8b059c0a12642d78bb715f63603e989b91e75b02 - hyracks

commit	8b059c0a12642d78bb715f63603e989b91e75b02	[log] [tgz]
author	jianfeng.jia@gmail.com <jianfeng.jia@gmail.com@123451ca-8445-de46-9d55-352943316053>	Tue Mar 05 01:46:42 2013 +0000
committer	jianfeng.jia@gmail.com <jianfeng.jia@gmail.com@123451ca-8445-de46-9d55-352943316053>	Tue Mar 05 01:46:42 2013 +0000
tree	036bf1ebce946472fe8c26922dc23fa9c5187d24
parent	bf4043fc19473bb8381843c4028b96235fa1e86c [diff]

split the genomix-core into genomix-core and  genomix-hyracks

git-svn-id: https://hyracks.googlecode.com/svn/branches/fullstack_genomix@3029 123451ca-8445-de46-9d55-352943316053

genomix/genomix-core/pom.xml[diff]
genomix/genomix-core/src/main/java/edu/uci/ics/genomix/type/Kmer.java[diff]
genomix/genomix-core/src/main/java/edu/uci/ics/genomix/type/KmerCountValue.java[diff]
genomix/genomix-core/src/test/java/edu/uci/ics/genomix/example/kmer/KmerTest.java[Added - diff]
genomix/genomix-hyracks/HyracksCodeFormatProfile.xml[Added - diff]
genomix/genomix-hyracks/pom.xml[Added - diff]
genomix/genomix-hyracks/src/main/assembly/binary-assembly.xml[Added - diff]
genomix/genomix-hyracks/src/main/java/edu/uci/ics/genomix/data/normalizers/Integer64NormalizedKeyComputerFactory.java[Renamed from genomix/genomix-core/src/main/java/edu/uci/ics/genomix/data/normalizers/Integer64NormalizedKeyComputerFactory.java - diff]
genomix/genomix-hyracks/src/main/java/edu/uci/ics/genomix/data/normalizers/VLongNormalizedKeyComputerFactory.java[Renamed from genomix/genomix-core/src/main/java/edu/uci/ics/genomix/data/normalizers/VLongNormalizedKeyComputerFactory.java - diff]
genomix/genomix-hyracks/src/main/java/edu/uci/ics/genomix/data/partition/KmerHashPartitioncomputerFactory.java[Renamed from genomix/genomix-core/src/main/java/edu/uci/ics/genomix/data/partition/KmerHashPartitioncomputerFactory.java - diff]
genomix/genomix-hyracks/src/main/java/edu/uci/ics/genomix/data/serde/ByteSerializerDeserializer.java[Renamed from genomix/genomix-core/src/main/java/edu/uci/ics/genomix/data/serde/ByteSerializerDeserializer.java - diff]
genomix/genomix-hyracks/src/main/java/edu/uci/ics/genomix/data/std/accessors/LongBinaryHashFunctionFamily.java[Renamed from genomix/genomix-core/src/main/java/edu/uci/ics/genomix/data/std/accessors/LongBinaryHashFunctionFamily.java - diff]
genomix/genomix-hyracks/src/main/java/edu/uci/ics/genomix/data/std/accessors/LongHashFunctionFamily.java[Renamed from genomix/genomix-core/src/main/java/edu/uci/ics/genomix/data/std/accessors/LongHashFunctionFamily.java - diff]
genomix/genomix-hyracks/src/main/java/edu/uci/ics/genomix/data/std/accessors/MurmurHash3BinaryHashFunctionFamily.java[Renamed from genomix/genomix-core/src/main/java/edu/uci/ics/genomix/data/std/accessors/MurmurHash3BinaryHashFunctionFamily.java - diff]
genomix/genomix-hyracks/src/main/java/edu/uci/ics/genomix/data/std/accessors/VLongBinaryHashFunctionFamily.java[Renamed from genomix/genomix-core/src/main/java/edu/uci/ics/genomix/data/std/accessors/VLongBinaryHashFunctionFamily.java - diff]
genomix/genomix-hyracks/src/main/java/edu/uci/ics/genomix/data/std/primitive/VLongPointable.java[Renamed from genomix/genomix-core/src/main/java/edu/uci/ics/genomix/data/std/primitive/VLongPointable.java - diff]
genomix/genomix-hyracks/src/main/java/edu/uci/ics/genomix/dataflow/ConnectorPolicyAssignmentPolicy.java[Renamed from genomix/genomix-core/src/main/java/edu/uci/ics/genomix/dataflow/ConnectorPolicyAssignmentPolicy.java - diff]
genomix/genomix-hyracks/src/main/java/edu/uci/ics/genomix/dataflow/FileScanDescriptor.java[Renamed from genomix/genomix-core/src/main/java/edu/uci/ics/genomix/dataflow/FileScanDescriptor.java - diff]
genomix/genomix-hyracks/src/main/java/edu/uci/ics/genomix/dataflow/KMerSequenceWriterFactory.java[Renamed from genomix/genomix-core/src/main/java/edu/uci/ics/genomix/dataflow/KMerSequenceWriterFactory.java - diff]
genomix/genomix-hyracks/src/main/java/edu/uci/ics/genomix/dataflow/KMerTextWriterFactory.java[Renamed from genomix/genomix-core/src/main/java/edu/uci/ics/genomix/dataflow/KMerTextWriterFactory.java - diff]
genomix/genomix-hyracks/src/main/java/edu/uci/ics/genomix/dataflow/PrinterOperatorDescriptor.java[Renamed from genomix/genomix-core/src/main/java/edu/uci/ics/genomix/dataflow/PrinterOperatorDescriptor.java - diff]
