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hyracks
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ac6a090c8e6ee47cde23470dae4c614a2e299e02
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genomix
/
genomix-hyracks
/
src
0c644f4
Mapper passes test
by Anbang Xu
· 12 years ago
b14e7e6
Update for changing graph
by Anbang Xu
· 12 years ago
8dbe728
refactor 'size' to 'kmerByteSize' in KmerBytesWritable
by Anbang Xu
· 12 years ago
f7fc945
refactor 'UniqueKey' to 'NodeId'
by Anbang Xu
· 12 years ago
6350b0f
some changes in ParserFactory
by Anbang Xu
· 12 years ago
1a02870
add ReadsKeyValueParserFactory for new graph using for read HDFS
by Anbang Xu
· 12 years ago
871743c
add IntermediateNodeWritable and KmerListWritable
by Anbang Xu
· 12 years ago
c642eeb
new graph driver
by Anbang Xu
· 12 years ago
970c74f
move old key/value class to oldtype folder
by Anbang Xu
· 12 years ago
acde177
add unmerged option in hyracks graph building
by Jianfeng Jia
· 12 years ago
bc7e15f
Merge branch 'genomix/fullstack_genomix' into jianfeng/genomix
by Jianfeng Jia
· 12 years ago
0e69045
change iterator to for loop to save time.
by Jianfeng Jia
· 12 years ago
bf8f525
Fix spelling
by Jake Biesinger
· 12 years ago
c49f7b9
add warning of huge overlap
by Jianfeng Jia
· 12 years ago
471f75c
remove the "new" block.
by Jianfeng Jia
· 12 years ago
eb8d72a
Merge commit '951870ef4642f2003c4240eeef702fc90600fe77' into nanzhang/genomix
by Nan Zhang
· 12 years ago
3a26a3a
merge with jianfeng-reverse
by Nan Zhang
· 12 years ago
a591f26
clean up code and add copyright header
by JavierJia
· 12 years ago
bf9401e
increase default frameSize to 128K
by Jianfeng Jia
· 12 years ago
8040709
add log to watch the tuple size
by Jianfeng Jia
· 12 years ago
12b4280
Merge branch 'jianfeng/genomix' into jianfeng/genomix-reverse
by Jianfeng Jia
· 12 years ago
5ba19e2
add more information for larger data debug
by Jianfeng Jia
· 12 years ago
genomix/unidirection
8a50889
fix outputKmerFactory racing problem
by Jianfeng Jia
· 12 years ago
33dc862
fix debugNc script
by JavierJia
· 12 years ago
dba2ebf
Merge branch 'jianfeng/genomix' into jianfeng/genomix-reverse
by Jianfeng Jia
· 12 years ago
22616cf
fixed the racing problem
by Jianfeng Jia
· 12 years ago
763ee99
fix builder.reset bug
by JavierJia
· 12 years ago
aa985fe
Merge branch 'jianfeng/genomix' into jianfeng/genomix-reverse
by Jianfeng Jia
· 12 years ago
1f37dce
fix builder.reset bug
by JavierJia
· 12 years ago
1d7de64
Merge branch 'jianfeng/genomix' into jianfeng/genomix-reverse
by Jianfeng Jia
· 12 years ago
1be1d3e
fix binary format test
by JavierJia
· 12 years ago
f6640db
Passed test
by Jianfeng Jia
· 12 years ago
562116a
finished framework. not test yet
by Jianfeng Jia
· 12 years ago
8528899
finish framework
by Jianfeng Jia
· 12 years ago
f14c403
add mergeNext function to kmerWritable
by Jianfeng Jia
· 12 years ago
7636684
refine the logic of generate Node
by Jianfeng Jia
· 12 years ago
529a089
finished EndToEnd test
by Jianfeng Jia
· 12 years ago
9804780
passed readid groupby test
by Jianfeng Jia
· 12 years ago
80b312a
passed map kmer to readid operator
