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asterix-gerrit.ics.uci.edu / hyracks / d429aee16e539754e28019c4b6d47809434d82a4 / genomix / genomix-driver
  1. 3274eac try to have 2 local stes of CCs and NCs (-runLocal not working) by Jake Biesinger · 12 years ago
  2. 9e32331 Add full-pipeline counters by Jake Biesinger · 12 years ago
  3. da9eeaf hadoop uses |IO_DIRS| * #slaves reducers by Jake Biesinger · 12 years ago
  4. a9f475d use $IO_DIRS, not -coresPerMachine for hyracks partitions + hadoop #reducers by Jake Biesinger · 12 years ago
  5. 7294ef7 hadoop jar deployment fix by Jake Biesinger · 12 years ago
  6. d21026a shut down previous clusters again by Jake Biesinger · 12 years ago
  7. 2a30771 don't delete the default log directory on cluster shutdown by Jake Biesinger · 12 years ago
  8. 6f98c6f read additional ports from .properties; launch multiple CC's on one machine(?) by Jake Biesinger · 12 years ago
  9. a56a98a read FRAME_SIZE and FRAME_LIMIT from cluster.properties by Jake Biesinger · 12 years ago
  10. 7f546b5 Use maven-built app.home when run from Eclipse (mus trun mvn package once) by Jake Biesinger · 12 years ago
  11. 3255cb1 move scripts back (can't run non-local eclipse without mvn package) by Jake Biesinger · 12 years ago
  12. 3fb78eb move and chmod +x scripts in driver so eclipse can call the directly by Jake Biesinger · 12 years ago
  13. 2d358c6 runLocal is working but doesn't shut down properly by Jake Biesinger · 12 years ago
  14. db95a42 only shut down pregelix cluster if it's running by Jake Biesinger · 12 years ago
  15. 0734cd2 STATS is a separate option and DUMP_FASTA can happen after any step by Jake Biesinger · 12 years ago
  16. 16a94ca WIP: partial support for local/nonlocal for hadoop, hyracks and pregelix by Jake Biesinger · 12 years ago
  17. eb807a3 add scratch dir creator script in driver by Jake Biesinger · 12 years ago
  18. ee82213 increase default job history for adminconsole by Jake Biesinger · 12 years ago
  19. ed5a065 less aggressive and adjustable cluster wait times by Jake Biesinger · 12 years ago
  20. f389e7e tweak framesize by Jake Biesinger · 12 years ago
  21. eecb337 increase wait time and add a shutdown hook that stops the clusters by Jake Biesinger · 12 years ago
  22. 2d72d3e add -followsGraphBuild for those inputs proceeding build by Jake Biesinger · 12 years ago
  23. 8f6b461 refactor pregelix job creation by Anbang Xu · 12 years ago
  24. 33d8284 fix driverUtils string value by Anbang Xu · 12 years ago
  25. a32d7ce adjust job history size by Nan Zhang · 12 years ago
  26. 6c4e526 read and set framesize from cluster.properties by Jake Biesinger · 12 years ago
  27. 15b6f47 add MAX_READ_IDS_PER_EDGE in opts parser and jobs by Jake Biesinger · 12 years ago
  28. d169c54 auto-discover CC port and IP settings (broke runLocal) by Jake Biesinger · 12 years ago
  29. 843db89 Don't use infiniband ports (look into in the future) by Jake Biesinger · 12 years ago
  30. 21bb3d6 don't reuse Hyracks CC in Pregelix jobs by Jake Biesinger · 12 years ago
  31. 4aa155f increase wait time and defer creating the driver until NCs are active by Jake Biesinger · 12 years ago
  32. 284e5f1 use .pid files to track the CC and NC nodes by Jake Biesinger · 12 years ago
  33. 3bb11f5 move start/stop cluster in utils by Jake Biesinger · 12 years ago
  34. f18eed5 Add some logging and attempt to shut down servers on exception by Jake Biesinger · 12 years ago
  35. 5936fcb fix NPE by Jake Biesinger · 12 years ago
  36. ddeb021 Split driver utilities into their own file by Jake Biesinger · 12 years ago
  37. e643029 genomix driver is responsible for start/stop of Hyracks/Pregelix clusters by Jake Biesinger · 12 years ago
  38. dc32cf2 separate NC's for pregelix and hyracks by Jake Biesinger · 12 years ago
  39. 11823d7 simpler commands for script GENOMIX_HOME resolution by Jake Biesinger · 12 years ago
