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asterix-gerrit.ics.uci.edu / hyracks / d688f3634f28419f8998e37b4202488ddd9e0eeb / genomix / genomix-pregelix / src / test
  1. 5cda522 format test case by Anbang Xu · 12 years ago
  2. 81833a0 add scaffoldingAggregator by Anbang Xu · 12 years ago
  3. 4da15b2 add many similar bubbles in one pattern test case and BubbleMerge pass test by Anbang Xu · 12 years ago
  4. a9c60b3 The aggregator for all the patterns are completed by Anbang Xu · 12 years ago
  5. 1aed014 add statistics counters to removeTip, pathMerge, removeBridge by Anbang Xu · 12 years ago
  6. 7f2208f PathMerge aggregator is completed by Anbang Xu · 12 years ago
  7. 52a279f Aggregator passes test by Anbang Xu · 12 years ago
  8. b1c7809 testing by Anbang Xu · 12 years ago
  9. f3a548c move aggregator output to test by Anbang Xu · 12 years ago
  10. ca28b1b add StatisticsCounterAggregator by Anbang Xu · 12 years ago
  11. 8c187a6 add RandonWalk test case by Anbang Xu · 12 years ago
  12. e71a964 Unroll Repeat pass test by Anbang Xu · 12 years ago
  13. 17b99f2 add stop haltNode in pathmerge and fix the bug Jake mentioned by Anbang Xu · 12 years ago
  14. 39cfc58 add synthetic test case by Jake Biesinger · 12 years ago
  15. 9dec13e remove generated genomix-pregel test case xml files by Jake Biesinger · 12 years ago
  16. c2aa582 Merge branch 'anbangx/backupMergingWithMaster' into genomix/fullstack_genomix by Jake Biesinger · 12 years ago
  17. 1e03787 Merge branch 'anbangx/backupMergingWithMaster_errorcase' into wbiesing/merge_fs_backup by Jake Biesinger · 12 years ago
  18. b19ba95 BubbleMerge pass complicated test cases by Anbang Xu · 12 years ago
  19. fc4fe25 add failing pathmerge testcase by Jake Biesinger · 12 years ago
  20. 32a956b fix one bug in path merge by Anbang Xu · 12 years ago
  21. 630586c add test case for synthetic data by Jake Biesinger · 12 years ago
  22. 5747845 Pregelix JobGenerator uses proper GenomixJobConf by Jake Biesinger · 12 years ago
  23. 96eab83 Merge branch 'anbangx/backupMergingWithMaster' into wbiesing/driver_backup_merge by Jake Biesinger · 12 years ago
  24. 26e7332 BubbleMerge test is almost finished except grid test case by Anbang Xu · 12 years ago
  25. ab0b235 test Rectangle by Anbang Xu · 12 years ago
  26. 85dfedf Add broadcaseKillselfAndNoticeToUpdateEdges and responseToDeadVertexAndUpdateEdges by Anbang Xu · 12 years ago
  27. c0b37b1 change bubble's pre-condition -- pathNode to anyNode by Anbang Xu · 12 years ago
  28. e763a06 add complicated test case for BubbleMerge by Anbang Xu · 12 years ago
  29. 6ddc6cc testing BubbleMerge by Anbang Xu · 12 years ago
  30. 3aba0f0 SplitRepeat test is completed by Anbang Xu · 12 years ago
  31. 41ffd05 Merge with main branch by Anbang Xu · 12 years ago
  32. 4a9e45c Add testcases for SplitRepeat by Anbang Xu · 12 years ago
  33. 8270c5a Merge cycle to a single node in path merge. P4 test is completed by Anbang Xu · 12 years ago
  34. d688b5a Add skip tandem repeat to pathmerge. TODO: detect cycle in pathmerge by Anbang Xu · 12 years ago
  35. adac3ef modify path for static test in driver by Jake Biesinger · 12 years ago
  36. 87b679f Merge branch 'anbangx/fullstack_genomix' into wbiesing/driver by Jake Biesinger · 12 years ago
  37. 2f3e3bb PathMerge pass test except TandemRepeat. TODO: skip TandemRepeat in pathmerge by Anbang Xu · 12 years ago
  38. 03434ff add hyracks-built graph as a pregelix test case by Jake Biesinger · 12 years ago
  39. 569945a add RF/FR with/without head test for pathmerge by Anbang Xu · 12 years ago
  40. 7a75b07 add updateEdges for pathmerge. Issue: mergeWithStartreads by Anbang Xu · 12 years ago
  41. 9ac0dda Modify mergeWithKmer to mergeWithNode by Anbang Xu · 12 years ago
  42. 6fc84f1 Add additional merge info to pathmerge by Anbang Xu · 12 years ago
  43. d06c50f add testcase for pathmerge by Anbang Xu · 12 years ago
  44. bb9901e re-remove nodes cleared out of Anbang's branch by Jake Biesinger · 12 years ago
  45. 639c806 separate config from driver and pipeline setup by Jake Biesinger · 12 years ago
  46. 4f05864 Refactor configuration for all jobs into global GenomixJobConf by Jake Biesinger · 12 years ago
  47. ced394a Make pathmerge robost by Anbang Xu · 12 years ago
  48. b37b705 Add UnRollTandemRepeat. TODO: add the corresponding MSG and update edges by Anbang Xu · 12 years ago
  49. 6efa434 Completed P2 debugging by Anbang Xu · 12 years ago
  50. a3c0538 Clean up P2 code and prepare to deep debug it by Anbang Xu · 12 years ago
