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asterix-gerrit.ics.uci.edu / hyracks / 41ffd05f113f3e86018d650243947a2d08b9bc82
  1. 41ffd05 Merge with main branch by Anbang Xu · 12 years ago
  2. 4a9e45c Add testcases for SplitRepeat by Anbang Xu · 12 years ago
  3. 6aae1de don't use root HDFS path by Jake Biesinger · 12 years ago
  4. 8270c5a Merge cycle to a single node in path merge. P4 test is completed by Anbang Xu · 12 years ago
  5. 4c7fca6 add hadoop conf into the genomix-hyracks scripts by Nan Zhang · 12 years ago
  6. d688b5a Add skip tandem repeat to pathmerge. TODO: detect cycle in pathmerge by Anbang Xu · 12 years ago
  7. 971c984 genomix driver actually uses cmdline args by Jake Biesinger · 12 years ago
  8. b2d89d1 remove junit and pmcommon dependencies by Jake Biesinger · 12 years ago
  9. 74dd489 fix appassembler for pregelix by Jake Biesinger · 12 years ago
  10. 3038537 appassembler for genomix driver by Jake Biesinger · 12 years ago
  11. adac3ef modify path for static test in driver by Jake Biesinger · 12 years ago
  12. 87b679f Merge branch 'anbangx/fullstack_genomix' into wbiesing/driver by Jake Biesinger · 12 years ago
  13. 2f3e3bb PathMerge pass test except TandemRepeat. TODO: skip TandemRepeat in pathmerge by Anbang Xu · 12 years ago
  14. 03434ff add hyracks-built graph as a pregelix test case by Jake Biesinger · 12 years ago
  15. 6c997b7 Fix kmer used in minicluster by Jake Biesinger · 12 years ago
  16. c9fe0a9 driver adapts to build output (InitialGraphInputFormat) by Jake Biesinger · 12 years ago
  17. 9c01d09 Fix mergeReadID RF and RR by Jake Biesinger · 12 years ago
  18. 569945a add RF/FR with/without head test for pathmerge by Anbang Xu · 12 years ago
  19. 1e86fe0 choose the unmerge_graphbuilding for genomix-driver by Nan Zhang · 12 years ago
  20. 7a75b07 add updateEdges for pathmerge. Issue: mergeWithStartreads by Anbang Xu · 12 years ago
  21. 9ac0dda Modify mergeWithKmer to mergeWithNode by Anbang Xu · 12 years ago
  22. 909de70 Merge branch 'master' into genomix/fullstack_genomix by Nan Zhang · 12 years ago
  23. 2e92709 remove bogus reference to com.sun.tools.javac.util.List by Jake Biesinger · 12 years ago
  24. 6fc84f1 Add additional merge info to pathmerge by Anbang Xu · 12 years ago
  25. d06c50f add testcase for pathmerge by Anbang Xu · 12 years ago
  26. fea8393 add unrollTandem to driver by Jake Biesinger · 12 years ago
  27. bb9901e re-remove nodes cleared out of Anbang's branch by Jake Biesinger · 12 years ago
  28. 5894562 GenomixDriver uses simpler pipeline builder by Jake Biesinger · 12 years ago
  29. b7d6d4f add convenience functions for new Jobs in genomix-pregelix operators by Jake Biesinger · 12 years ago
  30. d4fa74b Driver can run pregelix or Hyracks jobs locally by Jake Biesinger · 12 years ago
  31. 2accbdf remove constants from new pregelix code by Jake Biesinger · 12 years ago
  32. 58a483d remove old config files by Jake Biesinger · 12 years ago
  33. 06b3fa5 fix jobGenDebruijnGraph output format by Jake Biesinger · 12 years ago
  34. b1d8071 GenomixDriver: hryacks runs but can't find input by Jake Biesinger · 12 years ago
  35. 6eade1d use local test cluster by Jake Biesinger · 12 years ago
  36. 639c806 separate config from driver and pipeline setup by Jake Biesinger · 12 years ago
  37. 11c499b Add license header by Jake Biesinger · 12 years ago
  38. 1aad534 Update GenomixJobConf: must specify the kmerLength, extends JobConf by Jake Biesinger · 12 years ago
  39. 4f05864 Refactor configuration for all jobs into global GenomixJobConf by Jake Biesinger · 12 years ago
  40. 56e291f Merge branch 'anbangx/fullstack_genomix' into genomix/fullstack_genomix by Anbang Xu · 12 years ago
  41. ced394a Make pathmerge robost by Anbang Xu · 12 years ago
  42. ca15771 UnrollTandemRepeat is completed by Anbang Xu · 12 years ago
  43. b37b705 Add UnRollTandemRepeat. TODO: add the corresponding MSG and update edges by Anbang Xu · 12 years ago
  44. fc7d4b8 fix the positionWritable unionUpdate(), and add automatic test case by Nan Zhang · 12 years ago
  45. a81ddbc clean up the checkpointing control by buyingyi · 12 years ago
  46. 225a9dc Merge branch 'master' into yingyi/fullstack_fix by buyingyi · 12 years ago
  47. 15e90bb fix test jobs by buyingyi · 12 years ago
  48. 0a23941 print the full stack trace when failures propagate to pregelix driver by buyingyi · 12 years ago
  49. c900686 Merge branch 'yingyi/fullstack_fix' of https://code.google.com/p/hyracks into yingyi/fullstack_fix by buyingyi · 12 years ago
