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asterix-gerrit.ics.uci.edu / hyracks / c71a2d3917db7c284997cc59910158ef90cbda45 / genomix / genomix-hadoop / src
  1. 76b3277 Merge branch 'genomix/fullstack_genomix' of https://code.google.com/p/hyracks into genomix/fullstack_genomix by Anbang Xu · 12 years ago
  2. f947fb8 add test suite case for removetip/removebridge/pathmerge by Anbang Xu · 12 years ago
  3. 54f79fb add expected output for pathmerge (singleread) by Jake Biesinger · 12 years ago
  4. fb347c0 Add test cases as input graphs by Jake Biesinger · 12 years ago
  5. 8f719e0 Use BuildAllGraphs by Jake Biesinger · 12 years ago
  6. d8f5c89 Formulate test code by Anbang Xu · 12 years ago
  7. 48c0cec q by Jake Biesinger · 12 years ago
  8. b679646 Add more test cases for path merge by Jake Biesinger · 12 years ago
  9. ac4a3fb add script for simple random read generation by Jake Biesinger · 12 years ago
  10. 4bb565e use argparse for python plotting by Jake Biesinger · 12 years ago
  11. 67e67aa more test cases by Jake Biesinger · 12 years ago
  12. c408358 Add python script for visualizing graphs by Jacob Biesinger · 12 years ago
  13. 2049ae8 Merge branch 'genomix/fullstack_genomix' of https://code.google.com/p/hyracks into genomix/fullstack_genomix by Jacob Biesinger · 12 years ago
  14. 5c0184f Merge branch 'genomix/fullstack_genomix' of https://code.google.com/p/hyracks into genomix/fullstack_genomix by Jake Biesinger · 12 years ago
  15. 8eac65c Add data for few test cases by Jake Biesinger · 12 years ago
  16. 6a6f6bc Fix old merge leftovers by Jacob Biesinger · 12 years ago
  17. b5c8428 test cases by AnbangX · 12 years ago
  18. 0fd527e Merge branch 'genomix/fullstack_genomix' of https://code.google.com/p/hyracks into genomix/fullstack_genomix by Jake Biesinger · 12 years ago
  19. 8c8f194 test cases by Jake Biesinger · 12 years ago
  20. 5c31812 Add expected outputs for a few simple tests by Jake Biesinger · 12 years ago
  21. 15d0a8f Add sequences for simple test cases by Jake Biesinger · 12 years ago
  22. 8e4fbc3 test cases and fixes for H4 by Jake Biesinger · 12 years ago
  23. 1dea1ea PathNodeInitial uses 2 output bins instead of 3 by Jake Biesinger · 12 years ago
  24. d31a1b4 use local maximum (not min) for h4 by Jake Biesinger · 12 years ago
  25. 93e9c22 debugging p4 and fix random seed issue by AnbangX · 12 years ago
  26. 98dae20 H4 complete; fix probBeingHead by Jake Biesinger · 12 years ago
  27. 21ad290 Code review with Jake on H4 by AnbangX · 12 years ago
  28. 26d9f46 Fix nodewritable merge logic by Jake Biesinger · 12 years ago
  29. af826b9 gc optimize h4 reduce by Jake Biesinger · 12 years ago
  30. 64ae953 Add mergeInDir for kmers by Jake Biesinger · 12 years ago
  31. db5d564 WIP H4 1 mapper + 2 reducers by Jake Biesinger · 12 years ago
  32. 974c47f refactor h4 update mapper to use update messages by Jake Biesinger · 12 years ago
  33. 5adaeec add merge and update utility functions by Jake Biesinger · 12 years ago
  34. 3cda435 Remove tests using MRUnit (whose old API doesn't work with MultipleOutputs) by Jake Biesinger · 12 years ago
  35. 1f0b7d5 refactor MergePaths message types to use directions and message types by Jake Biesinger · 12 years ago
  36. 3e70ffe PathNodeInitial updateable optimization by Jake Biesinger · 12 years ago
  37. 24e076f PathNodeInitial identifies nodes needing updates by Jake Biesinger · 12 years ago
  38. 1920264 refactor: MessageFlag is now MergeMessageFlag by Jake Biesinger · 12 years ago
  39. 7c1d870 H4 driver works with multipleOutputs by Jake Biesinger · 12 years ago
  40. f20a7e7 Fix path separators in test cases by Jake Biesinger · 12 years ago
  41. 76cc619 simplify graphbuilding driver by Jake Biesinger · 12 years ago
  42. 86e8c3a simplify driver and test case for h4 graph building by Jake Biesinger · 12 years ago
  43. 87a1029 mergepaths uses multipleoutputs properly (prep for update code) by Jake Biesinger · 12 years ago
  44. c0e90ce simplify hadoop graphbuilding test case by Jake Biesinger · 12 years ago
  45. ec499a1 remove tips initial by Jake Biesinger · 12 years ago
  46. 82b237b Better testing for initial path merge by Jake Biesinger · 12 years ago
  47. 09cf1d1 facilitate better testing via more constructors and proper hashing/equals by Jake Biesinger · 12 years ago
