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asterix-gerrit.ics.uci.edu / hyracks / fd9b4b15a3d6e6cd2fd1d0f43cd290b28fd37436 / genomix
  1. fd9b4b1 correct p4 by AnbangX · 12 years ago
  2. 0d0e1fe some updates by AnbangX · 12 years ago
  3. ce47851 add p4 for path merge by AnbangX · 12 years ago
  4. 0c08e56 p3 path merge pass test by AnbangX · 12 years ago
  5. b0e4fbc add test cases for removeBridge, removeTip and mergeBubble by AnbangX · 12 years ago
  6. cc77cf7 add test cases for path merge and other data clean patterns by AnbangX · 12 years ago
  7. 2c41eb3 add remove in PositionListWritable and test by AnbangX · 12 years ago
  8. f60ef35 add test for graph build by AnbangX · 12 years ago
  9. 1e43ac4 Merge branch 'genomix/fullstack_genomix' of https://code.google.com/p/hyracks into jianfeng/genomix by Jianfeng Jia · 12 years ago
  10. acde177 add unmerged option in hyracks graph building by Jianfeng Jia · 12 years ago
  11. ec499a1 remove tips initial by Jake Biesinger · 12 years ago
  12. 82b237b Better testing for initial path merge by Jake Biesinger · 12 years ago
  13. 09cf1d1 facilitate better testing via more constructors and proper hashing/equals by Jake Biesinger · 12 years ago
  14. 90752e7 non-path nodes are pushed to "complete" output by Jake Biesinger · 12 years ago
  15. 0d3ec57 update data clean 2013-06-06 by AnbangX · 12 years ago
  16. fd8c69a update 2013-6-4 by Anbang Xu · 12 years ago
  17. 0ae1c4c add data clean by AnbangX · 12 years ago
  18. 57971b6 path node works for complex starts by Jake Biesinger · 12 years ago
  19. bc7e15f Merge branch 'genomix/fullstack_genomix' into jianfeng/genomix by Jianfeng Jia · 12 years ago
  20. 0e69045 change iterator to for loop to save time. by Jianfeng Jia · 12 years ago
  21. e0fa424 Update H4 to new graph style by Jake Biesinger · 12 years ago
  22. 5932b3b fix test case paths by Jake Biesinger · 12 years ago
  23. bf8f525 Fix spelling by Jake Biesinger · 12 years ago
  24. c49f7b9 add warning of huge overlap by Jianfeng Jia · 12 years ago
  25. 471f75c remove the "new" block. by Jianfeng Jia · 12 years ago
  26. 9ac3f6c reformat by Jake Biesinger · 12 years ago
  27. 03364d3 restore strangely deleted MergePaths code by Jake Biesinger · 12 years ago
  28. d91b4fb Fix H3 test case by Jake Biesinger · 12 years ago
  29. 5215ff5 Updated base class for tests allows mutliple Test cases by Jake Biesinger · 12 years ago
  30. 79da38a clean code by Nan Zhang · 12 years ago
  31. 5d3d527 delete he pcommon by Nan Zhang · 12 years ago
  32. 37cc20b hadoop graph building completion by Nan Zhang · 12 years ago
  33. e66c773 build graph by Nan Zhang · 12 years ago
  34. eb8d72a Merge commit '951870ef4642f2003c4240eeef702fc90600fe77' into nanzhang/genomix by Nan Zhang · 12 years ago
  35. 3a26a3a merge with jianfeng-reverse by Nan Zhang · 12 years ago
  36. 631482f add first small test case by AnbangX · 12 years ago
  37. 30f28d0 new code for bi-direction graph build by AnbangX · 12 years ago
  38. 3931ef7 Broke test cases into base class plus small tests by Jake Biesinger · 12 years ago
  39. a591f26 clean up code and add copyright header by JavierJia · 12 years ago
  40. bf9401e increase default frameSize to 128K by Jianfeng Jia · 12 years ago
  41. 8040709 add log to watch the tuple size by Jianfeng Jia · 12 years ago
  42. 12b4280 Merge branch 'jianfeng/genomix' into jianfeng/genomix-reverse by Jianfeng Jia · 12 years ago
  43. 5ba19e2 add more information for larger data debug by Jianfeng Jia · 12 years ago genomix/unidirection
  44. 8a50889 fix outputKmerFactory racing problem by Jianfeng Jia · 12 years ago
  45. 33dc862 fix debugNc script by JavierJia · 12 years ago
  46. dba2ebf Merge branch 'jianfeng/genomix' into jianfeng/genomix-reverse by Jianfeng Jia · 12 years ago
  47. 22616cf fixed the racing problem by Jianfeng Jia · 12 years ago
  48. e7b1730 Merge branch 'genomix/fullstack_bidirection' into jianfeng/genomix-reverse by Jianfeng Jia · 12 years ago
  49. edb2170 Merge branch 'wbiesing/genomix/h3' into jianfeng/genomix-reverse by Jake Biesinger · 12 years ago
  50. f8261bc Add a unit test for H3 which builds the graph by Jake Biesinger · 12 years ago
  51. d23e0a7 Merge commit 'aa985fe572d4a78aa904a6d8524df96ef29db7ea' into nanzhang/genomix by Nan Zhang · 12 years ago
