1. d76848c use a single version of GenerateGraphViz by Jake Biesinger · 12 years ago
  2. 97a771f remove unused kmer functions by Jake Biesinger · 12 years ago
  3. 11ed1cb clarify flipNeighbor instead of flip in EDGETYPE by Jake Biesinger · 12 years ago
  4. e142ce3 Merge remote-tracking branch 'origin/master' into genomix/fullstack_genomix by Jake Biesinger · 12 years ago
  5. ff74a51 Merge remote-tracking branch 'origin/yingyi/fullstack_fix' into genomix/fullstack_genomix by Jake Biesinger · 12 years ago
  6. 81d5d8a set FRAME_SIZE and FRAME_LIMIT for hyracks graphbuild test by Jake Biesinger · 12 years ago
  7. 35c7f67 remove Comparable from non-key datatypes by Jake Biesinger · 12 years ago
  8. a9a19ee improve the performance of the reachability vertex and the shortest paths vertex by buyingyi · 12 years ago
  9. 4f42598 use SimpleBubbleMerge in driver by Jake Biesinger · 12 years ago
  10. 25488f2 Merge branch 'anbangx/fullstack_genomix' into genomix/fullstack_genomix by Anbang Xu · 12 years ago
  11. 593f13f seperate Simple and Complex version of bubblemerge by Anbang Xu · 12 years ago
  12. cca791e Fix error in package by Anbang Xu · 12 years ago
  13. 7d68ba4 Merge branch 'genomix/fullstack_genomix' of https://code.google.com/p/hyracks into genomix/fullstack_genomix by Jake Biesinger · 12 years ago
  14. 4369e4a remove unused readIDIterator by Jake Biesinger · 12 years ago
  15. 35ac37c remove fromByte function in DIR by Jake Biesinger · 12 years ago
  16. 68bf4b8 rename setByRead to setFromStringBytes (and for reverse) by Jake Biesinger · 12 years ago
  17. 050323b FRAME_SIZE and FRAME_LIMITS are (only) set in the conf by Jake Biesinger · 12 years ago
  18. a503607 refactor jar distribution function to use getAbsolutePathFromURI by Jake Biesinger · 12 years ago
  19. 34e4b0c respect -graphClean_maxIterations in P* by Jake Biesinger · 12 years ago
  20. 83af358 static is redundant on enums by Jake Biesinger · 12 years ago
  21. c8dc2d1 remove -port and -ipAddress in favor of reading from conf by Jake Biesinger · 12 years ago
  22. d20e770 remove extraArguments from jobConf parser by Jake Biesinger · 12 years ago
  23. 773abad remove apache commons logger in minicluster.DriverUtils by Jake Biesinger · 12 years ago
  24. 9034bec remove TEXT output for HyracksDriver by Jake Biesinger · 12 years ago
  25. 2279e99 remove kmerSize from GenomixReducer by Jake Biesinger · 12 years ago
  26. ac60f5b plot histograms of all statistics (in bubble gum red...) by Jake Biesinger · 12 years ago
  27. d9cd82f Fix the hard coding in get majoyVertex and minorVertex by Anbang Xu · 12 years ago
  28. 4a1435f Rename previous/next to forward/reverse by Anbang Xu · 12 years ago
  29. 07b12a0 Code review on BubbleMerge -- 2013.9.26 by Anbang Xu · 12 years ago
  30. 7aae4f2 Keep simply version of BubbleMerge, clean some code and prepare to do code review by Anbang Xu · 12 years ago
  31. 2d23ae1 Throw an exception in remove tip. Fix based on today's code review by Anbang Xu · 12 years ago
  32. 8ab65f2 add brace to any control logic (remove tip) by Anbang Xu · 12 years ago
  33. db95e7b Remove some unnecesarry member variable by Anbang Xu · 12 years ago
  34. 3b376eb Delete some functions in BasicGraphClean and BasicPathMerge by Anbang Xu · 12 years ago
  35. fad808b Delete some unuse code by Anbang Xu · 12 years ago
  36. fac1179 IncomingMsg shouldn't be a member variable by Anbang Xu · 12 years ago
  37. c3782a9 refactor updateCounter to incrementCounter by Anbang Xu · 12 years ago
  38. 3747ef3 Move initVertex() to step1 by Anbang Xu · 12 years ago
  39. 6b5467c Never hard coding... Move into one loop by Anbang Xu · 12 years ago
  40. daaaade Merge with code review by Anbang Xu · 12 years ago
  41. b41f87f Code review on removeTip -- 2013.9.25 by Anbang Xu · 12 years ago
  42. 01927ed Add log to removetip by Anbang Xu · 12 years ago
  43. 97dd3be sort stats output by Jake Biesinger · 12 years ago
  44. 6bb2077 add STATS step, saving counters to txt file by Jake Biesinger · 12 years ago
  45. 8b4bef3 fix driver's args by Jake Biesinger · 12 years ago
  46. 79e61c0 pass conf directly to hadoop graphbuild by Jake Biesinger · 12 years ago
  47. 89a4708 standardize kmer name in hadoop graphbuild by Jake Biesinger · 12 years ago
  48. 11f92af change names of hyracks graphbuild enums by Jake Biesinger · 12 years ago
