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asterix-gerrit.ics.uci.edu / hyracks / 35ea519ff97fbf818b1a7bd003bf842952e0336d / genomix
  1. 35ea519 Merge branch 'fullstack_genomix' of https://code.google.com/p/hyracks into fullstack_genomix by JavierJia · 12 years ago
  2. 3e9c53e make genomix-hyracks test compilable by JavierJia · 12 years ago
  3. 9d5de1e add num-iteration by anbangx · 12 years ago
  4. 3649da5 make genomix compile by buyingyi · 12 years ago
  5. 3c5bd0a make genomix compile with merged hyracks by buyingyi · 12 years ago
  6. 6dbd752 merge fullstack_dynamic_deployment by buyingyi · 12 years ago
  7. 952fac1 fix the bug of naive algorithm by anbangx · 12 years ago
  8. f27bac6 delete unuse class by anbangx · 12 years ago
  9. c07e482 delete unuse function by anbangx · 12 years ago
  10. e4d68f8 remove unrelated files by Jianfeng Jia · 12 years ago
  11. 97d4eed clear unset bit by Jianfeng Jia · 12 years ago
  12. 99641ad fix the bugs of mergeTwoKmer when nextK mod 4 == 0 by Jianfeng Jia · 12 years ago
  13. 74b72ca change fix bytes array to flexible bytes with offset and length in KmerUtil by jianfeng.jia@gmail.com · 12 years ago
  14. 235b476 change some code to rugular output format by anbangx · 12 years ago
  15. 8a89876 hadoop pathmerge h1 algorithm by zhangnan2920214@gmail.com · 12 years ago
  16. c410249 hadoop pathmerge h1 algorithm by zhangnan2920214@gmail.com · 12 years ago
  17. 8f7f606 delete log by anbangx · 12 years ago
  18. db6e5de change code format by anbangx · 12 years ago
  19. cdc5917 upload the graph of the test case by anbangx · 12 years ago
  20. b7c1b11 Finish verifying the correctness of Naive Algorithm and Log Algorithm by anbangx · 12 years ago
  21. 39e72c7 fix KmerUtil.mergeTwoKmer bug while merging 1byte nextKmer by jianfeng.jia@gmail.com · 12 years ago
  22. 4e57def add some comment on KmerUtil by jianfeng.jia@gmail.com · 12 years ago
  23. 172a7dd change code structure by anbangx · 12 years ago
  24. 14e6742 add shiftKmer into KmerUtil by jianfeng.jia@gmail.com · 12 years ago
  25. 4ead7d4 add convertion from bitmap to gencode by jianfeng.jia@gmail.com · 12 years ago
  26. 8af245b change code format of LoadVertex, MessageWritable by anbangx · 12 years ago
  27. f5ff29d change folder name to edu.uci.ics.genomix.pregelix by anbangx · 12 years ago
  28. 5842ee3 add KmerUtil for merge or join operation by jianfeng.jia@gmail.com · 12 years ago
  29. 9ce8742 change code format of naive algorithm and delete some extra test code by anbangx · 12 years ago
  30. d5b6dc7 add reversed kmer option by jianfeng.jia@gmail.com · 12 years ago
  31. dc6c4d6 add client/drive by anbangx · 12 years ago
  32. 8e25fd9 add client/drive and some test files by anbangx · 12 years ago
  33. c670a80 add binary-assembly.xml by anbangx · 12 years ago
  34. deb06a3 add -result-ip-address to script by jianfeng.jia@gmail.com · 12 years ago
  35. f5eb8b7 some modified by anbangx · 12 years ago
  36. f1bf6d5 add timer by anbangx · 12 years ago
  37. 13a3f73 update JobFile by anbangx · 12 years ago
  38. 5af2665 add generateJob by anbangx · 12 years ago
  39. ddecfcb add test code by anbangx · 12 years ago
  40. e125a7e add small data file by anbangx · 12 years ago
  41. 69e64e4 ADD generateSmallFile.java by anbangx · 12 years ago
  42. 3e17969 rewrite the DistributeAggeregator to not inherite from local by jianfeng.jia@gmail.com · 12 years ago
  43. d29097f fix typo in hash function by jianfeng.jia@gmail.com · 12 years ago
  44. 04f520c simplify logic of normalization by jianfeng.jia@gmail.com · 12 years ago
  45. ac06a8a update by anbangx · 12 years ago
  46. aa919f9 add topology.xml by anbangx · 12 years ago
  47. ed8b8eb svn merge -r3112:3163 https://hyracks.googlecode.com/svn/branches/fullstack_asterix_stabilization svn merge -r3173:3188 https://hyracks.googlecode.com/svn/branches/fullstack_release_candidate@3234 svn merge -r3209:3233 https://hyracks.googlecode.com/svn/trunk/fullstack by anbangx · 12 years ago
  48. b9dd63c update by anbangx · 12 years ago
  49. e1f8249 fix normalized comparator by jianfeng.jia@gmail.com · 12 years ago