  50. 204eda8 implemented checkpoint read by buyingyi · 12 years ago
  51. 6efa434 Completed P2 debugging by Anbang Xu · 12 years ago
  52. c00e007 add graphviz by Nan Zhang · 12 years ago
  53. 78e8552 Merge branch 'salsubaiee/master_flush_frames_in_feeds_rapidly' by salsubaiee · 12 years ago
  54. 5b061f3 Removed uneeded check. by salsubaiee · 12 years ago
  55. e3351ad avoid hidden error message by sigmod · 12 years ago
  56. a4e850d add license header for hyracks by Nan Zhang · 12 years ago
  57. ca84702 Merge branch 'anbangx/fullstack_genomix' into genomix/fullstack_genomix by Anbang Xu · 12 years ago
  58. a3c0538 Clean up P2 code and prepare to deep debug it by Anbang Xu · 12 years ago
  59. feec5be Fix BubbleMerge by Anbang Xu · 12 years ago
  60. de3a280 Merge branch 'nanzhang/hyracks_genomix' into genomix/fullstack_genomix by Nan Zhang · 12 years ago
  61. 15306ff small modification by Nan Zhang · 12 years ago
  62. 4903be0 add expected file by Nan Zhang · 12 years ago
  63. 5e01f76 Adapt RemoveLowCoverageVertex to new graph structure. Finally, all the patterns are adapted to new graph by Anbang Xu · 12 years ago
  64. df21153 complete hyracks graph building Junit4 Testing normalization by Nan Zhang · 12 years ago
  65. e7856d5 Adapt ScaffoldingVertex to new graph structure by Anbang Xu · 12 years ago
  66. c970d65 Adapt BTSTraverseVertex to new graph structure by Anbang Xu · 12 years ago
  67. bca89a6 Make sure we flush a frame if there is only a single tuple. by salsubaiee · 12 years ago
  68. 000fa26 getReadIDs added to EdgeWritable by Jake Biesinger · 12 years ago
  69. 6212780 BTS almost done and wait for EdgeListWritable[dir].getReadIds(Key key) by Anbang Xu · 12 years ago
  70. 0217e7e Adapt SplitRepeatVertex to new graph structure. TODO: test AdjSplitRepeat by Anbang Xu · 12 years ago
  71. 37a8489 Adapt MergeBubbleVertex to new graph structure. TODO: check if bubble flip and merge all metadata except kmer by Anbang Xu · 12 years ago
  72. c69d141 Add node to BubbleMessage by Anbang Xu · 12 years ago
  73. 14de2c6 save current state by Anbang Xu · 12 years ago
  74. 977a413 Adapt BridgeAddVertex and BridgeRemoveVertex to new graph structure by Anbang Xu · 12 years ago
  75. 4370b2b adapt TipAddVertex and TipRemoveVertex to new graph structure by Anbang Xu · 12 years ago
  76. 112cdf7 Adapt MapReduceVertex and P4 to new graph structure by Anbang Xu · 12 years ago
  77. e7885ee Pregel TestSuite is completed by Anbang Xu · 12 years ago
  78. 0e037c1 Prepare to clean up pregel testSuite by Anbang Xu · 12 years ago
  79. 6f88379 save current state and prepare to clean up hadoop test result by Anbang Xu · 12 years ago
  80. 5d431a1 temporary save modified state by Anbang Xu · 12 years ago
  81. 3786935 hyracks graph building test complete. by Nan Zhang · 12 years ago
  82. b02033e BasicPathMergeVertex is completed by Anbang Xu · 12 years ago
  83. 3507013 add vertex checkpointing support by buyingyi · 12 years ago
  84. 0d72095 Make generic message class for all patterns by Anbang Xu · 12 years ago
  85. 128eb0e Revert "update hyracks_genomix branch" by Nan Zhang · 12 years ago
  86. 9a664b7 update hyracks_genomix branch by Nan Zhang · 12 years ago
  87. a5a1e63 Make basic msg class: MessageWritable and subclasses: PathMergeMessage, BubbleMergeMessage, BFSMessage by Anbang Xu · 12 years ago
  88. 7401944 test cases again :) by Jake Biesinger · 12 years ago
  89. 585dbb5 fastq parser for hadoop graphbuild by Jake Biesinger · 12 years ago
  90. 6bdf197 add EdgeList[dir].getKeys() by Anbang Xu · 12 years ago
  91. 92736c7 avoid btree update code path when the target entry has sufficient space by buyingyi · 12 years ago
  92. 58875bf delete SelfPath.txt~ by Anbang Xu · 12 years ago
  93. 9296bb6 Add EdgeList.getKeys for iterating over keys by Jake Biesinger · 12 years ago
  94. 202f2ab Hadoop graphbuild uses filename for mateid; tests by Jake Biesinger · 12 years ago
  95. 6266614 Simplify edgewritable interface by Jake Biesinger · 12 years ago
  96. 2d17c5b Complete the Graph construction(Hadoop) by Anbang Xu · 12 years ago
  97. 60782f4 Add test cases; reinstate compareTo function use Hadoop's version by Jake Biesinger · 12 years ago
  98. 35875ce removed cursed autogen stub that was breaking hadoop by Jake Biesinger · 12 years ago
  99. e73873e merge with new argmented graph by Anbang Xu · 12 years ago
  100. dfd2e0f added shallower interface for readIDs by Jake Biesinger · 12 years ago