  48. 90752e7 non-path nodes are pushed to "complete" output by Jake Biesinger · 12 years ago
  49. 57971b6 path node works for complex starts by Jake Biesinger · 12 years ago
  50. e0fa424 Update H4 to new graph style by Jake Biesinger · 12 years ago
  51. 5932b3b fix test case paths by Jake Biesinger · 12 years ago
  52. bf8f525 Fix spelling by Jake Biesinger · 12 years ago
  53. 9ac3f6c reformat by Jake Biesinger · 12 years ago
  54. 03364d3 restore strangely deleted MergePaths code by Jake Biesinger · 12 years ago
  55. d91b4fb Fix H3 test case by Jake Biesinger · 12 years ago
  56. 5215ff5 Updated base class for tests allows mutliple Test cases by Jake Biesinger · 12 years ago
  57. 79da38a clean code by Nan Zhang · 12 years ago
  58. 5d3d527 delete he pcommon by Nan Zhang · 12 years ago
  59. 37cc20b hadoop graph building completion by Nan Zhang · 12 years ago
  60. e66c773 build graph by Nan Zhang · 12 years ago
  61. eb8d72a Merge commit '951870ef4642f2003c4240eeef702fc90600fe77' into nanzhang/genomix by Nan Zhang · 12 years ago
  62. 3a26a3a merge with jianfeng-reverse by Nan Zhang · 12 years ago
  63. 3931ef7 Broke test cases into base class plus small tests by Jake Biesinger · 12 years ago
  64. e7b1730 Merge branch 'genomix/fullstack_bidirection' into jianfeng/genomix-reverse by Jianfeng Jia · 12 years ago
  65. f8261bc Add a unit test for H3 which builds the graph by Jake Biesinger · 12 years ago
  66. 9bc1c38 modify building by Nan Zhang · 12 years ago
  67. c2a055b new graph building progress by Nan Zhang · 12 years ago
  68. 1181e3c modify the driver of velvet_graphbuilding by Nan Zhang · 12 years ago
  69. 7f506a1 modify the DeepGraphBuildingMapper by Nan Zhang · 12 years ago
  70. e215121 Merge branch 'nanzhang/genomix' into genomix/fullstack_genomix by Nan Zhang · 12 years ago
  71. b8ae860 modify the velvet-graph building package by Nan Zhang · 12 years ago
  72. 8663daa Merge branch 'nanzhang/genomix' into genomix/fullstack_genomix by Nan Zhang · 12 years ago
  73. d01123b Use different initial and subsequent mappers in H3 by Jake Biesinger · 12 years ago
  74. 01454bd H3 implemented, untested by Jake Biesinger · 12 years ago
  75. d891139 WIP: H3 implementation, using multiple tails by Jake Biesinger · 12 years ago
  76. 7c14c8f Merge branch 'genomix/fullstack_genomix' of https://code.google.com/p/hyracks into jianfeng/genomix by Jianfeng Jia · 12 years ago
  77. 369fccb update the velvetGrapubuilding package by Nan Zhang · 12 years ago
  78. c49ce70 add package to build old package success by Nan Zhang · 12 years ago
  79. a688f7d change name of one package by Nan Zhang · 12 years ago
  80. c61eeb4 Merge branch 'genomix/fullstack_genomix' into genomix/velvet_graphbuilding by Nan Zhang · 12 years ago
  81. cfb8871 delete the genomic.data.experiments by Nan Zhang · 12 years ago
  82. 006ff46 new package for path merge by Nan Zhang · 12 years ago
  83. b1ee50c merge path update by Nan Zhang · 12 years ago
  84. b52a13d new update for new version graph-building by Nan Zhang · 12 years ago
  85. 0047d3c after code view h1 h2 update by Nan Zhang · 12 years ago
  86. bef5ad0 Merge branch 'genomix/fullstack_genomix' of https://code.google.com/p/hyracks into genomix/fullstack_genomix by Nan Zhang · 12 years ago
  87. 9bb94d2 new GenomixMapper by Nan Zhang · 12 years ago
  88. c2aac14 new version of genomix graph building frameworks by Nan Zhang · 12 years ago
  89. 3991572 Merge branch 'genomix/fullstack_genomix' of https://code.google.com/p/hyracks into genomix/fullstack_genomix by Nan Zhang · 12 years ago
  90. 18a954f add new version graph building frameworks by Nan Zhang · 12 years ago
  91. c9d802a Remove mac .DS_Store files and ignore them in the future. by Jake Biesinger · 12 years ago
  92. dbc32ae adjust h1 code by hadoop · 12 years ago
  93. a71ef93 delete the endnodefile by hadoop · 12 years ago
  94. 42a210a change new name for hadoop program by hadoop · 12 years ago
  95. dfd15e1 change the test name by hadoop · 12 years ago
  96. ca08468 change name for files by hadoop · 12 years ago
  97. a3a8958 new h2 modified by hadoop · 12 years ago
  98. 5f3fce8 deleted all actual file by hadoop · 12 years ago
  99. 9f12f4e Merge branch 'fullstack_genomix' of https://code.google.com/p/hyracks into fullstack_genomix by hadoop · 12 years ago
  100. c07f6bf new h2 by hadoop · 12 years ago