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asterix-gerrit.ics.uci.edu / hyracks / db9186e7a107fa1fb4ed8abd277952dc651fa7d3 / genomix / genomix-pregelix / data
  1. 53cc7e3 Merge branch 'wbiesing/debug' into genomix/fullstack_genomix by Jake Biesinger · 12 years ago
  2. 4273653 add ThreeNodesCycle, and it succeeds to pass test by Anbang Xu · 12 years ago
  3. de16f37 add AlreadyInEdge test case by Jake Biesinger · 12 years ago
  4. 03ba0f7 Add simple RF FR RF test case by Jake Biesinger · 12 years ago
  5. 14fb2b9 add random test et by Anbang Xu · 12 years ago
  6. df811e5 add SymmetryChecker by Anbang Xu · 12 years ago
  7. 6c79239 add AAA testcase by Anbang Xu · 12 years ago
  8. cc1135b change addEdge to unionEdge in update by Anbang Xu · 12 years ago
  9. 4b21369 Fix TandemRepeatAndCycle bug by Anbang Xu · 12 years ago
  10. 3e91447 add test case for tandem repeats with multiple self-edges by Jake Biesinger · 12 years ago
  11. 5ecb66f seperate MessageFlag and State by Anbang Xu · 12 years ago
  12. 6485489 Final Vertex Has correct edgelist by Anbang Xu · 12 years ago
  13. 4da15b2 add many similar bubbles in one pattern test case and BubbleMerge pass test by Anbang Xu · 12 years ago
  14. 1aed014 add statistics counters to removeTip, pathMerge, removeBridge by Anbang Xu · 12 years ago
  15. 8c187a6 add RandonWalk test case by Anbang Xu · 12 years ago
  16. 88e9442 RemoveTip pass test by Anbang Xu · 12 years ago
  17. e71a964 Unroll Repeat pass test by Anbang Xu · 12 years ago
  18. 39cfc58 add synthetic test case by Jake Biesinger · 12 years ago
  19. c2aa582 Merge branch 'anbangx/backupMergingWithMaster' into genomix/fullstack_genomix by Jake Biesinger · 12 years ago
  20. 1e03787 Merge branch 'anbangx/backupMergingWithMaster_errorcase' into wbiesing/merge_fs_backup by Jake Biesinger · 12 years ago
  21. b19ba95 BubbleMerge pass complicated test cases by Anbang Xu · 12 years ago
  22. fc4fe25 add failing pathmerge testcase by Jake Biesinger · 12 years ago
  23. 32a956b fix one bug in path merge by Anbang Xu · 12 years ago
  24. 630586c add test case for synthetic data by Jake Biesinger · 12 years ago
  25. 96eab83 Merge branch 'anbangx/backupMergingWithMaster' into wbiesing/driver_backup_merge by Jake Biesinger · 12 years ago
  26. 26e7332 BubbleMerge test is almost finished except grid test case by Anbang Xu · 12 years ago
  27. c0b37b1 change bubble's pre-condition -- pathNode to anyNode by Anbang Xu · 12 years ago
  28. e763a06 add complicated test case for BubbleMerge by Anbang Xu · 12 years ago
  29. 6ddc6cc testing BubbleMerge by Anbang Xu · 12 years ago
  30. 3aba0f0 SplitRepeat test is completed by Anbang Xu · 12 years ago
  31. 41ffd05 Merge with main branch by Anbang Xu · 12 years ago
  32. 4a9e45c Add testcases for SplitRepeat by Anbang Xu · 12 years ago
  33. 8270c5a Merge cycle to a single node in path merge. P4 test is completed by Anbang Xu · 12 years ago
  34. d688b5a Add skip tandem repeat to pathmerge. TODO: detect cycle in pathmerge by Anbang Xu · 12 years ago
  35. 87b679f Merge branch 'anbangx/fullstack_genomix' into wbiesing/driver by Jake Biesinger · 12 years ago
  36. 2f3e3bb PathMerge pass test except TandemRepeat. TODO: skip TandemRepeat in pathmerge by Anbang Xu · 12 years ago
  37. 03434ff add hyracks-built graph as a pregelix test case by Jake Biesinger · 12 years ago
  38. 569945a add RF/FR with/without head test for pathmerge by Anbang Xu · 12 years ago
  39. 9ac0dda Modify mergeWithKmer to mergeWithNode by Anbang Xu · 12 years ago
  40. d06c50f add testcase for pathmerge by Anbang Xu · 12 years ago
  41. ca15771 UnrollTandemRepeat is completed by Anbang Xu · 12 years ago
  42. b37b705 Add UnRollTandemRepeat. TODO: add the corresponding MSG and update edges by Anbang Xu · 12 years ago
  43. 5e01f76 Adapt RemoveLowCoverageVertex to new graph structure. Finally, all the patterns are adapted to new graph by Anbang Xu · 12 years ago
