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asterix-gerrit.ics.uci.edu / hyracks / a9f475df0c5baa528f1918d2453562f3a3e45d09 / genomix
  1. a9f475d use $IO_DIRS, not -coresPerMachine for hyracks partitions + hadoop #reducers by Jake Biesinger · 12 years ago
  2. 6dfc4bb Hadoop graphbuild works! by Jake Biesinger · 12 years ago
  3. b0aed82 hadoop dist cache must be an absolute path by Jake Biesinger · 12 years ago
  4. 7294ef7 hadoop jar deployment fix by Jake Biesinger · 12 years ago
  5. d21026a shut down previous clusters again by Jake Biesinger · 12 years ago
  6. 2a30771 don't delete the default log directory on cluster shutdown by Jake Biesinger · 12 years ago
  7. 6f98c6f read additional ports from .properties; launch multiple CC's on one machine(?) by Jake Biesinger · 12 years ago
  8. f173509 tweak cluster shutdown by Jake Biesinger · 12 years ago
  9. a56a98a read FRAME_SIZE and FRAME_LIMIT from cluster.properties by Jake Biesinger · 12 years ago
  10. 7f546b5 Use maven-built app.home when run from Eclipse (mus trun mvn package once) by Jake Biesinger · 12 years ago
  11. bb0540c fix shutdown bug when -runLocal=false by Jake Biesinger · 12 years ago
  12. 3255cb1 move scripts back (can't run non-local eclipse without mvn package) by Jake Biesinger · 12 years ago
  13. 3fb78eb move and chmod +x scripts in driver so eclipse can call the directly by Jake Biesinger · 12 years ago
  14. 2d358c6 runLocal is working but doesn't shut down properly by Jake Biesinger · 12 years ago
  15. db95a42 only shut down pregelix cluster if it's running by Jake Biesinger · 12 years ago
  16. 0734cd2 STATS is a separate option and DUMP_FASTA can happen after any step by Jake Biesinger · 12 years ago
  17. 16a94ca WIP: partial support for local/nonlocal for hadoop, hyracks and pregelix by Jake Biesinger · 12 years ago
  18. b8ec304 fix framesize: 256MB buffer, 64k page by Jake Biesinger · 12 years ago
  19. eb807a3 add scratch dir creator script in driver by Jake Biesinger · 12 years ago
  20. f3e0fc6 only set kmerLength during first superstep in basicGraphCleanVertex by Jake Biesinger · 12 years ago
  21. ee82213 increase default job history for adminconsole by Jake Biesinger · 12 years ago
  22. 76e2d7f don't read global state during compute iterations by Jake Biesinger · 12 years ago
  23. ed5a065 less aggressive and adjustable cluster wait times by Jake Biesinger · 12 years ago
  24. f389e7e tweak framesize by Jake Biesinger · 12 years ago
  25. eecb337 increase wait time and add a shutdown hook that stops the clusters by Jake Biesinger · 12 years ago
  26. 2d72d3e add -followsGraphBuild for those inputs proceeding build by Jake Biesinger · 12 years ago
  27. 8f6b461 refactor pregelix job creation by Anbang Xu · 12 years ago
  28. 33d8284 fix driverUtils string value by Anbang Xu · 12 years ago
  29. a32d7ce adjust job history size by Nan Zhang · 12 years ago
  30. 56af037 remove framesize from command-line parameters by Jake Biesinger · 12 years ago
  31. 6c4e526 read and set framesize from cluster.properties by Jake Biesinger · 12 years ago
  32. b6ca725 add the option of frame size by Nan Zhang · 12 years ago
  33. 5cda522 format test case by Anbang Xu · 12 years ago
  34. 2246913 Small change by Anbang Xu · 12 years ago
  35. a90fdd9 update pregelix vertexes to initialize static values by Jake Biesinger · 12 years ago
  36. 15b6f47 add MAX_READ_IDS_PER_EDGE in opts parser and jobs by Jake Biesinger · 12 years ago
  37. d169c54 auto-discover CC port and IP settings (broke runLocal) by Jake Biesinger · 12 years ago
  38. 843db89 Don't use infiniband ports (look into in the future) by Jake Biesinger · 12 years ago
  39. 21bb3d6 don't reuse Hyracks CC in Pregelix jobs by Jake Biesinger · 12 years ago
  40. 4aa155f increase wait time and defer creating the driver until NCs are active by Jake Biesinger · 12 years ago
  41. 284e5f1 use .pid files to track the CC and NC nodes by Jake Biesinger · 12 years ago
  42. 3bb11f5 move start/stop cluster in utils by Jake Biesinger · 12 years ago
  43. f18eed5 Add some logging and attempt to shut down servers on exception by Jake Biesinger · 12 years ago
  44. 5936fcb fix NPE by Jake Biesinger · 12 years ago
  45. ddeb021 Split driver utilities into their own file by Jake Biesinger · 12 years ago
  46. e643029 genomix driver is responsible for start/stop of Hyracks/Pregelix clusters by Jake Biesinger · 12 years ago
  47. dc32cf2 separate NC's for pregelix and hyracks by Jake Biesinger · 12 years ago
