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hyracks
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d21026a43848fd37ef6440751454547c210da543
d21026a
shut down previous clusters again
by Jake Biesinger
· 12 years ago
2a30771
don't delete the default log directory on cluster shutdown
by Jake Biesinger
· 12 years ago
6f98c6f
read additional ports from .properties; launch multiple CC's on one machine(?)
by Jake Biesinger
· 12 years ago
f173509
tweak cluster shutdown
by Jake Biesinger
· 12 years ago
a56a98a
read FRAME_SIZE and FRAME_LIMIT from cluster.properties
by Jake Biesinger
· 12 years ago
7f546b5
Use maven-built app.home when run from Eclipse (mus trun mvn package once)
by Jake Biesinger
· 12 years ago
bb0540c
fix shutdown bug when -runLocal=false
by Jake Biesinger
· 12 years ago
3255cb1
move scripts back (can't run non-local eclipse without mvn package)
by Jake Biesinger
· 12 years ago
3fb78eb
move and chmod +x scripts in driver so eclipse can call the directly
by Jake Biesinger
· 12 years ago
2d358c6
runLocal is working but doesn't shut down properly
by Jake Biesinger
· 12 years ago
db95a42
only shut down pregelix cluster if it's running
by Jake Biesinger
· 12 years ago
0734cd2
STATS is a separate option and DUMP_FASTA can happen after any step
by Jake Biesinger
· 12 years ago
16a94ca
WIP: partial support for local/nonlocal for hadoop, hyracks and pregelix
by Jake Biesinger
· 12 years ago
b8ec304
fix framesize: 256MB buffer, 64k page
by Jake Biesinger
· 12 years ago
eb807a3
add scratch dir creator script in driver
by Jake Biesinger
· 12 years ago
f3e0fc6
only set kmerLength during first superstep in basicGraphCleanVertex
by Jake Biesinger
· 12 years ago
ee82213
increase default job history for adminconsole
by Jake Biesinger
· 12 years ago
76e2d7f
don't read global state during compute iterations
by Jake Biesinger
· 12 years ago
ed5a065
less aggressive and adjustable cluster wait times
by Jake Biesinger
· 12 years ago
f389e7e
tweak framesize
by Jake Biesinger
· 12 years ago
eecb337
increase wait time and add a shutdown hook that stops the clusters
by Jake Biesinger
· 12 years ago
2d72d3e
add -followsGraphBuild for those inputs proceeding build
by Jake Biesinger
· 12 years ago
8f6b461
refactor pregelix job creation
by Anbang Xu
· 12 years ago
33d8284
fix driverUtils string value
by Anbang Xu
· 12 years ago
a32d7ce
adjust job history size
by Nan Zhang
· 12 years ago
56af037
remove framesize from command-line parameters
by Jake Biesinger
· 12 years ago
6c4e526
read and set framesize from cluster.properties
by Jake Biesinger
· 12 years ago
b6ca725
add the option of frame size
by Nan Zhang
· 12 years ago
5cda522
format test case
by Anbang Xu
· 12 years ago
2246913
Small change
by Anbang Xu
· 12 years ago
a90fdd9
update pregelix vertexes to initialize static values
by Jake Biesinger
· 12 years ago
15b6f47
add MAX_READ_IDS_PER_EDGE in opts parser and jobs
by Jake Biesinger
· 12 years ago
d169c54
auto-discover CC port and IP settings (broke runLocal)
by Jake Biesinger
· 12 years ago
843db89
Don't use infiniband ports (look into in the future)
by Jake Biesinger
· 12 years ago
21bb3d6
don't reuse Hyracks CC in Pregelix jobs
by Jake Biesinger
· 12 years ago
4aa155f
increase wait time and defer creating the driver until NCs are active
by Jake Biesinger
· 12 years ago
284e5f1
use .pid files to track the CC and NC nodes
by Jake Biesinger
· 12 years ago
3bb11f5
move start/stop cluster in utils
by Jake Biesinger
· 12 years ago
aae579a
use app.home to get .properties files
by Jake Biesinger
· 12 years ago
f18eed5
Add some logging and attempt to shut down servers on exception
by Jake Biesinger
· 12 years ago
5936fcb
fix NPE
by Jake Biesinger
· 12 years ago
ddeb021
Split driver utilities into their own file
by Jake Biesinger
· 12 years ago
e643029
genomix driver is responsible for start/stop of Hyracks/Pregelix clusters
by Jake Biesinger
· 12 years ago
dc32cf2
separate NC's for pregelix and hyracks
by Jake Biesinger
· 12 years ago
11823d7
simpler commands for script GENOMIX_HOME resolution
by Jake Biesinger
· 12 years ago
d4b581c
Run cluster and driver scripts from anywhere
by Jake Biesinger
· 12 years ago
4aaa309
Merge branch 'genomix/experiment_master_genomix' into genomix/fullstack_genomix
by Nan Zhang
· 12 years ago
b89c7c5
