Gitiles
Code Review
Sign In
asterix-gerrit.ics.uci.edu
/
hyracks
/
9de0ad3e4688885dd7710c8e74567d18b5e3d7c7
/
genomix
/
genomix-pregelix
/
src
/
test
/
resources
d5f760c
add p2 graph input format, initiate prependMergeNode and appendMergeNode
by Anbang Xu
· 12 years ago
01c5e31
add subclass V to extend VertexValueWritable
by Anbang Xu
· 12 years ago
7a47e8b
Begin to debug P2
by Anbang Xu
· 12 years ago
52a279f
Aggregator passes test
by Anbang Xu
· 12 years ago
67688c3
remove the genomix-pregelix testcase config files (again)
by Jake Biesinger
· 12 years ago
17b99f2
add stop haltNode in pathmerge and fix the bug Jake mentioned
by Anbang Xu
· 12 years ago
9dec13e
remove generated genomix-pregel test case xml files
by Jake Biesinger
· 12 years ago
c2aa582
Merge branch 'anbangx/backupMergingWithMaster' into genomix/fullstack_genomix
by Jake Biesinger
· 12 years ago
1e03787
Merge branch 'anbangx/backupMergingWithMaster_errorcase' into wbiesing/merge_fs_backup
by Jake Biesinger
· 12 years ago
b19ba95
BubbleMerge pass complicated test cases
by Anbang Xu
· 12 years ago
32a956b
fix one bug in path merge
by Anbang Xu
· 12 years ago
5747845
Pregelix JobGenerator uses proper GenomixJobConf
by Jake Biesinger
· 12 years ago
6fc84f1
Add additional merge info to pathmerge
by Anbang Xu
· 12 years ago
ced394a
Make pathmerge robost
by Anbang Xu
· 12 years ago
b37b705
Add UnRollTandemRepeat. TODO: add the corresponding MSG and update edges
by Anbang Xu
· 12 years ago
5e01f76
Adapt RemoveLowCoverageVertex to new graph structure. Finally, all the patterns are adapted to new graph
by Anbang Xu
· 12 years ago
e7856d5
Adapt ScaffoldingVertex to new graph structure
by Anbang Xu
· 12 years ago
6212780
BTS almost done and wait for EdgeListWritable[dir].getReadIds(Key key)
by Anbang Xu
· 12 years ago
0217e7e
Adapt SplitRepeatVertex to new graph structure. TODO: test AdjSplitRepeat
by Anbang Xu
· 12 years ago
977a413
Adapt BridgeAddVertex and BridgeRemoveVertex to new graph structure
by Anbang Xu
· 12 years ago
112cdf7
Adapt MapReduceVertex and P4 to new graph structure
by Anbang Xu
· 12 years ago
e7885ee
Pregel TestSuite is completed
by Anbang Xu
· 12 years ago
6f88379
save current state and prepare to clean up hadoop test result
by Anbang Xu
· 12 years ago
0d72095
Make generic message class for all patterns
by Anbang Xu
· 12 years ago
b1c9c7d
P1ForPathMergeVertex is completed, but one issue about even length and message from both size can't be solve
by Anbang Xu
· 12 years ago
bb8e581
Complete NaiveBFSTraverse and make more test cases
by Anbang Xu
· 12 years ago
361916b
save current state
by Anbang Xu
· 12 years ago
52bda5c
add new graph result to PathMergeTestSet
by Anbang Xu
· 12 years ago
580f6cd
add vertex.activate() to notice update and change DirectionFlag to 2 bits
by Anbang Xu
· 12 years ago
ac6b1a6
RemoveBridge pass test and add RemoveLowCoverage and Scaffolding
by Anbang Xu
· 12 years ago
61bfb93
add computeSimilarity and mergeAverageCoverage to MergeBubbleVertex
by Anbang Xu
· 12 years ago
6ee7bdf
fix HashSet in SplitRepeat
by Anbang Xu
· 12 years ago
9db1ea8
merge MapReduceVertex to p2 and p2 is completed
by Anbang Xu
· 12 years ago
29ebdc8
Map/Reduce version in pregel is completed
by Anbang Xu
· 12 years ago
1307443
P2 pass test1,2,3,4
by Anbang Xu
· 12 years ago
a5e97c7
p4 pass test
by Anbang Xu
· 12 years ago
4416d3c
debugging p4
by Anbang Xu
· 12 years ago
c71a2d3
removeBridge pass tests
by Anbang Xu
· 12 years ago
Alpha
Alpha-Graph-v2.0
b1ccba9
p4 pass test
by Anbang Xu
· 12 years ago
b3c4a2b
removeTip pass all the tests
by Anbang Xu
· 12 years ago
f947fb8
add test suite case for removetip/removebridge/pathmerge
by Anbang Xu
· 12 years ago
e6d7e7a
code review with Jake
by AnbangX
· 12 years ago
7984e2b
p3 path merge pass test
by AnbangX
· 12 years ago
46fc86e
add test cases for removeBridge, removeTip and mergeBubble
by AnbangX
· 12 years ago
cc77cf7
add test cases for path merge and other data clean patterns
by AnbangX
· 12 years ago
f60ef35
add test for graph build
by AnbangX
· 12 years ago
4b84334
format the code
by AnbangX
· 12 years ago
eae1289
add testcase
by AnbangX
· 12 years ago
950d05e
add more testcase
by AnbangX
· 12 years ago
02b2df5
add testcase
by AnbangX
· 12 years ago
f11a472
add two step of log algorithm version
by AnbangX
· 12 years ago
70812cd
fix some bugs of log algorithm and prepare to verify the correctness in big data
by AnbangX
· 12 years ago
c07e482
delete unuse function
by anbangx
· 12 years ago
f5ff29d
change folder name to edu.uci.ics.genomix.pregelix
by anbangx
· 12 years ago
aa919f9
add topology.xml
by anbangx
· 12 years ago
dd49ed0
delete old file
by anbangx
· 12 years ago
b82f054
Update
by anbangx
· 12 years ago
648cedf
Update LogAlgorithm for merging graph
by anbangx
· 12 years ago
f61ba4c
Update genomix-pregelix
by anbangx
· 12 years ago