  51. feec5be Fix BubbleMerge by Anbang Xu · 12 years ago
  52. 5e01f76 Adapt RemoveLowCoverageVertex to new graph structure. Finally, all the patterns are adapted to new graph by Anbang Xu · 12 years ago
  53. e7856d5 Adapt ScaffoldingVertex to new graph structure by Anbang Xu · 12 years ago
  54. 6212780 BTS almost done and wait for EdgeListWritable[dir].getReadIds(Key key) by Anbang Xu · 12 years ago
  55. 0217e7e Adapt SplitRepeatVertex to new graph structure. TODO: test AdjSplitRepeat by Anbang Xu · 12 years ago
  56. 37a8489 Adapt MergeBubbleVertex to new graph structure. TODO: check if bubble flip and merge all metadata except kmer by Anbang Xu · 12 years ago
  57. 977a413 Adapt BridgeAddVertex and BridgeRemoveVertex to new graph structure by Anbang Xu · 12 years ago
  58. 4370b2b adapt TipAddVertex and TipRemoveVertex to new graph structure by Anbang Xu · 12 years ago
  59. 112cdf7 Adapt MapReduceVertex and P4 to new graph structure by Anbang Xu · 12 years ago
  60. e7885ee Pregel TestSuite is completed by Anbang Xu · 12 years ago
  61. 0e037c1 Prepare to clean up pregel testSuite by Anbang Xu · 12 years ago
  62. 6f88379 save current state and prepare to clean up hadoop test result by Anbang Xu · 12 years ago
  63. 0d72095 Make generic message class for all patterns by Anbang Xu · 12 years ago
  64. b1c9c7d P1ForPathMergeVertex is completed, but one issue about even length and message from both size can't be solve by Anbang Xu · 12 years ago
  65. bb8e581 Complete NaiveBFSTraverse and make more test cases by Anbang Xu · 12 years ago
  66. 361916b save current state by Anbang Xu · 12 years ago
  67. 52bda5c add new graph result to PathMergeTestSet by Anbang Xu · 12 years ago
  68. 580f6cd add vertex.activate() to notice update and change DirectionFlag to 2 bits by Anbang Xu · 12 years ago
  69. 05fc10d clean pregel package for latest master by Anbang Xu · 12 years ago
  70. ac6b1a6 RemoveBridge pass test and add RemoveLowCoverage and Scaffolding by Anbang Xu · 12 years ago
  71. 4a5ee49 Hadoop TestSuite is completed and P2 pass test by Anbang Xu · 12 years ago
  72. 18c032a make TestSuite for graph building(hadoop) by Anbang Xu · 12 years ago
  73. 61bfb93 add computeSimilarity and mergeAverageCoverage to MergeBubbleVertex by Anbang Xu · 12 years ago
  74. cb4391e clean pregel package for build by Anbang Xu · 12 years ago
  75. c4961c9 complete MergeBubbleVertex & wait for compute fracSimilarity by Anbang Xu · 12 years ago
  76. 3986b17 debugging BubbleMergeVertex by Anbang Xu · 12 years ago
  77. 6ad60bf fix bug in readFields of KmerListWritable by Anbang Xu · 12 years ago
  78. ad800e8 more cleanup of setByRead interface by Jake Biesinger · 12 years ago genomix/before-nodeid-graph-cleanup-Aug2013
  79. ac6a090 Fix BubbleAddVertex and pass test by Anbang Xu · 12 years ago
  80. 6d8afff fix RemoveBridgeVertex and update for merge by Anbang Xu · 12 years ago
  81. ec095b2 RemoveTipVertex pass test by Anbang Xu · 12 years ago
  82. 95c432c BridgeAddVertex pass test by Anbang Xu · 12 years ago
  83. d1075a0 adapt TipAddVertex to new graph construction by Anbang Xu · 12 years ago
  84. aac7732 SimpleSplitRepeat is completed. An issue in graph building(hadoop): KmerList.appendList() doesn't check existed element by Anbang Xu · 12 years ago
  85. 6ee7bdf fix HashSet in SplitRepeat by Anbang Xu · 12 years ago
  86. 0049eac refactor 'NaiveAlgorithm' to 'P1' and add test case for SplitRepeat by Anbang Xu · 12 years ago
  87. 5412086 refactor LogAlgorithm to P2 by Anbang Xu · 12 years ago
  88. 9db1ea8 merge MapReduceVertex to p2 and p2 is completed by Anbang Xu · 12 years ago
  89. 29ebdc8 Map/Reduce version in pregel is completed by Anbang Xu · 12 years ago
  90. 5dfa7b6 add MapReduceVertex for mapper/reducer in pregel by Anbang Xu · 12 years ago
  91. b8e0097 p2 pass test9 by Anbang Xu · 12 years ago
  92. 9e00650 p2 pass all the tests except 9 by Anbang Xu · 12 years ago
  93. 2990977 debugging p2 by Anbang Xu · 12 years ago
  94. 1307443 P2 pass test1,2,3,4 by Anbang Xu · 12 years ago
  95. d253d8f fix mergeWithRFKmer by Anbang Xu · 12 years ago
  96. a5e97c7 p4 pass test by Anbang Xu · 12 years ago
  97. 4416d3c debugging p4 by Anbang Xu · 12 years ago
  98. 970c74f move old key/value class to oldtype folder by Anbang Xu · 12 years ago
  99. c71a2d3 removeBridge pass tests by Anbang Xu · 12 years ago Alpha Alpha-Graph-v2.0
  100. b1ccba9 p4 pass test by Anbang Xu · 12 years ago