  49. 31f93d6 refactor driver init by Jake Biesinger · 12 years ago
  50. 787d6a2 refactor/reorder driver code by Jake Biesinger · 12 years ago
  51. 952da34 allow non-pregelix jobs to be interleaved with pregelix jobs by Jake Biesinger · 12 years ago
  52. 1a0ca94 restrict -pipelineOrder: BUILD* must occur at most once and come first by Jake Biesinger · 12 years ago
  53. d8c12bd .gitignore: stop tracking pycharm project files by Jake Biesinger · 12 years ago
  54. 28162e5 add hadoop job for graph statistics (uses counters) by Jake Biesinger · 12 years ago
  55. 0d1f7ba Apply logReadIds to EdgeWritable by Anbang Xu · 12 years ago
  56. f65b2e5 Add logReadIds option to driver by Anbang Xu · 12 years ago
  57. bf8d060 ADD #iteration to log by Anbang Xu · 12 years ago
  58. 6b5caff Extract common method for P1 and P4 by Anbang Xu · 12 years ago
  59. aafca2f Add logging to P1 by Anbang Xu · 12 years ago
  60. 9614206 Merge branch 'genomix/fullstack_genomix' of https://code.google.com/p/hyracks into genomix/fullstack_genomix by Anbang Xu · 12 years ago
  61. ed271fd ADD some comments by Anbang Xu · 12 years ago
  62. be75f8e fix another NPE for -debugKmers by Jake Biesinger · 12 years ago
  63. 08d4d04 reformat code and remove some debug checks (msgs only from neighbors anyway) by Jake Biesinger · 12 years ago
  64. 8ba5da2 fix NPE for debugKmers by Jake Biesinger · 12 years ago
  65. 09036bb add cmdline option to specify kmers to log by Jake Biesinger · 12 years ago
  66. d0ae604 fix hyracks graphbuilding to match new interface (pass in normalizer) by Jake Biesinger · 12 years ago
  67. a3ec17d Merge branch 'genomix/fullstack_genomix' into wbiesing/refactor_p4 by Jake Biesinger · 12 years ago
  68. bc43d87 Merge branch 'yingyi/fullstack_fix' into wbiesing/refactor_p4 by Jake Biesinger · 12 years ago
  69. 81e67dc Remove jar deploy messages from hyracks driver by Jake Biesinger · 12 years ago
  70. 3e02877 refactor names in getKmerNeighbors.py by Jake Biesinger · 12 years ago
  71. 807b452 Add more restriction for chooseMergedir by Anbang Xu · 12 years ago
  72. b7bf37c Change driver to run P1 by Anbang Xu · 12 years ago
  73. 59ee6a1 Prepare to run P1 by Anbang Xu · 12 years ago
  74. fd9229e Clean up code and move to cluster to test P0 by Anbang Xu · 12 years ago
  75. 82a9005 P0(refactor version of P1) pass all small testcases by Anbang Xu · 12 years ago
  76. e5ddfc4 Sender msg edgetype need to fix by Anbang Xu · 12 years ago
  77. 671cf67 Simply P1 and add throw Exception to it by Anbang Xu · 12 years ago
  78. 8009477 Refactor P1 by Anbang Xu · 12 years ago
  79. 579729d Pass the opTrackerFactory instead of null. by salsubaiee · 12 years ago
  80. 0a04676 use a list of kmers for verbose mode by Jake Biesinger · 12 years ago
  81. d26e5f6 Fixed class cast exception in test cases. by salsubaiee · 12 years ago
  82. 4ab69b6 Merge master into salsubaiee/master_issue_92. by salsubaiee · 12 years ago
  83. b633dc3 Merge with main branch after some refactor by Anbang Xu · 12 years ago
  84. 65a8336 Keep old version of ComplexBubbleMerge by Anbang Xu · 12 years ago
  85. b6a3caff Refactoring BubbleMerge by Anbang Xu · 12 years ago
  86. 89cafca Allowed user to specify the merging policy by salsubaiee · 12 years ago
  87. d47cd28 add 10 test cases for edgelistWritable by Nan Zhang · 12 years ago
  88. 52cb426 small tweaks for Edge Test by Nan Zhang · 12 years ago
  89. a128e4b Simplify the main compute function of removetip and removelowcoverage by Anbang Xu · 12 years ago
  90. 1c73130 Refactor removeLowCoverage by Anbang Xu · 12 years ago
  91. 4f0f3b5 fix raw binary comparator by buyingyi · 12 years ago
  92. 9908512 Refactor tipremove by Anbang Xu · 12 years ago
  93. cda3a02 fix raw normalized key computer by buyingyi · 12 years ago
  94. cefced5 use raw binary comparator internally for pregelix by buyingyi · 12 years ago
  95. 14f3c71 Add DIR.edgeType() to covert dir to edgeTypew by Anbang Xu · 12 years ago
  96. f91c5bb Refactor broadcaseMerge to sendMergeMsg by Anbang Xu · 12 years ago
  97. cb7ebcd Finish integration by Anbang Xu · 12 years ago
  98. 0958af1 Pass tests by Anbang Xu · 12 years ago
  99. 88e742e Fix other pattherns by Anbang Xu · 12 years ago
  100. 205471f Apply EDGETYPE to P4 by Anbang Xu · 12 years ago