  50. 904f363 refactor the kmer hash/partition/normarlized code by jianfeng.jia@gmail.com · 12 years ago
  51. cf3b91e update by anbangx · 12 years ago
  52. 2fc704b fix comparator bug in VLongKmer by jianfeng.jia@gmail.com · 12 years ago
  53. fa8ddab add test by anbangx · 12 years ago
  54. 562c2fc by anbangx · 12 years ago
  55. 322e6d6 update by anbangx · 12 years ago
  56. 2e1af00 add a folder to store test file by anbangx · 12 years ago
  57. dd49ed0 delete old file by anbangx · 12 years ago
  58. a1bb02a add test file by anbangx · 12 years ago
  59. b82f054 Update by anbangx · 12 years ago
  60. 3ca6098 svn merge -r2972:3096 https://hyracks.googlecode.com/svn/branches/fullstack_asterix_stabilization by jianfeng.jia@gmail.com · 12 years ago
  61. 722dbb1 rebalance the partition by jianfeng.jia@gmail.com · 12 years ago
  62. 4604dee new genomix-data by zhangnan2920214@gmail.com · 12 years ago
  63. 7ed56e7 new genomix-data by zhangnan2920214@gmail.com · 12 years ago
  64. 96f2a1f merge with genomix-data by zhangnan2920214@gmail.com · 12 years ago
  65. 648cedf Update LogAlgorithm for merging graph by anbangx · 12 years ago
  66. 178b3e3 move negative handler back to partition by jianfeng.jia@gmail.com · 12 years ago
  67. 99e3c26 move the negative handler into the hashBytes() method by jianfeng.jia@gmail.com · 12 years ago
  68. 4f9bf96 change hash function by jianfeng.jia@gmail.com · 12 years ago
  69. 1186d5c change hash function by jianfeng.jia@gmail.com · 12 years ago
  70. 6ed83cb fix sequecefile.reader problem by jianfeng.jia@gmail.com · 12 years ago
  71. 7b6a3c7 change to genomix-data by jianfeng.jia@gmail.com · 12 years ago
  72. 8b059c0 split the genomix-core into genomix-core and genomix-hyracks by jianfeng.jia@gmail.com · 12 years ago
  73. bf4043f release dependent on pregelix-core by jianfeng.jia@gmail.com · 12 years ago
  74. 5b66000 change back to SequenceFile.Writer by jianfeng.jia@gmail.com · 12 years ago
  75. 5962a37 Update MergeGraph by anbangx · 12 years ago
  76. 2a9dfb1 change to nonsyncwriter by jianfeng.jia@gmail.com · 12 years ago
  77. 0a39165 change the bytebuffer function in MergeKmerAggregator by jianfeng.jia@gmail.com · 12 years ago
  78. af696a4 revise Tester by jianfeng.jia@gmail.com · 12 years ago
  79. 7dda527 recover Tesert to 4thread by jianfeng.jia@gmail.com · 12 years ago
  80. 9bcc321 Add setFrameSize; refine test cases by jianfeng.jia@gmail.com · 12 years ago
  81. 61a9939 remove new from KMerSequenceWriter by jianfeng.jia@gmail.com · 12 years ago
  82. 895384a rm genomix-hadoop target by jianfeng.jia@gmail.com · 12 years ago
  83. 4256e82 source setInputPath|outputPath by jianfeng.jia@gmail.com · 12 years ago
  84. 100f303 change to Jobconf by jianfeng.jia@gmail.com · 12 years ago
  85. ba2606f text output test pass by jianfeng.jia@gmail.com · 12 years ago
  86. 6debc77 rewrite kmer representation by jianfeng.jia@gmail.com · 12 years ago
  87. 19b44c6 fix the issue of same recordoutputDescriptor by jianfeng.jia@gmail.com · 12 years ago
  88. 56a0969 the cluster version by zhangnan2920214@gmail.com · 12 years ago
  89. 6be6225 the cluster version by zhangnan2920214@gmail.com · 12 years ago
  90. 8694624 unified readeroperator by Kmer util by jianfeng.jia@gmail.com · 12 years ago
  91. e2cb8f6 add valuewritable by zhangnan2920214@gmail.com · 12 years ago
  92. 7a14a81 Modify to SequenceFile by anbangx · 12 years ago
  93. a01144c Gnomix updated by whongzhi@gmail.com · 12 years ago
  94. cf793ad sequential file format by zhangnan2920214@gmail.com · 12 years ago
  95. f2fca44 Updated Genomix by whongzhi@gmail.com · 12 years ago
  96. 61ca9a0 add outputformat option by jianfeng.jia@gmail.com · 12 years ago
  97. 4fcfc76 add test data by jianfeng.jia@gmail.com · 12 years ago
  98. 7261bd8 Add KmerSequenceWriter; Test framework is done. by jianfeng.jia@gmail.com · 12 years ago
  99. 7b788d2 svn merge -r2910:2939 by jianfeng.jia@gmail.com · 12 years ago
  100. 5402c45 change KmerHashPartitioncomputerFactory using BufferSerDeUtils by jianfeng.jia@gmail.com · 12 years ago