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asterix-gerrit.ics.uci.edu / hyracks / 41ffd05f113f3e86018d650243947a2d08b9bc82 / genomix / genomix-hadoop / src / test
  1. 4a9e45c Add testcases for SplitRepeat by Anbang Xu · 12 years ago
  2. d688b5a Add skip tandem repeat to pathmerge. TODO: detect cycle in pathmerge by Anbang Xu · 12 years ago
  3. 569945a add RF/FR with/without head test for pathmerge by Anbang Xu · 12 years ago
  4. 9ac0dda Modify mergeWithKmer to mergeWithNode by Anbang Xu · 12 years ago
  5. d06c50f add testcase for pathmerge by Anbang Xu · 12 years ago
  6. de3a280 Merge branch 'nanzhang/hyracks_genomix' into genomix/fullstack_genomix by Nan Zhang · 12 years ago
  7. df21153 complete hyracks graph building Junit4 Testing normalization by Nan Zhang · 12 years ago
  8. e7856d5 Adapt ScaffoldingVertex to new graph structure by Anbang Xu · 12 years ago
  9. 6212780 BTS almost done and wait for EdgeListWritable[dir].getReadIds(Key key) by Anbang Xu · 12 years ago
  10. 0217e7e Adapt SplitRepeatVertex to new graph structure. TODO: test AdjSplitRepeat by Anbang Xu · 12 years ago
  11. 977a413 Adapt BridgeAddVertex and BridgeRemoveVertex to new graph structure by Anbang Xu · 12 years ago
  12. 128eb0e Revert "update hyracks_genomix branch" by Nan Zhang · 12 years ago
  13. 9a664b7 update hyracks_genomix branch by Nan Zhang · 12 years ago
  14. 7401944 test cases again :) by Jake Biesinger · 12 years ago
  15. 585dbb5 fastq parser for hadoop graphbuild by Jake Biesinger · 12 years ago
  16. 202f2ab Hadoop graphbuild uses filename for mateid; tests by Jake Biesinger · 12 years ago
  17. 2d17c5b Complete the Graph construction(Hadoop) by Anbang Xu · 12 years ago
  18. e73873e merge with new argmented graph by Anbang Xu · 12 years ago
  19. 14df82f Merge branch 'nanzhang/hyracks_genomix' into genomix/fullstack_genomix by Nan Zhang · 12 years ago
  20. 13348bf Graph construcion is completed by Anbang Xu · 12 years ago
  21. bb8e581 Complete NaiveBFSTraverse and make more test cases by Anbang Xu · 12 years ago
  22. d282e07 argumented graph building pass test successfully by Nan Zhang · 12 years ago
  23. 52bda5c add new graph result to PathMergeTestSet by Anbang Xu · 12 years ago
  24. be39f91 Add AverageCoverage to graph construction(hadoop) and make graphviz more pretty by Anbang Xu · 12 years ago
  25. ac6b1a6 RemoveBridge pass test and add RemoveLowCoverage and Scaffolding by Anbang Xu · 12 years ago
  26. 4a5ee49 Hadoop TestSuite is completed and P2 pass test by Anbang Xu · 12 years ago
  27. 18c032a make TestSuite for graph building(hadoop) by Anbang Xu · 12 years ago
  28. 19b758e ervoer testUtils by Nan Zhang · 12 years ago
  29. 931fcc8 clean genomixMiniCluster by Nan Zhang · 12 years ago
  30. 3e3144b cleanning continue by Nan Zhang · 12 years ago
  31. 7dc9400 clean the useless code for project by Nan Zhang · 12 years ago
  32. 6981f1c adapt graph construction(hadoop) to VKmer by Anbang Xu · 12 years ago
  33. 95c432c BridgeAddVertex pass test by Anbang Xu · 12 years ago
  34. aac7732 SimpleSplitRepeat is completed. An issue in graph building(hadoop): KmerList.appendList() doesn't check existed element by Anbang Xu · 12 years ago
  35. 0049eac refactor 'NaiveAlgorithm' to 'P1' and add test case for SplitRepeat by Anbang Xu · 12 years ago
  36. a5e97c7 p4 pass test by Anbang Xu · 12 years ago
  37. 4416d3c debugging p4 by Anbang Xu · 12 years ago
  38. 84e385f Try to add globe kmerSize but fail in testing by Anbang Xu · 12 years ago
  39. bcf5a70 add hadoop test and keep both bin and txt by Anbang Xu · 12 years ago
  40. f7a23e4 add Reducer and change PositionWritable to PositionListWritable in NodeWritable by Anbang Xu · 12 years ago
  41. 0c644f4 Mapper passes test by Anbang Xu · 12 years ago
  42. 3335bb6 hadoop for contrail graph by Anbang Xu · 12 years ago
  43. 8dbe728 refactor 'size' to 'kmerByteSize' in KmerBytesWritable by Anbang Xu · 12 years ago
  44. 6b45971 Fix H4, test templates by Jake Biesinger · 12 years ago
  45. 76b3277 Merge branch 'genomix/fullstack_genomix' of https://code.google.com/p/hyracks into genomix/fullstack_genomix by Anbang Xu · 12 years ago
  46. f947fb8 add test suite case for removetip/removebridge/pathmerge by Anbang Xu · 12 years ago
