUtil for merge or join operation by jianfeng.jia@gmail.com · 12 years ago
  75. d5b6dc7 add reversed kmer option by jianfeng.jia@gmail.com · 12 years ago
  76. f1bf6d5 add timer by anbangx · 12 years ago
  77. ed8b8eb svn merge -r3112:3163 https://hyracks.googlecode.com/svn/branches/fullstack_asterix_stabilization svn merge -r3173:3188 https://hyracks.googlecode.com/svn/branches/fullstack_release_candidate@3234 svn merge -r3209:3233 https://hyracks.googlecode.com/svn/trunk/fullstack by anbangx · 12 years ago
  78. 904f363 refactor the kmer hash/partition/normarlized code by jianfeng.jia@gmail.com · 12 years ago
  79. 4604dee new genomix-data by zhangnan2920214@gmail.com · 12 years ago
  80. 7ed56e7 new genomix-data by zhangnan2920214@gmail.com · 12 years ago
  81. 6ed83cb fix sequecefile.reader problem by jianfeng.jia@gmail.com · 12 years ago
  82. 7b6a3c7 change to genomix-data by jianfeng.jia@gmail.com · 12 years ago