Merge branch 'anbangx/fullstack_genomix' into genomix/fullstack_genomix
by Anbang Xu
· 12 years ago
a1b1e45
add simple command to each pattern
by Anbang Xu
· 12 years ago
86edb32
change command for scaffolding
by Anbang Xu
· 12 years ago
423fd16
Fix all synchronization issues
by Anbang Xu
· 12 years ago
81833a0
add scaffoldingAggregator
by Anbang Xu
· 12 years ago
ee7dac3
Add synchronization to static variable
by Anbang Xu
· 12 years ago
6a6ff67
modify the option of NlinesPerMap to false
by Nan Zhang
· 12 years ago
cf91139
remove incorrect expected file
by Nan Zhang
· 12 years ago
b9707dd
Merge branch 'master' into genomix/experiment_master_genomix
by Nan Zhang
· 12 years ago
73793d5
small change for rebase
by Nan Zhang
· 12 years ago
558ea60
Merge aggregator with main branch
by Anbang Xu
· 12 years ago
50b28b6
Adpat hadoop testsuite to have linespermap arg
by Anbang Xu
· 12 years ago
806ff79
add linesPerMap parameter to hadoop graph building driver
by Anbang Xu
· 12 years ago
4da15b2
add many similar bubbles in one pattern test case and BubbleMerge pass test
by Anbang Xu
· 12 years ago
a9c60b3
The aggregator for all the patterns are completed
by Anbang Xu
· 12 years ago
1aed014
add statistics counters to removeTip, pathMerge, removeBridge
by Anbang Xu
· 12 years ago
4e63417
fix location of stores.properties
by Jake Biesinger
· 12 years ago
dd63616
add stores.properties (deleted by?)
by Jake Biesinger
· 12 years ago
476760d
Add timed logging to genomix-driver jobs
by Jake Biesinger
· 12 years ago
7f2208f
PathMerge aggregator is completed
by Anbang Xu
· 12 years ago
52a279f
Aggregator passes test
by Anbang Xu
· 12 years ago
b1c7809
testing
by Anbang Xu
· 12 years ago
f3a548c
move aggregator output to test
by Anbang Xu
· 12 years ago
daa7780
fix NLineInputFormat for real
by Jake Biesinger
· 12 years ago
6ec5f66
don't use NLineInputFormat for now
by Jake Biesinger
· 12 years ago
ca28b1b
add StatisticsCounterAggregator
by Anbang Xu
· 12 years ago
270d47a
add NlineInputFormat
by Nan Zhang
· 12 years ago
0d0f899
use command-line args in genomix-driver
by Jake Biesinger
· 12 years ago
7ec10c1
Removed uneeded check.
by salsubaiee
· 12 years ago
014dafc
add graph building checking job
by Nan Zhang
· 12 years ago
7ac727c
Merge branch 'anbangx/fullstack_genomix' into genomix/fullstack_genomix
by Anbang Xu
· 12 years ago
14c34b0
change a method name and added comments.
by salsubaiee
· 12 years ago
676a268
stats are binned by whole value
by Jake Biesinger
· 12 years ago
affc0b4
toString's on edgeList and positionList are sorted
by Jake Biesinger
· 12 years ago
65ee367
add STATS and DUMP_FASTA steps to the graph (run locally)
by Jake Biesinger
· 12 years ago
9fdf74d
larger chunks for hadoop graphbuilding
by Jake Biesinger
· 12 years ago
5be5c46
fix coresPerMachine's default values
by Jake Biesinger
· 12 years ago
8c187a6
add RandonWalk test case
by Anbang Xu
· 12 years ago
88e9442
RemoveTip pass test
by Anbang Xu
· 12 years ago
e71a964
Unroll Repeat pass test
by Anbang Xu
· 12 years ago
28cbeae
save intermediate results by default (found a bug in pregelix-core?)
by Jake Biesinger
· 12 years ago
8b79c57
don't save intermediate results by default; add option to do so
by Jake Biesinger
· 12 years ago
67688c3
remove the genomix-pregelix testcase config files (again)
by Jake Biesinger
· 12 years ago
f9e6e5f
add hadoop building to the driver
by Jake Biesinger
· 12 years ago
17b99f2
add stop haltNode in pathmerge and fix the bug Jake mentioned
by Anbang Xu
· 12 years ago
39cfc58
add synthetic test case
by Jake Biesinger
· 12 years ago
9dec13e
remove generated genomix-pregel test case xml files
by Jake Biesinger
· 12 years ago
c2aa582
Merge branch 'anbangx/backupMergingWithMaster' into genomix/fullstack_genomix
by Jake Biesinger
· 12 years ago
1e03787
Merge branch 'anbangx/backupMergingWithMaster_errorcase' into wbiesing/merge_fs_backup
by Jake Biesinger
· 12 years ago
b19ba95
BubbleMerge pass complicated test cases
by Anbang Xu
· 12 years ago
2d1e203
Merge branch 'master' into salsubaiee/master_lsm
by salsubaiee
· 12 years ago
0fa1f5d
Revert a change that was done by mistake during a previous merge.
by salsubaiee
· 12 years ago
fc4fe25
add failing pathmerge testcase
by Jake Biesinger
· 12 years ago
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