by Jianfeng Jia
· 12 years ago
c2bb663
passed kmer groupby test
by Jianfeng Jia
· 12 years ago
c5172dd
reformat JobGen to avoid NonSerializable exception
by Jianfeng Jia
· 12 years ago
ee2e038
finished test framework
by JavierJia
· 12 years ago
6b5f7a2
update the test to genomix-hyracks
by JavierJia
· 12 years ago
1d11e0a
finish position test
by JavierJia
· 12 years ago
5d192ad
finished genomix-hyracks end to end
by JavierJia
· 12 years ago
e85c8a7
merge with hadoop code
by JavierJia
· 12 years ago
fe1391a
passed genomix-data test
by JavierJia
· 12 years ago
ba0d0d8
clean up kmerWritable
by JavierJia
· 12 years ago
d158252
finish design of NodeReferenc API
by JavierJia
· 12 years ago
4c33a7a
finished framework
by JavierJia
· 12 years ago
136c411
finish mapKmerToReadID
by JavierJia
· 12 years ago
d061bf1
make hyracks test pass
by JavierJia
· 12 years ago
950d05e
add more testcase
by AnbangX
· 12 years ago
4803aea
compatible with invalid read
by Jianfeng Jia
· 12 years ago
3c3f2b7
Change return value of shiftKmer from bitmap to genecode
by JavierJia
· 12 years ago
6050d12
export JAVA_HOME in script while
by JavierJia
· 12 years ago
5393870
change script of starting hyracks
by jianfeng
· 12 years ago
0a7f115
make genomix-hyracks pass the test
by JavierJia
· 12 years ago
0c37dd0
make genomix-hadoop genomix-hyracks compilable
by JavierJia
· 12 years ago
3e9c53e
make genomix-hyracks test compilable
by JavierJia
· 12 years ago
3649da5
make genomix compile
by buyingyi
· 12 years ago
3c5bd0a
make genomix compile with merged hyracks
by buyingyi
· 12 years ago
cdc5917
upload the graph of the test case
by anbangx
· 12 years ago
d5b6dc7
add reversed kmer option
by jianfeng.jia@gmail.com
· 12 years ago
deb06a3
add -result-ip-address to script
by jianfeng.jia@gmail.com
· 12 years ago
3e17969
rewrite the DistributeAggeregator to not inherite from local
by jianfeng.jia@gmail.com
· 12 years ago
d29097f
fix typo in hash function
by jianfeng.jia@gmail.com
· 12 years ago
04f520c
simplify logic of normalization
by jianfeng.jia@gmail.com
· 12 years ago
e1f8249
fix normalized comparator
by jianfeng.jia@gmail.com
· 12 years ago
904f363
refactor the kmer hash/partition/normarlized code
by jianfeng.jia@gmail.com
· 12 years ago
2fc704b
fix comparator bug in VLongKmer
by jianfeng.jia@gmail.com
· 12 years ago
3ca6098
svn merge -r2972:3096 https://hyracks.googlecode.com/svn/branches/fullstack_asterix_stabilization
by jianfeng.jia@gmail.com
· 12 years ago
722dbb1
rebalance the partition
by jianfeng.jia@gmail.com
· 12 years ago
178b3e3
move negative handler back to partition
by jianfeng.jia@gmail.com
· 12 years ago
99e3c26
move the negative handler into the hashBytes() method
by jianfeng.jia@gmail.com
· 12 years ago
4f9bf96
change hash function
by jianfeng.jia@gmail.com
· 12 years ago
1186d5c
change hash function
by jianfeng.jia@gmail.com
· 12 years ago
6ed83cb
fix sequecefile.reader problem
by jianfeng.jia@gmail.com
· 12 years ago
7b6a3c7
change to genomix-data
by jianfeng.jia@gmail.com
· 12 years ago
8b059c0
split the genomix-core into genomix-core and genomix-hyracks
by jianfeng.jia@gmail.com
· 12 years ago