genomix/genomix-hyracks/src/main/java/edu/uci/ics/genomix/dataflow/ReadsKeyValueParserFactory.java[Renamed from genomix/genomix-core/src/main/java/edu/uci/ics/genomix/dataflow/ReadsKeyValueParserFactory.java - diff]
genomix/genomix-hyracks/src/main/java/edu/uci/ics/genomix/dataflow/Tester.java[Renamed from genomix/genomix-core/src/main/java/edu/uci/ics/genomix/dataflow/Tester.java - diff]
genomix/genomix-hyracks/src/main/java/edu/uci/ics/genomix/dataflow/aggregators/DistributedMergeLmerAggregateFactory.java[Renamed from genomix/genomix-core/src/main/java/edu/uci/ics/genomix/dataflow/aggregators/DistributedMergeLmerAggregateFactory.java - diff]
genomix/genomix-hyracks/src/main/java/edu/uci/ics/genomix/dataflow/aggregators/MergeKmerAggregateFactory.java[Renamed from genomix/genomix-core/src/main/java/edu/uci/ics/genomix/dataflow/aggregators/MergeKmerAggregateFactory.java - diff]
genomix/genomix-hyracks/src/main/java/edu/uci/ics/genomix/dataflow/util/NonSyncWriter.java[Renamed from genomix/genomix-core/src/main/java/edu/uci/ics/genomix/dataflow/util/NonSyncWriter.java - diff]
genomix/genomix-hyracks/src/main/java/edu/uci/ics/genomix/driver/Driver.java[Renamed from genomix/genomix-core/src/main/java/edu/uci/ics/genomix/driver/Driver.java - diff]
genomix/genomix-hyracks/src/main/java/edu/uci/ics/genomix/job/GenomixJob.java[Renamed from genomix/genomix-core/src/main/java/edu/uci/ics/genomix/job/GenomixJob.java - diff]
genomix/genomix-hyracks/src/main/java/edu/uci/ics/genomix/job/JobGen.java[Renamed from genomix/genomix-core/src/main/java/edu/uci/ics/genomix/job/JobGen.java - diff]
genomix/genomix-hyracks/src/main/java/edu/uci/ics/genomix/job/JobGenBrujinGraph.java[Renamed from genomix/genomix-core/src/main/java/edu/uci/ics/genomix/job/JobGenBrujinGraph.java - diff]
genomix/genomix-hyracks/src/main/java/edu/uci/ics/genomix/job/JobGenContigsGeneration.java[Renamed from genomix/genomix-core/src/main/java/edu/uci/ics/genomix/job/JobGenContigsGeneration.java - diff]
genomix/genomix-hyracks/src/main/java/edu/uci/ics/genomix/job/JobGenGraphCleanning.java[Renamed from genomix/genomix-core/src/main/java/edu/uci/ics/genomix/job/JobGenGraphCleanning.java - diff]
genomix/genomix-hyracks/src/main/resources/conf/cluster.properties[Added - diff]
genomix/genomix-hyracks/src/main/resources/conf/debugnc.properties[Added - diff]
genomix/genomix-hyracks/src/main/resources/conf/master[Added - diff]
genomix/genomix-hyracks/src/main/resources/conf/slaves[Added - diff]
genomix/genomix-hyracks/src/main/resources/scripts/genomix[Added - diff]
genomix/genomix-hyracks/src/main/resources/scripts/genomix.bat[Added - diff]
genomix/genomix-hyracks/src/main/resources/scripts/getip.sh[Added - diff]
genomix/genomix-hyracks/src/main/resources/scripts/startAllNCs.sh[Added - diff]
genomix/genomix-hyracks/src/main/resources/scripts/startCluster.sh[Added - diff]
genomix/genomix-hyracks/src/main/resources/scripts/startDebugNc.sh[Added - diff]
genomix/genomix-hyracks/src/main/resources/scripts/startcc.sh[Added - diff]
genomix/genomix-hyracks/src/main/resources/scripts/startnc.sh[Added - diff]
genomix/genomix-hyracks/src/main/resources/scripts/stopAllNCs.sh[Added - diff]
genomix/genomix-hyracks/src/main/resources/scripts/stopCluster.sh[Added - diff]
genomix/genomix-hyracks/src/main/resources/scripts/stopcc.sh[Added - diff]
genomix/genomix-hyracks/src/main/resources/scripts/stopnc.sh[Added - diff]
genomix/genomix-hyracks/src/test/java/edu/uci/ics/genomix/example/jobrun/JobRunTest.java[Renamed from genomix/genomix-core/src/test/java/edu/uci/ics/genomix/example/jobrun/JobRunTestCase.java - diff]
genomix/genomix-hyracks/src/test/resources/data/0/text.txt[Added - diff]
genomix/genomix-hyracks/src/test/resources/data/webmap/text.txt[Added - diff]
genomix/genomix-hyracks/src/test/resources/expected/result2[Added - diff]
genomix/genomix-hyracks/src/test/resources/hadoop/conf/core-site.xml[Added - diff]
genomix/genomix-hyracks/src/test/resources/hadoop/conf/hdfs-site.xml[Added - diff]
genomix/genomix-hyracks/src/test/resources/hadoop/conf/log4j.properties[Added - diff]
genomix/genomix-hyracks/src/test/resources/hadoop/conf/mapred-site.xml[Added - diff]
genomix/pom.xml[diff]

57 files changed

tree: 036bf1ebce946472fe8c26922dc23fa9c5187d24