  47. 54f79fb add expected output for pathmerge (singleread) by Jake Biesinger · 12 years ago
  48. fb347c0 Add test cases as input graphs by Jake Biesinger · 12 years ago
  49. 8f719e0 Use BuildAllGraphs by Jake Biesinger · 12 years ago
  50. d8f5c89 Formulate test code by Anbang Xu · 12 years ago
  51. 48c0cec q by Jake Biesinger · 12 years ago
  52. b679646 Add more test cases for path merge by Jake Biesinger · 12 years ago
  53. ac4a3fb add script for simple random read generation by Jake Biesinger · 12 years ago
  54. 4bb565e use argparse for python plotting by Jake Biesinger · 12 years ago
  55. 67e67aa more test cases by Jake Biesinger · 12 years ago
  56. c408358 Add python script for visualizing graphs by Jacob Biesinger · 12 years ago
  57. 8eac65c Add data for few test cases by Jake Biesinger · 12 years ago
  58. 0fd527e Merge branch 'genomix/fullstack_genomix' of https://code.google.com/p/hyracks into genomix/fullstack_genomix by Jake Biesinger · 12 years ago
  59. 8c8f194 test cases by Jake Biesinger · 12 years ago
  60. 5c31812 Add expected outputs for a few simple tests by Jake Biesinger · 12 years ago
  61. 15d0a8f Add sequences for simple test cases by Jake Biesinger · 12 years ago
  62. 8e4fbc3 test cases and fixes for H4 by Jake Biesinger · 12 years ago
  63. 3cda435 Remove tests using MRUnit (whose old API doesn't work with MultipleOutputs) by Jake Biesinger · 12 years ago
  64. 1f0b7d5 refactor MergePaths message types to use directions and message types by Jake Biesinger · 12 years ago
  65. 1920264 refactor: MessageFlag is now MergeMessageFlag by Jake Biesinger · 12 years ago
  66. 7c1d870 H4 driver works with multipleOutputs by Jake Biesinger · 12 years ago
  67. 86e8c3a simplify driver and test case for h4 graph building by Jake Biesinger · 12 years ago
  68. c0e90ce simplify hadoop graphbuilding test case by Jake Biesinger · 12 years ago
  69. 82b237b Better testing for initial path merge by Jake Biesinger · 12 years ago
  70. e0fa424 Update H4 to new graph style by Jake Biesinger · 12 years ago
  71. 5932b3b fix test case paths by Jake Biesinger · 12 years ago
  72. 9ac3f6c reformat by Jake Biesinger · 12 years ago
  73. d91b4fb Fix H3 test case by Jake Biesinger · 12 years ago
  74. 5215ff5 Updated base class for tests allows mutliple Test cases by Jake Biesinger · 12 years ago
  75. 79da38a clean code by Nan Zhang · 12 years ago
  76. 5d3d527 delete he pcommon by Nan Zhang · 12 years ago
  77. 37cc20b hadoop graph building completion by Nan Zhang · 12 years ago
  78. 3931ef7 Broke test cases into base class plus small tests by Jake Biesinger · 12 years ago
  79. e7b1730 Merge branch 'genomix/fullstack_bidirection' into jianfeng/genomix-reverse by Jianfeng Jia · 12 years ago
  80. f8261bc Add a unit test for H3 which builds the graph by Jake Biesinger · 12 years ago
  81. c2a055b new graph building progress by Nan Zhang · 12 years ago
  82. 1181e3c modify the driver of velvet_graphbuilding by Nan Zhang · 12 years ago
  83. c49ce70 add package to build old package success by Nan Zhang · 12 years ago
  84. 006ff46 new package for path merge by Nan Zhang · 12 years ago
  85. b1ee50c merge path update by Nan Zhang · 12 years ago
  86. 0047d3c after code view h1 h2 update by Nan Zhang · 12 years ago
  87. c9d802a Remove mac .DS_Store files and ignore them in the future. by Jake Biesinger · 12 years ago
  88. dbc32ae adjust h1 code by hadoop · 12 years ago
  89. 42a210a change new name for hadoop program by hadoop · 12 years ago
  90. dfd15e1 change the test name by hadoop · 12 years ago
  91. a3a8958 new h2 modified by hadoop · 12 years ago
  92. 5f3fce8 deleted all actual file by hadoop · 12 years ago
  93. c07f6bf new h2 by hadoop · 12 years ago
  94. 8824dde Merge branch 'fullstack_genomix' of https://code.google.com/p/hyracks into fullstack_genomix by hadoop · 12 years ago
  95. 3c3f2b7 Change return value of shiftKmer from bitmap to genecode by JavierJia · 12 years ago
  96. 00f6336 h2h2 by hadoop · 12 years ago
  97. 99f0202 Please enter the commit message for your changes. Lines starting by hadoop · 12 years ago
  98. 4163db2 h1 changes by hadoop · 12 years ago
  99. 0c37dd0 make genomix-hadoop genomix-hyracks compilable by JavierJia · 12 years ago
  100. 8a89876 hadoop pathmerge h1 algorithm by zhangnan2920214@gmail.com · 12 years ago