  40. d4b581c Run cluster and driver scripts from anywhere by Jake Biesinger · 12 years ago
  41. 558ea60 Merge aggregator with main branch by Anbang Xu · 12 years ago
  42. 50b28b6 Adpat hadoop testsuite to have linespermap arg by Anbang Xu · 12 years ago
  43. 4e63417 fix location of stores.properties by Jake Biesinger · 12 years ago
  44. 476760d Add timed logging to genomix-driver jobs by Jake Biesinger · 12 years ago
  45. 0d0f899 use command-line args in genomix-driver by Jake Biesinger · 12 years ago
  46. 676a268 stats are binned by whole value by Jake Biesinger · 12 years ago
  47. 65ee367 add STATS and DUMP_FASTA steps to the graph (run locally) by Jake Biesinger · 12 years ago
  48. 5be5c46 fix coresPerMachine's default values by Jake Biesinger · 12 years ago
  49. 28cbeae save intermediate results by default (found a bug in pregelix-core?) by Jake Biesinger · 12 years ago
  50. 8b79c57 don't save intermediate results by default; add option to do so by Jake Biesinger · 12 years ago
  51. f9e6e5f add hadoop building to the driver by Jake Biesinger · 12 years ago
  52. 630586c add test case for synthetic data by Jake Biesinger · 12 years ago
  53. d75565c add option for corespermachine in jobconf by Nan Zhang · 12 years ago
  54. 21c3906 genomix-driver copies results to text by Jake Biesinger · 12 years ago
  55. 0d6afba remove minidfs cluster (so writing directly to lcoal disk now) by Jake Biesinger · 12 years ago
  56. 34c19fd refactoring local mode by Jake Biesinger · 12 years ago
  57. 2075152 add .tar.gz as an assembly target by Jake Biesinger · 12 years ago
  58. a332dbe copy conf directory into binary assembly output by Jake Biesinger · 12 years ago
  59. 4e22bc4 genomix driver takes a directory as local input by Jake Biesinger · 12 years ago
  60. 51a0502 separate genomix driver in/out to local/hdfs by Jake Biesinger · 12 years ago
  61. 34feeb2 add hyracks .properties and scripts to genomix-driver by Jake Biesinger · 12 years ago
  62. 1e8c661 driver pom generates cc and nc scripts by Jake Biesinger · 12 years ago
  63. 25a66b3 stop removing `expected` dir during clean (used for testing) by Jake Biesinger · 12 years ago
  64. fad8c77 update genomix-driver pom to use auto-generated script by Jake Biesinger · 12 years ago
  65. 6aae1de don't use root HDFS path by Jake Biesinger · 12 years ago
  66. 971c984 genomix driver actually uses cmdline args by Jake Biesinger · 12 years ago
  67. b2d89d1 remove junit and pmcommon dependencies by Jake Biesinger · 12 years ago
  68. 3038537 appassembler for genomix driver by Jake Biesinger · 12 years ago
  69. adac3ef modify path for static test in driver by Jake Biesinger · 12 years ago
  70. 6c997b7 Fix kmer used in minicluster by Jake Biesinger · 12 years ago
  71. c9fe0a9 driver adapts to build output (InitialGraphInputFormat) by Jake Biesinger · 12 years ago
  72. 1e86fe0 choose the unmerge_graphbuilding for genomix-driver by Nan Zhang · 12 years ago
  73. fea8393 add unrollTandem to driver by Jake Biesinger · 12 years ago
  74. bb9901e re-remove nodes cleared out of Anbang's branch by Jake Biesinger · 12 years ago
  75. 5894562 GenomixDriver uses simpler pipeline builder by Jake Biesinger · 12 years ago
  76. d4fa74b Driver can run pregelix or Hyracks jobs locally by Jake Biesinger · 12 years ago
  77. b1d8071 GenomixDriver: hryacks runs but can't find input by Jake Biesinger · 12 years ago
  78. 6eade1d use local test cluster by Jake Biesinger · 12 years ago
  79. 639c806 separate config from driver and pipeline setup by Jake Biesinger · 12 years ago
  80. 11c499b Add license header by Jake Biesinger · 12 years ago
  81. 1aad534 Update GenomixJobConf: must specify the kmerLength, extends JobConf by Jake Biesinger · 12 years ago
  82. 4f05864 Refactor configuration for all jobs into global GenomixJobConf by Jake Biesinger · 12 years ago