  48. 11823d7 simpler commands for script GENOMIX_HOME resolution by Jake Biesinger · 12 years ago
  49. d4b581c Run cluster and driver scripts from anywhere by Jake Biesinger · 12 years ago
  50. 4aaa309 Merge branch 'genomix/experiment_master_genomix' into genomix/fullstack_genomix by Nan Zhang · 12 years ago
  51. b89c7c5 Merge branch 'anbangx/fullstack_genomix' into genomix/fullstack_genomix by Anbang Xu · 12 years ago
  52. a1b1e45 add simple command to each pattern by Anbang Xu · 12 years ago
  53. 86edb32 change command for scaffolding by Anbang Xu · 12 years ago
  54. 423fd16 Fix all synchronization issues by Anbang Xu · 12 years ago
  55. 81833a0 add scaffoldingAggregator by Anbang Xu · 12 years ago
  56. ee7dac3 Add synchronization to static variable by Anbang Xu · 12 years ago
  57. 6a6ff67 modify the option of NlinesPerMap to false by Nan Zhang · 12 years ago
  58. cf91139 remove incorrect expected file by Nan Zhang · 12 years ago
  59. 73793d5 small change for rebase by Nan Zhang · 12 years ago
  60. 558ea60 Merge aggregator with main branch by Anbang Xu · 12 years ago
  61. 50b28b6 Adpat hadoop testsuite to have linespermap arg by Anbang Xu · 12 years ago
  62. 806ff79 add linesPerMap parameter to hadoop graph building driver by Anbang Xu · 12 years ago
  63. 4da15b2 add many similar bubbles in one pattern test case and BubbleMerge pass test by Anbang Xu · 12 years ago
  64. a9c60b3 The aggregator for all the patterns are completed by Anbang Xu · 12 years ago
  65. 1aed014 add statistics counters to removeTip, pathMerge, removeBridge by Anbang Xu · 12 years ago
  66. 4e63417 fix location of stores.properties by Jake Biesinger · 12 years ago
  67. dd63616 add stores.properties (deleted by?) by Jake Biesinger · 12 years ago
  68. 476760d Add timed logging to genomix-driver jobs by Jake Biesinger · 12 years ago
  69. 7f2208f PathMerge aggregator is completed by Anbang Xu · 12 years ago
  70. 52a279f Aggregator passes test by Anbang Xu · 12 years ago
  71. b1c7809 testing by Anbang Xu · 12 years ago
  72. f3a548c move aggregator output to test by Anbang Xu · 12 years ago
  73. daa7780 fix NLineInputFormat for real by Jake Biesinger · 12 years ago
  74. 6ec5f66 don't use NLineInputFormat for now by Jake Biesinger · 12 years ago
  75. ca28b1b add StatisticsCounterAggregator by Anbang Xu · 12 years ago
  76. 270d47a add NlineInputFormat by Nan Zhang · 12 years ago
  77. 0d0f899 use command-line args in genomix-driver by Jake Biesinger · 12 years ago
  78. 014dafc add graph building checking job by Nan Zhang · 12 years ago
  79. 7ac727c Merge branch 'anbangx/fullstack_genomix' into genomix/fullstack_genomix by Anbang Xu · 12 years ago
  80. 676a268 stats are binned by whole value by Jake Biesinger · 12 years ago
  81. affc0b4 toString's on edgeList and positionList are sorted by Jake Biesinger · 12 years ago
  82. 65ee367 add STATS and DUMP_FASTA steps to the graph (run locally) by Jake Biesinger · 12 years ago
  83. 9fdf74d larger chunks for hadoop graphbuilding by Jake Biesinger · 12 years ago
  84. 5be5c46 fix coresPerMachine's default values by Jake Biesinger · 12 years ago
  85. 8c187a6 add RandonWalk test case by Anbang Xu · 12 years ago
  86. 88e9442 RemoveTip pass test by Anbang Xu · 12 years ago
  87. e71a964 Unroll Repeat pass test by Anbang Xu · 12 years ago
  88. 28cbeae save intermediate results by default (found a bug in pregelix-core?) by Jake Biesinger · 12 years ago
  89. 8b79c57 don't save intermediate results by default; add option to do so by Jake Biesinger · 12 years ago
  90. 67688c3 remove the genomix-pregelix testcase config files (again) by Jake Biesinger · 12 years ago
  91. f9e6e5f add hadoop building to the driver by Jake Biesinger · 12 years ago
  92. 17b99f2 add stop haltNode in pathmerge and fix the bug Jake mentioned by Anbang Xu · 12 years ago
  93. 39cfc58 add synthetic test case by Jake Biesinger · 12 years ago
  94. 9dec13e remove generated genomix-pregel test case xml files by Jake Biesinger · 12 years ago
  95. c2aa582 Merge branch 'anbangx/backupMergingWithMaster' into genomix/fullstack_genomix by Jake Biesinger · 12 years ago
  96. 1e03787 Merge branch 'anbangx/backupMergingWithMaster_errorcase' into wbiesing/merge_fs_backup by Jake Biesinger · 12 years ago
  97. b19ba95 BubbleMerge pass complicated test cases by Anbang Xu · 12 years ago
  98. fc4fe25 add failing pathmerge testcase by Jake Biesinger · 12 years ago
  99. 32a956b fix one bug in path merge by Anbang Xu · 12 years ago
  100. 630586c add test case for synthetic data by Jake Biesinger · 12 years ago