  52. 9bc1c38 modify building by Nan Zhang · 12 years ago
  53. 763ee99 fix builder.reset bug by JavierJia · 12 years ago
  54. aa985fe Merge branch 'jianfeng/genomix' into jianfeng/genomix-reverse by Jianfeng Jia · 12 years ago
  55. 1f37dce fix builder.reset bug by JavierJia · 12 years ago
  56. 1d7de64 Merge branch 'jianfeng/genomix' into jianfeng/genomix-reverse by Jianfeng Jia · 12 years ago
  57. 923b215 Merge branch 'jianfeng/genomix' into genomix/fullstack_genomix by Jianfeng Jia · 12 years ago
  58. 1be1d3e fix binary format test by JavierJia · 12 years ago
  59. 6e8b44b change pom main class by Jianfeng Jia · 12 years ago
  60. bb2dd3f change main class by Jianfeng Jia · 12 years ago
  61. 48ef17c Merge branch 'jianfeng/genomix-reverse' into genomix/fullstack_genomix by Jianfeng Jia · 12 years ago
  62. f6640db Passed test by Jianfeng Jia · 12 years ago
  63. 562116a finished framework. not test yet by Jianfeng Jia · 12 years ago
  64. 8528899 finish framework by Jianfeng Jia · 12 years ago
  65. c2a055b new graph building progress by Nan Zhang · 12 years ago
  66. 006f744 Merge commit '983a7076e4b24cd421d16a3cd6987bc94275a2bc' into nanzhang/genomix by Nan Zhang · 12 years ago
  67. 1181e3c modify the driver of velvet_graphbuilding by Nan Zhang · 12 years ago
  68. 5033f6f Update comment. by Jianfeng Jia · 12 years ago
  69. 587ddb7 finished merge pre and merge next test by Jianfeng Jia · 12 years ago
  70. 7f506a1 modify the DeepGraphBuildingMapper by Nan Zhang · 12 years ago
  71. e215121 Merge branch 'nanzhang/genomix' into genomix/fullstack_genomix by Nan Zhang · 12 years ago
  72. b8ae860 modify the velvet-graph building package by Nan Zhang · 12 years ago
  73. 8663daa Merge branch 'nanzhang/genomix' into genomix/fullstack_genomix by Nan Zhang · 12 years ago
  74. d01123b Use different initial and subsequent mappers in H3 by Jake Biesinger · 12 years ago
  75. 01454bd H3 implemented, untested by Jake Biesinger · 12 years ago
  76. 0669e98 add isPathNode to NodeWritable by Jake Biesinger · 12 years ago
  77. d891139 WIP: H3 implementation, using multiple tails by Jake Biesinger · 12 years ago
  78. 7c14c8f Merge branch 'genomix/fullstack_genomix' of https://code.google.com/p/hyracks into jianfeng/genomix by Jianfeng Jia · 12 years ago
  79. 369fccb update the velvetGrapubuilding package by Nan Zhang · 12 years ago
  80. f14c403 add mergeNext function to kmerWritable by Jianfeng Jia · 12 years ago
  81. 7636684 refine the logic of generate Node by Jianfeng Jia · 12 years ago
  82. 103df19 Merge branch 'genomix/fullstack_genomix' of https://code.google.com/p/hyracks into genomix/fullstack_genomix by AnbangX · 12 years ago
  83. f5d6db9 change all input and output format to new version by AnbangX · 12 years ago
  84. 2c48b66 Merge branch 'nanzhang/genomix' into genomix/fullstack_genomix by Nan Zhang · 12 years ago
  85. c49ce70 add package to build old package success by Nan Zhang · 12 years ago
  86. a6e78ab do some changes to test git rebase by AnbangX · 12 years ago
  87. 529a089 finished EndToEnd test by Jianfeng Jia · 12 years ago
  88. 9804780 passed readid groupby test by Jianfeng Jia · 12 years ago
  89. 80b312a passed map kmer to readid operator by Jianfeng Jia · 12 years ago
  90. c2bb663 passed kmer groupby test by Jianfeng Jia · 12 years ago
  91. c5172dd reformat JobGen to avoid NonSerializable exception by Jianfeng Jia · 12 years ago
  92. ee2e038 finished test framework by JavierJia · 12 years ago
  93. 935f676 Merge branch 'genomix/velvet_graphbuilding' into genomix/fullstack_genomix by Jake Biesinger · 12 years ago
  94. b19726a change code format in p3 by AnbangX · 12 years ago genomix/pre-velvet-graph
  95. 6b03061 Merge branch 'genomix/fullstack_genomix' of https://code.google.com/p/hyracks into genomix/fullstack_genomix by Nan Zhang · 12 years ago
  96. 52a9b96 delete all experiments on fullstack_genomix by Nan Zhang · 12 years ago
  97. a688f7d change name of one package by Nan Zhang · 12 years ago
  98. c61eeb4 Merge branch 'genomix/fullstack_genomix' into genomix/velvet_graphbuilding by Nan Zhang · 12 years ago
  99. cfb8871 delete the genomic.data.experiments by Nan Zhang · 12 years ago
  100. 6b5f7a2 update the test to genomix-hyracks by JavierJia · 12 years ago