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hyracks
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cc77cf78bed55e540a78d3484a766327917146db
cc77cf7
add test cases for path merge and other data clean patterns
by AnbangX
· 12 years ago
2c41eb3
add remove in PositionListWritable and test
by AnbangX
· 12 years ago
f60ef35
add test for graph build
by AnbangX
· 12 years ago
1e43ac4
Merge branch 'genomix/fullstack_genomix' of https://code.google.com/p/hyracks into jianfeng/genomix
by Jianfeng Jia
· 12 years ago
acde177
add unmerged option in hyracks graph building
by Jianfeng Jia
· 12 years ago
ec499a1
remove tips initial
by Jake Biesinger
· 12 years ago
82b237b
Better testing for initial path merge
by Jake Biesinger
· 12 years ago
09cf1d1
facilitate better testing via more constructors and proper hashing/equals
by Jake Biesinger
· 12 years ago
90752e7
non-path nodes are pushed to "complete" output
by Jake Biesinger
· 12 years ago
f608024
Merge branch 'anbangx/fullstack_genomix' of https://code.google.com/p/hyracks into anbangx/fullstack_genomix
by AnbangX
· 12 years ago
0d3ec57
update data clean 2013-06-06
by AnbangX
· 12 years ago
fd8c69a
update 2013-6-4
by Anbang Xu
· 12 years ago
0ae1c4c
add data clean
by AnbangX
· 12 years ago
3a52d79
update data clean 2013-06-06
by AnbangX
· 12 years ago
57971b6
path node works for complex starts
by Jake Biesinger
· 12 years ago
bc7e15f
Merge branch 'genomix/fullstack_genomix' into jianfeng/genomix
by Jianfeng Jia
· 12 years ago
0e69045
change iterator to for loop to save time.
by Jianfeng Jia
· 12 years ago
e0fa424
Update H4 to new graph style
by Jake Biesinger
· 12 years ago
5932b3b
fix test case paths
by Jake Biesinger
· 12 years ago
bf8f525
Fix spelling
by Jake Biesinger
· 12 years ago
658d9f2
update 2013-6-4
by Anbang Xu
· 12 years ago
f367fd5
add data clean
by AnbangX
· 12 years ago
c49f7b9
add warning of huge overlap
by Jianfeng Jia
· 12 years ago
471f75c
remove the "new" block.
by Jianfeng Jia
· 12 years ago
9ac3f6c
reformat
by Jake Biesinger
· 12 years ago
03364d3
restore strangely deleted MergePaths code
by Jake Biesinger
· 12 years ago
d91b4fb
Fix H3 test case
by Jake Biesinger
· 12 years ago
5215ff5
Updated base class for tests allows mutliple Test cases
by Jake Biesinger
· 12 years ago
79da38a
clean code
by Nan Zhang
· 12 years ago
5d3d527
delete he pcommon
by Nan Zhang
· 12 years ago
37cc20b
hadoop graph building completion
by Nan Zhang
· 12 years ago
e66c773
build graph
by Nan Zhang
· 12 years ago
eb8d72a
Merge commit '951870ef4642f2003c4240eeef702fc90600fe77' into nanzhang/genomix
by Nan Zhang
· 12 years ago
3a26a3a
merge with jianfeng-reverse
by Nan Zhang
· 12 years ago
951870e
Merge branch 'anbangx/fullstack_bidirection' of https://code.google.com/p/hyracks into anbangx/fullstack_bidirection
by AnbangX
· 12 years ago
631482f
add first small test case
by AnbangX
· 12 years ago
30f28d0
new code for bi-direction graph build
by AnbangX
· 12 years ago
b3de32e
add first small test case
by AnbangX
· 12 years ago
3931ef7
Broke test cases into base class plus small tests
by Jake Biesinger
· 12 years ago
a591f26
clean up code and add copyright header
by JavierJia
· 12 years ago
bbc4c23
Merge branch 'anbangx/fullstack_bidirection' of https://code.google.com/p/hyracks into anbangx/fullstack_bidirection
by AnbangX
· 12 years ago
297ea47
new code for bi-direction graph build
by AnbangX
· 12 years ago
cf718fb
new code for bi-direction graph build
by AnbangX
· 12 years ago
bf9401e
increase default frameSize to 128K
by Jianfeng Jia
· 12 years ago
8040709
add log to watch the tuple size
by Jianfeng Jia
· 12 years ago
12b4280
Merge branch 'jianfeng/genomix' into jianfeng/genomix-reverse
by Jianfeng Jia
· 12 years ago
5ba19e2
add more information for larger data debug
by Jianfeng Jia
· 12 years ago
genomix/unidirection
8a50889
fix outputKmerFactory racing problem
by Jianfeng Jia
· 12 years ago
33dc862
fix debugNc script
by JavierJia
· 12 years ago
dba2ebf
Merge branch 'jianfeng/genomix' into jianfeng/genomix-reverse
by Jianfeng Jia
· 12 years ago
22616cf
fixed the racing problem
by Jianfeng Jia
