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hyracks
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d9933ebd8f768f34317c3ee153da9e350601ab36
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genomix
d9933eb
add getKmerNeighber
by Anbang Xu
· 12 years ago
3681903
Change sort to shuf
by Anbang Xu
· 12 years ago
ab586f4
small changes
by Anbang Xu
· 12 years ago
6faadad
add graph build automatical test script
by Anbang Xu
· 12 years ago
df811e5
add SymmetryChecker
by Anbang Xu
· 12 years ago
6c79239
add AAA testcase
by Anbang Xu
· 12 years ago
ac2e96e
fix graphviz in mac OS
by Anbang Xu
· 12 years ago
a3f2453
add OSvalidator for graphviz
by Nan Zhang
· 12 years ago
fa54cda
change in randomdata.sh, redirect error logs to another folder
by Anbang Xu
· 12 years ago
e7afab6
add more details in randomData.sh
by Anbang Xu
· 12 years ago
bedbf44
Merge branch 'anbangx/P1' into genomix/fullstack_genomix
by Anbang Xu
· 12 years ago
4c416ff
Delete isFakeVertex() check
by Anbang Xu
· 12 years ago
3475209
Extract method name and make it meaningful
by Anbang Xu
· 12 years ago
8fa9d09
P1 pass all the test. P1 should be correct one and can be used to do comparison
by Anbang Xu
· 12 years ago
9a70cf3
Add dirMapper to mapKey in P1
by Anbang Xu
· 12 years ago
11558a0
P1 pass test, except head_7(which has multiple updates)
by Anbang Xu
· 12 years ago
4bb7716
add testcase for P1
by Anbang Xu
· 12 years ago
99ea1c4
Clean up code
by Anbang Xu
· 12 years ago
6a47868
Fix P1
by Anbang Xu
· 12 years ago
5de7afd
remove incompatible words for results checking tool
by Nan Zhang
· 12 years ago
d17a2a2
remove NLineInputFormat for hadoop graph building
by Nan Zhang
· 12 years ago
aa74657
P1 pass testcase in which #pathnode is even
by Anbang Xu
· 12 years ago
f577a66
Exclude FakeVertex in ouput format
by Anbang Xu
· 12 years ago
1a7bc8b
Fix a bug in sendUpdateMsg(). setMergeDir should be in the front of sendUpdateMsg
by Anbang Xu
· 12 years ago
64bb87e
Add EdgeList.unionAdd(EdgeList)
by Anbang Xu
· 12 years ago
eebeaf8
add isFlip to MessageFlag
by Anbang Xu
· 12 years ago
6744c68
Add updateMsg to P1, P1 need to deal with the case in which #pathnode is even
by Anbang Xu
· 12 years ago
b8c534c
Clean up some old P1 code
by Anbang Xu
· 12 years ago
cca4428
Override the reduce function typically for P1
by Anbang Xu
· 12 years ago
6c063e3
Adapt new broadcastMergeMsg
by Anbang Xu
· 12 years ago
0b163b0
add boolean flag to broadcastKillself. may deley killSelf
by Anbang Xu
· 12 years ago
d7fb5ef
fixing P1
by Anbang Xu
· 12 years ago
e1d8840
Merge branch 'genomix/fullstack_genomix' of https://code.google.com/p/hyracks into genomix/fullstack_genomix
by Anbang Xu
· 12 years ago
cc1135b
change addEdge to unionEdge in update
by Anbang Xu
· 12 years ago
bd8ee91
correct randomdata.sh
by Anbang Xu
· 12 years ago
ef688ee
update randomdata script to log to a file and only keep error files
by Jake Biesinger
· 12 years ago
b204a4a
remove the io.sort factor in hadoop
by Nan Zhang
· 12 years ago
139234c
fix the bug of hyracks_inputformat opts
by Nan Zhang
· 12 years ago
34eccad
modify random data script to be more helpful in errors
by Anbang Xu
· 12 years ago
1c51f32
add script for creating random data
by Anbang Xu
· 12 years ago
d309f00
add tandem repeat cases for hyracks graphbuilding
by Jake Biesinger
· 12 years ago
1280087
fixed hyracks graphbuild tests
by Jake Biesinger
· 12 years ago
4b21369
Fix TandemRepeatAndCycle bug
by Anbang Xu
· 12 years ago
3e91447
add test case for tandem repeats with multiple self-edges
by Jake Biesinger
· 12 years ago
5236ed2
remove default values for output format of hyracks graph build
by Nan Zhang
· 12 years ago
c33e4b7
add option for hyracks driver to have text output
by Nan Zhang
· 12 years ago
5ecb66f
seperate MessageFlag and State
by Anbang Xu
· 12 years ago
fb6b585
forgot to import BspUtils :)
by Jake Biesinger
· 12 years ago
016d7ff
Merge branch 'genomix/fullstack_genomix' of https://code.google.com/p/hyracks into genomix/fullstack_genomix
by Anbang Xu
· 12 years ago
7e8075b
correct the input format for P2
by Anbang Xu
· 12 years ago
8c9ed0f
