Log - ad800e891748058af6f3e843b5696e9a4a932aea - hyracks

79c5ccf Merge branch 'wbiesing/genomix/VKmers' into genomix/fullstack_genomix by Jake Biesinger · 12 years ago
aac7732 SimpleSplitRepeat is completed. An issue in graph building(hadoop): KmerList.appendList() doesn't check existed element by Anbang Xu · 12 years ago
1259632 refactor KmerList -> VKmerList by Jake Biesinger · 12 years ago
0f06660 start dependency refactor by Jake Biesinger · 12 years ago
b811143 Refactor KmerBytesWritable to use internal length by Jake Biesinger · 12 years ago
4416d3c debugging p4 by Anbang Xu · 12 years ago
dfa14d3 Fix NodeWritable and Finish contrail-graph Mapper/Reducer by Anbang Xu · 12 years ago genomix/velvet-graph-pregel
84e385f Try to add globe kmerSize but fail in testing by Anbang Xu · 12 years ago
bcf5a70 add hadoop test and keep both bin and txt by Anbang Xu · 12 years ago
f7a23e4 add Reducer and change PositionWritable to PositionListWritable in NodeWritable by Anbang Xu · 12 years ago
0c644f4 Mapper passes test by Anbang Xu · 12 years ago
32bc798 finish Mapper and start Reducer by Anbang Xu · 12 years ago
4e9262f add GenomixMapper for new graph - 'contrail' by Anbang Xu · 12 years ago
3335bb6 hadoop for contrail graph by Anbang Xu · 12 years ago
8dbe728 refactor 'size' to 'kmerByteSize' in KmerBytesWritable by Anbang Xu · 12 years ago
6b45971 Fix H4, test templates by Jake Biesinger · 12 years ago
970c74f move old key/value class to oldtype folder by Anbang Xu · 12 years ago
6a6f6bc Fix old merge leftovers by Jacob Biesinger · 12 years ago
b5c8428 test cases by AnbangX · 12 years ago
8c8f194 test cases by Jake Biesinger · 12 years ago
8e4fbc3 test cases and fixes for H4 by Jake Biesinger · 12 years ago
1dea1ea PathNodeInitial uses 2 output bins instead of 3 by Jake Biesinger · 12 years ago
d31a1b4 use local maximum (not min) for h4 by Jake Biesinger · 12 years ago
93e9c22 debugging p4 and fix random seed issue by AnbangX · 12 years ago
98dae20 H4 complete; fix probBeingHead by Jake Biesinger · 12 years ago
21ad290 Code review with Jake on H4 by AnbangX · 12 years ago
26d9f46 Fix nodewritable merge logic by Jake Biesinger · 12 years ago
af826b9 gc optimize h4 reduce by Jake Biesinger · 12 years ago
64ae953 Add mergeInDir for kmers by Jake Biesinger · 12 years ago
db5d564 WIP H4 1 mapper + 2 reducers by Jake Biesinger · 12 years ago
974c47f refactor h4 update mapper to use update messages by Jake Biesinger · 12 years ago
5adaeec add merge and update utility functions by Jake Biesinger · 12 years ago
1f0b7d5 refactor MergePaths message types to use directions and message types by Jake Biesinger · 12 years ago
3e70ffe PathNodeInitial updateable optimization by Jake Biesinger · 12 years ago
24e076f PathNodeInitial identifies nodes needing updates by Jake Biesinger · 12 years ago
1920264 refactor: MessageFlag is now MergeMessageFlag by Jake Biesinger · 12 years ago
7c1d870 H4 driver works with multipleOutputs by Jake Biesinger · 12 years ago
f20a7e7 Fix path separators in test cases by Jake Biesinger · 12 years ago
76cc619 simplify graphbuilding driver by Jake Biesinger · 12 years ago
86e8c3a simplify driver and test case for h4 graph building by Jake Biesinger · 12 years ago
87a1029 mergepaths uses multipleoutputs properly (prep for update code) by Jake Biesinger · 12 years ago
ec499a1 remove tips initial by Jake Biesinger · 12 years ago
82b237b Better testing for initial path merge by Jake Biesinger · 12 years ago
09cf1d1 facilitate better testing via more constructors and proper hashing/equals by Jake Biesinger · 12 years ago
90752e7 non-path nodes are pushed to "complete" output by Jake Biesinger · 12 years ago
57971b6 path node works for complex starts by Jake Biesinger · 12 years ago
e0fa424 Update H4 to new graph style by Jake Biesinger · 12 years ago
5932b3b fix test case paths by Jake Biesinger · 12 years ago
bf8f525 Fix spelling by Jake Biesinger · 12 years ago
