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asterix-gerrit.ics.uci.edu / hyracks / ad0a538a59f01771e50c9bba36dcb3552a92acad
  1. ad0a538 complete the dataflow of hyracks by Nan Zhang · 12 years ago
  2. 67c5eef Merge branch 'genomix/fullstack_genomix' into nanzhang/hyracks_genomix by Nan Zhang · 12 years ago
  3. 4d50d8a Merge branch 'genomix/fullstack_genomix' into nanzhang/hyracks_genomix by Nan Zhang · 12 years ago
  4. a5e97c7 p4 pass test by Anbang Xu · 12 years ago
  5. 4416d3c debugging p4 by Anbang Xu · 12 years ago
  6. 311001a start to change graph clean part to 'contrail-graph' structure by Anbang Xu · 12 years ago
  7. dfa14d3 Fix NodeWritable and Finish contrail-graph Mapper/Reducer by Anbang Xu · 12 years ago genomix/velvet-graph-pregel
  8. 95138a4 hyracks contrail graph building partial completing by Nan Zhang · 12 years ago
  9. 84e385f Try to add globe kmerSize but fail in testing by Anbang Xu · 12 years ago
  10. bcf5a70 add hadoop test and keep both bin and txt by Anbang Xu · 12 years ago
  11. f7a23e4 add Reducer and change PositionWritable to PositionListWritable in NodeWritable by Anbang Xu · 12 years ago
  12. 0c644f4 Mapper passes test by Anbang Xu · 12 years ago
  13. 32bc798 finish Mapper and start Reducer by Anbang Xu · 12 years ago
  14. 4e9262f add GenomixMapper for new graph - 'contrail' by Anbang Xu · 12 years ago
  15. 3335bb6 hadoop for contrail graph by Anbang Xu · 12 years ago
  16. 08c7d2d change KmerListWritable and NodeWritable to new construction for new graph-'Kmer-Base system as key' by Anbang Xu · 12 years ago
  17. b14e7e6 Update for changing graph by Anbang Xu · 12 years ago
  18. 8dbe728 refactor 'size' to 'kmerByteSize' in KmerBytesWritable by Anbang Xu · 12 years ago
  19. f7fc945 refactor 'UniqueKey' to 'NodeId' by Anbang Xu · 12 years ago
  20. 6350b0f some changes in ParserFactory by Anbang Xu · 12 years ago
  21. 1a02870 add ReadsKeyValueParserFactory for new graph using for read HDFS by Anbang Xu · 12 years ago
  22. 871743c add IntermediateNodeWritable and KmerListWritable by Anbang Xu · 12 years ago
  23. c642eeb new graph driver by Anbang Xu · 12 years ago
  24. 0a8e068 add makeUUID to PositionWritable; use for test cases by Jake Biesinger · 12 years ago
  25. aef7aaa meatier test case and tweaks for PositionWritable by Jake Biesinger · 12 years ago
  26. a9eafe7 Make PositionListWritable test code by Anbang Xu · 12 years ago
  27. 67254bc Merge branch 'anbangx/fullstack_genomix' into genomix/fullstack_genomix by Anbang Xu · 12 years ago
  28. 6010f35 Make the PositionWritable and Pass the test by Anbang Xu · 12 years ago
  29. 6b45971 Fix H4, test templates by Jake Biesinger · 12 years ago
  30. de2424c begin new graph building by Anbang Xu · 12 years ago
  31. de2a44b small adjustments to new node and position classes by Jake Biesinger · 12 years ago
  32. 970c74f move old key/value class to oldtype folder by Anbang Xu · 12 years ago
  33. 814540a remake new graph class - PositionWritable and NodeWritable by Anbang Xu · 12 years ago
  34. c71a2d3 removeBridge pass tests by Anbang Xu · 12 years ago Alpha Alpha-Graph-v2.0
  35. b1ccba9 p4 pass test by Anbang Xu · 12 years ago
  36. b3c4a2b removeTip pass all the tests by Anbang Xu · 12 years ago
  37. 9378de1 change directionFlag back by Anbang Xu · 12 years ago
  38. 3054c15 clear the code and fix messageFlag by Anbang Xu · 12 years ago
  39. 76b3277 Merge branch 'genomix/fullstack_genomix' of https://code.google.com/p/hyracks into genomix/fullstack_genomix by Anbang Xu · 12 years ago
  40. f947fb8 add test suite case for removetip/removebridge/pathmerge by Anbang Xu · 12 years ago
  41. 54f79fb add expected output for pathmerge (singleread) by Jake Biesinger · 12 years ago
  42. fb347c0 Add test cases as input graphs by Jake Biesinger · 12 years ago
  43. 8f719e0 Use BuildAllGraphs by Jake Biesinger · 12 years ago
  44. d8f5c89 Formulate test code by Anbang Xu · 12 years ago
  45. 48c0cec q by Jake Biesinger · 12 years ago
  46. b679646 Add more test cases for path merge by Jake Biesinger · 12 years ago
  47. ac4a3fb add script for simple random read generation by Jake Biesinger · 12 years ago
  48. 4bb565e use argparse for python plotting by Jake Biesinger · 12 years ago
  49. 67e67aa more test cases by Jake Biesinger · 12 years ago