update driver to use P2's custom input and outputformat classes
by Jake Biesinger
· 12 years ago
d877381
Merge branch 'anbangx/fullstack_genomix' into genomix/fullstack_genomix
by Anbang Xu
· 12 years ago
016c6f4
add P2GraphInputFormat
by Anbang Xu
· 12 years ago
3f9dc1d
Merge branch 'nanzhang/hyracks_genomix' into genomix/fullstack_genomix
by Nan Zhang
· 12 years ago
addf565
FramSize Test normal run
by Nan Zhang
· 12 years ago
67ae8ad
ADD more testcases for pathmerge
by Anbang Xu
· 12 years ago
63e5756
add lock to fakenode exist check
by Anbang Xu
· 12 years ago
db7f854
clean up useless code
by Anbang Xu
· 12 years ago
e830955
Merge branch 'anbangx/fullstack_genomix' into genomix/fullstack_genomix
by Anbang Xu
· 12 years ago
385dca4
Add sychnized lock to P2 to avoid duplicate fake nodes
by Anbang Xu
· 12 years ago
24f2ead
add boolean flag to switch method between P2 and P4
by Anbang Xu
· 12 years ago
9a0ab2f
add overall step timings
by Jake Biesinger
· 12 years ago
b775a8c
fix -runLocal! preglix and hyracks use different CC's, NC's and ports
by Jake Biesinger
· 12 years ago
2acd0b6
Fix one bug in P2/P4
by Anbang Xu
· 12 years ago
943109c
Merge branch 'nanzhang/hyracks_genomix' of https://code.google.com/p/hyracks into nanzhang/hyracks_genomix
by Nan Zhang
· 12 years ago
d7ded9c
small change on hyracks_genomix
by Nan Zhang
· 12 years ago
98edaf9
add sinlgelongread test set
by Nan Zhang
· 12 years ago
b4a494e
frameSize pressure test coding complete
by Nan Zhang
· 12 years ago
b38f2fb
add getclassloader() log for hyracks' driver
by Nan Zhang
· 12 years ago
b01f8e8
change the stat package name in graph building of hyracks
by Nan Zhang
· 12 years ago
2e63796
add graphviz mac version for graph building of hyracks
by Nan Zhang
· 12 years ago
495440b
add frame size pressure test package in driver
by Nan Zhang
· 12 years ago
ae62ffe
P2 pass all the tests except cycle
by Anbang Xu
· 12 years ago
027051e
Add flag to notice apex to updateEdge
by Anbang Xu
· 12 years ago
e3d4c1a
Succeed to apply apexMap
by Anbang Xu
· 12 years ago
20a03b1
add kmerAndDirWritable
by Anbang Xu
· 12 years ago
4c5d5ba
add logging.properties and fix compatibility issue with old bash versions
by Nan Zhang
· 12 years ago
6485489
Final Vertex Has correct edgelist
by Anbang Xu
· 12 years ago
55a9adc
add test case for P2
by Anbang Xu
· 12 years ago
9f9151c
Merge remote-tracking branch 'origin/genomix/fullstack_genomix' into nanzhang/hyracks_genomix
by Nan Zhang
· 12 years ago
1c3f990
add sinlgelongread test set
by Nan Zhang
· 12 years ago
77bc37d
frameSize pressure test coding complete
by Nan Zhang
· 12 years ago
f8f20fa
add getclassloader() log for hyracks' driver
by Nan Zhang
· 12 years ago
11cfa9f
change the stat package name in graph building of hyracks
by Nan Zhang
· 12 years ago
772cebd
add graphviz mac version for graph building of hyracks
by Nan Zhang
· 12 years ago
fad0703
going to use different rules to identify head
by Anbang Xu
· 12 years ago
9de0ad3
P2 pass single tests
by Anbang Xu
· 12 years ago
14d58f0
remove sendOutUpdate for head(P2 debug)
by Anbang Xu
· 12 years ago
a7405c1
add should merge dir to state
by Anbang Xu
· 12 years ago
522b5ff
Change update condition
by Anbang Xu
· 12 years ago
39b490b
change updateEdges for processUpdate in pathmerge
by Anbang Xu
· 12 years ago
d429aee
revert to previous initVertex behavior
by Jake Biesinger
· 12 years ago
3274eac
try to have 2 local stes of CCs and NCs (-runLocal not working)
by Jake Biesinger
· 12 years ago
99d5629
Fix a bug in configure isFlip
by Anbang Xu
· 12 years ago
d688f36
don't use a max number of readids on edges
by Jake Biesinger
· 12 years ago
9e32331
Add full-pipeline counters
by Jake Biesinger
· 12 years ago
da9eeaf
hadoop uses |IO_DIRS| * #slaves reducers
by Jake Biesinger
· 12 years ago
a9f475d
use $IO_DIRS, not -coresPerMachine for hyracks partitions + hadoop #reducers
by Jake Biesinger
· 12 years ago
6dfc4bb
Hadoop graphbuild works!
by Jake Biesinger
· 12 years ago
b0aed82
hadoop dist cache must be an absolute path
by Jake Biesinger
· 12 years ago
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