9ac3f6c reformat by Jake Biesinger · 12 years ago
03364d3 restore strangely deleted MergePaths code by Jake Biesinger · 12 years ago
d91b4fb Fix H3 test case by Jake Biesinger · 12 years ago
5215ff5 Updated base class for tests allows mutliple Test cases by Jake Biesinger · 12 years ago
79da38a clean code by Nan Zhang · 12 years ago
37cc20b hadoop graph building completion by Nan Zhang · 12 years ago
e66c773 build graph by Nan Zhang · 12 years ago
3a26a3a merge with jianfeng-reverse by Nan Zhang · 12 years ago
9bc1c38 modify building by Nan Zhang · 12 years ago
c2a055b new graph building progress by Nan Zhang · 12 years ago
1181e3c modify the driver of velvet_graphbuilding by Nan Zhang · 12 years ago
7f506a1 modify the DeepGraphBuildingMapper by Nan Zhang · 12 years ago
e215121 Merge branch 'nanzhang/genomix' into genomix/fullstack_genomix by Nan Zhang · 12 years ago
b8ae860 modify the velvet-graph building package by Nan Zhang · 12 years ago
8663daa Merge branch 'nanzhang/genomix' into genomix/fullstack_genomix by Nan Zhang · 12 years ago
d01123b Use different initial and subsequent mappers in H3 by Jake Biesinger · 12 years ago
01454bd H3 implemented, untested by Jake Biesinger · 12 years ago
d891139 WIP: H3 implementation, using multiple tails by Jake Biesinger · 12 years ago
7c14c8f Merge branch 'genomix/fullstack_genomix' of https://code.google.com/p/hyracks into jianfeng/genomix by Jianfeng Jia · 12 years ago
369fccb update the velvetGrapubuilding package by Nan Zhang · 12 years ago
c49ce70 add package to build old package success by Nan Zhang · 12 years ago
a688f7d change name of one package by Nan Zhang · 12 years ago
c61eeb4 Merge branch 'genomix/fullstack_genomix' into genomix/velvet_graphbuilding by Nan Zhang · 12 years ago
cfb8871 delete the genomic.data.experiments by Nan Zhang · 12 years ago
006ff46 new package for path merge by Nan Zhang · 12 years ago
b1ee50c merge path update by Nan Zhang · 12 years ago
b52a13d new update for new version graph-building by Nan Zhang · 12 years ago
0047d3c after code view h1 h2 update by Nan Zhang · 12 years ago
bef5ad0 Merge branch 'genomix/fullstack_genomix' of https://code.google.com/p/hyracks into genomix/fullstack_genomix by Nan Zhang · 12 years ago
9bb94d2 new GenomixMapper by Nan Zhang · 12 years ago
c2aac14 new version of genomix graph building frameworks by Nan Zhang · 12 years ago
3991572 Merge branch 'genomix/fullstack_genomix' of https://code.google.com/p/hyracks into genomix/fullstack_genomix by Nan Zhang · 12 years ago
18a954f add new version graph building frameworks by Nan Zhang · 12 years ago
c9d802a Remove mac .DS_Store files and ignore them in the future. by Jake Biesinger · 12 years ago
dbc32ae adjust h1 code by hadoop · 12 years ago
a71ef93 delete the endnodefile by hadoop · 12 years ago
42a210a change new name for hadoop program by hadoop · 12 years ago
ca08468 change name for files by hadoop · 12 years ago
a3a8958 new h2 modified by hadoop · 12 years ago
5f3fce8 deleted all actual file by hadoop · 12 years ago
9f12f4e Merge branch 'fullstack_genomix' of https://code.google.com/p/hyracks into fullstack_genomix by hadoop · 12 years ago
c07f6bf new h2 by hadoop · 12 years ago
8824dde Merge branch 'fullstack_genomix' of https://code.google.com/p/hyracks into fullstack_genomix by hadoop · 12 years ago
3c3f2b7 Change return value of shiftKmer from bitmap to genecode by JavierJia · 12 years ago
00f6336 h2h2 by hadoop · 12 years ago
99f0202 Please enter the commit message for your changes. Lines starting by hadoop · 12 years ago
4163db2 h1 changes by hadoop · 12 years ago
0c37dd0 make genomix-hadoop genomix-hyracks compilable by JavierJia · 12 years ago
74b72ca change fix bytes array to flexible bytes with offset and length in KmerUtil by jianfeng.jia@gmail.com · 12 years ago
8a89876 hadoop pathmerge h1 algorithm by zhangnan2920214@gmail.com · 12 years ago
c410249 hadoop pathmerge h1 algorithm by zhangnan2920214@gmail.com · 12 years ago