  50. c408358 Add python script for visualizing graphs by Jacob Biesinger · 12 years ago
  51. 2049ae8 Merge branch 'genomix/fullstack_genomix' of https://code.google.com/p/hyracks into genomix/fullstack_genomix by Jacob Biesinger · 12 years ago
  52. 5c0184f Merge branch 'genomix/fullstack_genomix' of https://code.google.com/p/hyracks into genomix/fullstack_genomix by Jake Biesinger · 12 years ago
  53. 8eac65c Add data for few test cases by Jake Biesinger · 12 years ago
  54. 6a6f6bc Fix old merge leftovers by Jacob Biesinger · 12 years ago
  55. b5c8428 test cases by AnbangX · 12 years ago
  56. da3b802 Apply undirected graph algorithm in p2 by AnbangX · 12 years ago
  57. 0fd527e Merge branch 'genomix/fullstack_genomix' of https://code.google.com/p/hyracks into genomix/fullstack_genomix by Jake Biesinger · 12 years ago
  58. 8c8f194 test cases by Jake Biesinger · 12 years ago
  59. 5c31812 Add expected outputs for a few simple tests by Jake Biesinger · 12 years ago
  60. 15d0a8f Add sequences for simple test cases by Jake Biesinger · 12 years ago
  61. 8e4fbc3 test cases and fixes for H4 by Jake Biesinger · 12 years ago
  62. 1dea1ea PathNodeInitial uses 2 output bins instead of 3 by Jake Biesinger · 12 years ago
  63. d31a1b4 use local maximum (not min) for h4 by Jake Biesinger · 12 years ago
  64. 93e9c22 debugging p4 and fix random seed issue by AnbangX · 12 years ago
  65. 98dae20 H4 complete; fix probBeingHead by Jake Biesinger · 12 years ago
  66. 21ad290 Code review with Jake on H4 by AnbangX · 12 years ago
  67. b5e81d6 Merge branch 'anbangx/fullstack_genomix' into genomix/fullstack_genomix by AnbangX · 12 years ago
  68. e6d7e7a code review with Jake by AnbangX · 12 years ago
  69. 26d9f46 Fix nodewritable merge logic by Jake Biesinger · 12 years ago
  70. af826b9 gc optimize h4 reduce by Jake Biesinger · 12 years ago
  71. 64ae953 Add mergeInDir for kmers by Jake Biesinger · 12 years ago
  72. 3819c94 add stop condition for p2 by AnbangX · 12 years ago
  73. 74c645c send msg to bidirection in p2 by AnbangX · 12 years ago
  74. e1dbea7 add subclass BasicVertex and fixing p2 by AnbangX · 12 years ago
  75. d2e7e86 fix path merge flaws by AnbangX · 12 years ago genomix/one_direction v2.0
  76. 8f57673 Merge branch 'anbangx/fullstack_genomix' of https://code.google.com/p/hyracks into anbangx/fullstack_genomix by AnbangX · 12 years ago
  77. 2a9137c finish p4 by AnbangX · 12 years ago
  78. b7b66eb correct p4 by AnbangX · 12 years ago
  79. 730ed8a some updates by AnbangX · 12 years ago
  80. 342d65b add p4 for path merge by AnbangX · 12 years ago
  81. 7984e2b p3 path merge pass test by AnbangX · 12 years ago
  82. 46fc86e add test cases for removeBridge, removeTip and mergeBubble by AnbangX · 12 years ago
  83. db5d564 WIP H4 1 mapper + 2 reducers by Jake Biesinger · 12 years ago
  84. 974c47f refactor h4 update mapper to use update messages by Jake Biesinger · 12 years ago
  85. 5adaeec add merge and update utility functions by Jake Biesinger · 12 years ago
  86. 605a5e8 finish p4 by AnbangX · 12 years ago
  87. 3cda435 Remove tests using MRUnit (whose old API doesn't work with MultipleOutputs) by Jake Biesinger · 12 years ago
  88. 71ea5d2 Fix RFMerge and add tests by Jake Biesinger · 12 years ago
  89. fd9b4b1 correct p4 by AnbangX · 12 years ago
  90. 0d0e1fe some updates by AnbangX · 12 years ago
  91. 01ad7c2 Merge and fix FRMerge. RF still doesn't work. by Jake Biesinger · 12 years ago
  92. 244a3a8 Merge branch 'genomix/fullstack_genomix' into wbiesing/genomix/fullstack_genomix by Jake Biesinger · 12 years ago
  93. ce47851 add p4 for path merge by AnbangX · 12 years ago
  94. ab171ba refactor kmer mergeNext and mergePre -> mergeFF etc. untested :) by Jake Biesinger · 12 years ago
  95. 1f0b7d5 refactor MergePaths message types to use directions and message types by Jake Biesinger · 12 years ago
  96. a7216ac Add helper functions for mutating PositionListWritable's by Jake Biesinger · 12 years ago
  97. 3e70ffe PathNodeInitial updateable optimization by Jake Biesinger · 12 years ago
  98. 24e076f PathNodeInitial identifies nodes needing updates by Jake Biesinger · 12 years ago
  99. 0c08e56 p3 path merge pass test by AnbangX · 12 years ago
  100. 1920264 refactor: MessageFlag is now MergeMessageFlag by Jake Biesinger · 12 years ago