Log - b5e81d63f0df64d46573e5304b68ff7dd02c8773 - hyracks

b5e81d6 Merge branch 'anbangx/fullstack_genomix' into genomix/fullstack_genomix by AnbangX · 12 years ago
e6d7e7a code review with Jake by AnbangX · 12 years ago
64ae953 Add mergeInDir for kmers by Jake Biesinger · 12 years ago
e1dbea7 add subclass BasicVertex and fixing p2 by AnbangX · 12 years ago
46fc86e add test cases for removeBridge, removeTip and mergeBubble by AnbangX · 12 years ago
db5d564 WIP H4 1 mapper + 2 reducers by Jake Biesinger · 12 years ago
5adaeec add merge and update utility functions by Jake Biesinger · 12 years ago
71ea5d2 Fix RFMerge and add tests by Jake Biesinger · 12 years ago
01ad7c2 Merge and fix FRMerge. RF still doesn't work. by Jake Biesinger · 12 years ago
ab171ba refactor kmer mergeNext and mergePre -> mergeFF etc. untested :) by Jake Biesinger · 12 years ago
a7216ac Add helper functions for mutating PositionListWritable's by Jake Biesinger · 12 years ago
24e076f PathNodeInitial identifies nodes needing updates by Jake Biesinger · 12 years ago
cc77cf7 add test cases for path merge and other data clean patterns by AnbangX · 12 years ago
2c41eb3 add remove in PositionListWritable and test by AnbangX · 12 years ago
1e43ac4 Merge branch 'genomix/fullstack_genomix' of https://code.google.com/p/hyracks into jianfeng/genomix by Jianfeng Jia · 12 years ago
09cf1d1 facilitate better testing via more constructors and proper hashing/equals by Jake Biesinger · 12 years ago
bc7e15f Merge branch 'genomix/fullstack_genomix' into jianfeng/genomix by Jianfeng Jia · 12 years ago
bf8f525 Fix spelling by Jake Biesinger · 12 years ago
37cc20b hadoop graph building completion by Nan Zhang · 12 years ago
eb8d72a Merge commit '951870ef4642f2003c4240eeef702fc90600fe77' into nanzhang/genomix by Nan Zhang · 12 years ago
3a26a3a merge with jianfeng-reverse by Nan Zhang · 12 years ago
a591f26 clean up code and add copyright header by JavierJia · 12 years ago
12b4280 Merge branch 'jianfeng/genomix' into jianfeng/genomix-reverse by Jianfeng Jia · 12 years ago
5ba19e2 add more information for larger data debug by Jianfeng Jia · 12 years ago genomix/unidirection
562116a finished framework. not test yet by Jianfeng Jia · 12 years ago
8528899 finish framework by Jianfeng Jia · 12 years ago
5033f6f Update comment. by Jianfeng Jia · 12 years ago
587ddb7 finished merge pre and merge next test by Jianfeng Jia · 12 years ago
7f506a1 modify the DeepGraphBuildingMapper by Nan Zhang · 12 years ago
8663daa Merge branch 'nanzhang/genomix' into genomix/fullstack_genomix by Nan Zhang · 12 years ago
0669e98 add isPathNode to NodeWritable by Jake Biesinger · 12 years ago
7c14c8f Merge branch 'genomix/fullstack_genomix' of https://code.google.com/p/hyracks into jianfeng/genomix by Jianfeng Jia · 12 years ago
369fccb update the velvetGrapubuilding package by Nan Zhang · 12 years ago
f14c403 add mergeNext function to kmerWritable by Jianfeng Jia · 12 years ago
7636684 refine the logic of generate Node by Jianfeng Jia · 12 years ago
103df19 Merge branch 'genomix/fullstack_genomix' of https://code.google.com/p/hyracks into genomix/fullstack_genomix by AnbangX · 12 years ago
f5d6db9 change all input and output format to new version by AnbangX · 12 years ago
c49ce70 add package to build old package success by Nan Zhang · 12 years ago
529a089 finished EndToEnd test by Jianfeng Jia · 12 years ago
80b312a passed map kmer to readid operator by Jianfeng Jia · 12 years ago
ee2e038 finished test framework by JavierJia · 12 years ago
1d11e0a finish position test by JavierJia · 12 years ago
5d192ad finished genomix-hyracks end to end by JavierJia · 12 years ago
e85c8a7 merge with hadoop code by JavierJia · 12 years ago
ee1fa17 Merge branch 'genomix/velvet_graphbuilding' of https://code.google.com/p/hyracks into genomix/velvet_graphbuilding by JavierJia · 12 years ago
fe1391a passed genomix-data test by JavierJia · 12 years ago
e34200e create some writable based on Jianfeng's hyracks by Nan Zhang · 12 years ago
ba0d0d8 clean up kmerWritable by JavierJia · 12 years ago
4c33a7a finished framework by JavierJia · 12 years ago
136c411 finish mapKmerToReadID by JavierJia · 12 years ago
4803aea compatible with invalid read by Jianfeng Jia · 12 years ago
0495424 supprt zero-length kmer setting by JavierJia · 12 years ago
e83982b add clearLeadBit into KmerOperation by JavierJia · 12 years ago
3c3f2b7 Change return value of shiftKmer from bitmap to genecode by JavierJia · 12 years ago
bc974c4 change comparitor by JavierJia · 12 years ago
25e22f1 add protect to array index overflow by JavierJia · 12 years ago
483934a add getSubKmer function by JavierJia · 12 years ago
0076326 add default empty constructor for hadoop version by JavierJia · 12 years ago
0a7f115 make genomix-hyracks pass the test by JavierJia · 12 years ago
2bfbe83 add back old version of Kmer to support genomix-pregelix by JavierJia · 12 years ago
0c37dd0 make genomix-hadoop genomix-hyracks compilable by JavierJia · 12 years ago
be165dd split Kmer into fixsize Kmer and variablesize VKmer by JavierJia · 12 years ago
48a21c3 make genomix-data test passed by JavierJia · 12 years ago
97d4eed clear unset bit by Jianfeng Jia · 12 years ago
99641ad fix the bugs of mergeTwoKmer when nextK mod 4 == 0 by Jianfeng Jia · 12 years ago
74b72ca change fix bytes array to flexible bytes with offset and length in KmerUtil by jianfeng.jia@gmail.com · 12 years ago
c410249 hadoop pathmerge h1 algorithm by zhangnan2920214@gmail.com · 12 years ago
cdc5917 upload the graph of the test case by anbangx · 12 years ago
39e72c7 fix KmerUtil.mergeTwoKmer bug while merging 1byte nextKmer by jianfeng.jia@gmail.com · 12 years ago
4e57def add some comment on KmerUtil by jianfeng.jia@gmail.com · 12 years ago
14e6742 add shiftKmer into KmerUtil by jianfeng.jia@gmail.com · 12 years ago
4ead7d4 add convertion from bitmap to gencode by jianfeng.jia@gmail.com · 12 years ago
5842ee3 add KmerUtil for merge or join operation by jianfeng.jia@gmail.com · 12 years ago
d5b6dc7 add reversed kmer option by jianfeng.jia@gmail.com · 12 years ago
f1bf6d5 add timer by anbangx · 12 years ago
4604dee new genomix-data by zhangnan2920214@gmail.com · 12 years ago
7ed56e7 new genomix-data by zhangnan2920214@gmail.com · 12 years ago
6ed83cb fix sequecefile.reader problem by jianfeng.jia@gmail.com · 12 years ago
7b6a3c7 change to genomix-data by jianfeng.jia@gmail.com · 12 years ago