  44. e7856d5 Adapt ScaffoldingVertex to new graph structure by Anbang Xu · 12 years ago
  45. 6212780 BTS almost done and wait for EdgeListWritable[dir].getReadIds(Key key) by Anbang Xu · 12 years ago
  46. 0217e7e Adapt SplitRepeatVertex to new graph structure. TODO: test AdjSplitRepeat by Anbang Xu · 12 years ago
  47. 37a8489 Adapt MergeBubbleVertex to new graph structure. TODO: check if bubble flip and merge all metadata except kmer by Anbang Xu · 12 years ago
  48. 977a413 Adapt BridgeAddVertex and BridgeRemoveVertex to new graph structure by Anbang Xu · 12 years ago
  49. 4370b2b adapt TipAddVertex and TipRemoveVertex to new graph structure by Anbang Xu · 12 years ago
  50. 112cdf7 Adapt MapReduceVertex and P4 to new graph structure by Anbang Xu · 12 years ago
  51. e7885ee Pregel TestSuite is completed by Anbang Xu · 12 years ago
  52. 6f88379 save current state and prepare to clean up hadoop test result by Anbang Xu · 12 years ago
  53. 52bda5c add new graph result to PathMergeTestSet by Anbang Xu · 12 years ago
  54. be39f91 Add AverageCoverage to graph construction(hadoop) and make graphviz more pretty by Anbang Xu · 12 years ago
  55. ac6b1a6 RemoveBridge pass test and add RemoveLowCoverage and Scaffolding by Anbang Xu · 12 years ago
  56. 4a5ee49 Hadoop TestSuite is completed and P2 pass test by Anbang Xu · 12 years ago
  57. 18c032a make TestSuite for graph building(hadoop) by Anbang Xu · 12 years ago
  58. 6ad60bf fix bug in readFields of KmerListWritable by Anbang Xu · 12 years ago
  59. 6d8afff fix RemoveBridgeVertex and update for merge by Anbang Xu · 12 years ago
  60. aac7732 SimpleSplitRepeat is completed. An issue in graph building(hadoop): KmerList.appendList() doesn't check existed element by Anbang Xu · 12 years ago
  61. 0049eac refactor 'NaiveAlgorithm' to 'P1' and add test case for SplitRepeat by Anbang Xu · 12 years ago
  62. 29ebdc8 Map/Reduce version in pregel is completed by Anbang Xu · 12 years ago
  63. a5e97c7 p4 pass test by Anbang Xu · 12 years ago
  64. 4416d3c debugging p4 by Anbang Xu · 12 years ago
  65. c71a2d3 removeBridge pass tests by Anbang Xu · 12 years ago Alpha Alpha-Graph-v2.0
  66. b1ccba9 p4 pass test by Anbang Xu · 12 years ago
  67. b3c4a2b removeTip pass all the tests by Anbang Xu · 12 years ago
  68. f947fb8 add test suite case for removetip/removebridge/pathmerge by Anbang Xu · 12 years ago
  69. da3b802 Apply undirected graph algorithm in p2 by AnbangX · 12 years ago
  70. e6d7e7a code review with Jake by AnbangX · 12 years ago
  71. 46fc86e add test cases for removeBridge, removeTip and mergeBubble by AnbangX · 12 years ago
  72. cc77cf7 add test cases for path merge and other data clean patterns by AnbangX · 12 years ago
  73. f60ef35 add test for graph build by AnbangX · 12 years ago
  74. 631482f add first small test case by AnbangX · 12 years ago
  75. cfc37ee update new code and test in ipubmed by AnbangX · 12 years ago
  76. ef51a0a reset maxIteration by AnbangX · 12 years ago
  77. f11a472 add two step of log algorithm version by AnbangX · 12 years ago
  78. 9d5de1e add num-iteration by anbangx · 12 years ago
  79. b7c1b11 Finish verifying the correctness of Naive Algorithm and Log Algorithm by anbangx · 12 years ago
  80. f5ff29d change folder name to edu.uci.ics.genomix.pregelix by anbangx · 12 years ago
  81. 9ce8742 change code format of naive algorithm and delete some extra test code by anbangx · 12 years ago
  82. 8e25fd9 add client/drive and some test files by anbangx · 12 years ago
  83. e125a7e add small data file by anbangx · 12 years ago
  84. 562c2fc by anbangx · 12 years ago
  85. 322e6d6 update by anbangx · 12 years ago
  86. 2e1af00 add a folder to store test file by anbangx · 12 years ago
  87. a1bb02a add test file by anbangx · 12 years ago
  88. 648cedf Update LogAlgorithm for merging graph by anbangx · 12 years ago
  89. 7a14a81 Modify to SequenceFile by anbangx · 12 years ago
  90. f61ba4c Update genomix-pregelix by anbangx · 12 years ago