· 12 years ago
e7b1730
Merge branch 'genomix/fullstack_bidirection' into jianfeng/genomix-reverse
by Jianfeng Jia
· 12 years ago
edb2170
Merge branch 'wbiesing/genomix/h3' into jianfeng/genomix-reverse
by Jake Biesinger
· 12 years ago
f8261bc
Add a unit test for H3 which builds the graph
by Jake Biesinger
· 12 years ago
d23e0a7
Merge commit 'aa985fe572d4a78aa904a6d8524df96ef29db7ea' into nanzhang/genomix
by Nan Zhang
· 12 years ago
9bc1c38
modify building
by Nan Zhang
· 12 years ago
c7254f7
Merge branch 'jianfeng/genomix' of https://code.google.com/p/hyracks into jianfeng/genomix
by Jianfeng Jia
· 12 years ago
763ee99
fix builder.reset bug
by JavierJia
· 12 years ago
aa985fe
Merge branch 'jianfeng/genomix' into jianfeng/genomix-reverse
by Jianfeng Jia
· 12 years ago
1f37dce
fix builder.reset bug
by JavierJia
· 12 years ago
1d7de64
Merge branch 'jianfeng/genomix' into jianfeng/genomix-reverse
by Jianfeng Jia
· 12 years ago
923b215
Merge branch 'jianfeng/genomix' into genomix/fullstack_genomix
by Jianfeng Jia
· 12 years ago
1be1d3e
fix binary format test
by JavierJia
· 12 years ago
6e8b44b
change pom main class
by Jianfeng Jia
· 12 years ago
bb2dd3f
change main class
by Jianfeng Jia
· 12 years ago
48ef17c
Merge branch 'jianfeng/genomix-reverse' into genomix/fullstack_genomix
by Jianfeng Jia
· 12 years ago
f6640db
Passed test
by Jianfeng Jia
· 12 years ago
562116a
finished framework. not test yet
by Jianfeng Jia
· 12 years ago
8528899
finish framework
by Jianfeng Jia
· 12 years ago
c2a055b
new graph building progress
by Nan Zhang
· 12 years ago
006f744
Merge commit '983a7076e4b24cd421d16a3cd6987bc94275a2bc' into nanzhang/genomix
by Nan Zhang
· 12 years ago
1181e3c
modify the driver of velvet_graphbuilding
by Nan Zhang
· 12 years ago
983a707
Merge branch 'jianfeng/genomix' of https://code.google.com/p/hyracks into jianfeng/genomix
by Jianfeng Jia
· 12 years ago
5033f6f
Update comment.
by Jianfeng Jia
· 12 years ago
587ddb7
finished merge pre and merge next test
by Jianfeng Jia
· 12 years ago
c78dfa1
Update comment.
by Jianfeng Jia
· 12 years ago
ab90b1b
finished merge pre and merge next test
by Jianfeng Jia
· 12 years ago
7f506a1
modify the DeepGraphBuildingMapper
by Nan Zhang
· 12 years ago
e215121
Merge branch 'nanzhang/genomix' into genomix/fullstack_genomix
by Nan Zhang
· 12 years ago
b8ae860
modify the velvet-graph building package
by Nan Zhang
· 12 years ago
8663daa
Merge branch 'nanzhang/genomix' into genomix/fullstack_genomix
by Nan Zhang
· 12 years ago
d01123b
Use different initial and subsequent mappers in H3
by Jake Biesinger
· 12 years ago
01454bd
H3 implemented, untested
by Jake Biesinger
· 12 years ago
0669e98
add isPathNode to NodeWritable
by Jake Biesinger
· 12 years ago
d891139
WIP: H3 implementation, using multiple tails
by Jake Biesinger
· 12 years ago
7c14c8f
Merge branch 'genomix/fullstack_genomix' of https://code.google.com/p/hyracks into jianfeng/genomix
by Jianfeng Jia
· 12 years ago
369fccb
update the velvetGrapubuilding package
by Nan Zhang
· 12 years ago
f14c403
add mergeNext function to kmerWritable
by Jianfeng Jia
· 12 years ago
7636684
refine the logic of generate Node
by Jianfeng Jia
· 12 years ago
103df19
Merge branch 'genomix/fullstack_genomix' of https://code.google.com/p/hyracks into genomix/fullstack_genomix
by AnbangX
· 12 years ago
f5d6db9
change all input and output format to new version
by AnbangX
· 12 years ago
2c48b66
Merge branch 'nanzhang/genomix' into genomix/fullstack_genomix
by Nan Zhang
· 12 years ago
c49ce70
add package to build old package success
by Nan Zhang
· 12 years ago
a6e78ab
do some changes to test git rebase
by AnbangX
· 12 years ago
03e8b53
update gitignore
by Jianfeng Jia
· 12 years ago
529a089
finished EndToEnd test
by Jianfeng Jia
· 12 years ago
9804780
passed readid groupby test
by Jianfeng Jia
· 12 years ago
80b312a
passed map kmer to readid operator
by Jianfeng Jia
· 12 years ago
c2bb663
passed kmer groupby test
by Jianfeng Jia
· 12 years ago
c5172dd
reformat JobGen to avoid NonSerializable exception
by Jianfeng Jia
· 12 years ago
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