Log - 9ac0dda3938429e853312cdfcfc11a906f6acf30 - hyracks

9ac0dda Modify mergeWithKmer to mergeWithNode by Anbang Xu · 12 years ago
6fc84f1 Add additional merge info to pathmerge by Anbang Xu · 12 years ago
d06c50f add testcase for pathmerge by Anbang Xu · 12 years ago
ced394a Make pathmerge robost by Anbang Xu · 12 years ago
b37b705 Add UnRollTandemRepeat. TODO: add the corresponding MSG and update edges by Anbang Xu · 12 years ago
6efa434 Completed P2 debugging by Anbang Xu · 12 years ago
a3c0538 Clean up P2 code and prepare to deep debug it by Anbang Xu · 12 years ago
feec5be Fix BubbleMerge by Anbang Xu · 12 years ago
5e01f76 Adapt RemoveLowCoverageVertex to new graph structure. Finally, all the patterns are adapted to new graph by Anbang Xu · 12 years ago
e7856d5 Adapt ScaffoldingVertex to new graph structure by Anbang Xu · 12 years ago
6212780 BTS almost done and wait for EdgeListWritable[dir].getReadIds(Key key) by Anbang Xu · 12 years ago
0217e7e Adapt SplitRepeatVertex to new graph structure. TODO: test AdjSplitRepeat by Anbang Xu · 12 years ago
37a8489 Adapt MergeBubbleVertex to new graph structure. TODO: check if bubble flip and merge all metadata except kmer by Anbang Xu · 12 years ago
977a413 Adapt BridgeAddVertex and BridgeRemoveVertex to new graph structure by Anbang Xu · 12 years ago
4370b2b adapt TipAddVertex and TipRemoveVertex to new graph structure by Anbang Xu · 12 years ago
112cdf7 Adapt MapReduceVertex and P4 to new graph structure by Anbang Xu · 12 years ago
e7885ee Pregel TestSuite is completed by Anbang Xu · 12 years ago
0e037c1 Prepare to clean up pregel testSuite by Anbang Xu · 12 years ago
6f88379 save current state and prepare to clean up hadoop test result by Anbang Xu · 12 years ago
0d72095 Make generic message class for all patterns by Anbang Xu · 12 years ago
b1c9c7d P1ForPathMergeVertex is completed, but one issue about even length and message from both size can't be solve by Anbang Xu · 12 years ago
bb8e581 Complete NaiveBFSTraverse and make more test cases by Anbang Xu · 12 years ago
361916b save current state by Anbang Xu · 12 years ago
52bda5c add new graph result to PathMergeTestSet by Anbang Xu · 12 years ago
580f6cd add vertex.activate() to notice update and change DirectionFlag to 2 bits by Anbang Xu · 12 years ago
05fc10d clean pregel package for latest master by Anbang Xu · 12 years ago
ac6b1a6 RemoveBridge pass test and add RemoveLowCoverage and Scaffolding by Anbang Xu · 12 years ago
4a5ee49 Hadoop TestSuite is completed and P2 pass test by Anbang Xu · 12 years ago
18c032a make TestSuite for graph building(hadoop) by Anbang Xu · 12 years ago
61bfb93 add computeSimilarity and mergeAverageCoverage to MergeBubbleVertex by Anbang Xu · 12 years ago
cb4391e clean pregel package for build by Anbang Xu · 12 years ago
c4961c9 complete MergeBubbleVertex & wait for compute fracSimilarity by Anbang Xu · 12 years ago
3986b17 debugging BubbleMergeVertex by Anbang Xu · 12 years ago
6ad60bf fix bug in readFields of KmerListWritable by Anbang Xu · 12 years ago
ad800e8 more cleanup of setByRead interface by Jake Biesinger · 12 years ago genomix/before-nodeid-graph-cleanup-Aug2013
ac6a090 Fix BubbleAddVertex and pass test by Anbang Xu · 12 years ago
6d8afff fix RemoveBridgeVertex and update for merge by Anbang Xu · 12 years ago
ec095b2 RemoveTipVertex pass test by Anbang Xu · 12 years ago
95c432c BridgeAddVertex pass test by Anbang Xu · 12 years ago
d1075a0 adapt TipAddVertex to new graph construction by Anbang Xu · 12 years ago
aac7732 SimpleSplitRepeat is completed. An issue in graph building(hadoop): KmerList.appendList() doesn't check existed element by Anbang Xu · 12 years ago
6ee7bdf fix HashSet in SplitRepeat by Anbang Xu · 12 years ago
0049eac refactor 'NaiveAlgorithm' to 'P1' and add test case for SplitRepeat by Anbang Xu · 12 years ago
5412086 refactor LogAlgorithm to P2 by Anbang Xu · 12 years ago
9db1ea8 merge MapReduceVertex to p2 and p2 is completed by Anbang Xu · 12 years ago
29ebdc8 Map/Reduce version in pregel is completed by Anbang Xu · 12 years ago
5dfa7b6 add MapReduceVertex for mapper/reducer in pregel by Anbang Xu · 12 years ago
b8e0097 p2 pass test9 by Anbang Xu · 12 years ago
9e00650 p2 pass all the tests except 9 by Anbang Xu · 12 years ago
2990977 debugging p2 by Anbang Xu · 12 years ago
1307443 P2 pass test1,2,3,4 by Anbang Xu · 12 years ago
d253d8f fix mergeWithRFKmer by Anbang Xu · 12 years ago
a5e97c7 p4 pass test by Anbang Xu · 12 years ago
4416d3c debugging p4 by Anbang Xu · 12 years ago
970c74f move old key/value class to oldtype folder by Anbang Xu · 12 years ago
c71a2d3 removeBridge pass tests by Anbang Xu · 12 years ago Alpha Alpha-Graph-v2.0
b1ccba9 p4 pass test by Anbang Xu · 12 years ago
b3c4a2b removeTip pass all the tests by Anbang Xu · 12 years ago
9378de1 change directionFlag back by Anbang Xu · 12 years ago
f947fb8 add test suite case for removetip/removebridge/pathmerge by Anbang Xu · 12 years ago
da3b802 Apply undirected graph algorithm in p2 by AnbangX · 12 years ago
93e9c22 debugging p4 and fix random seed issue by AnbangX · 12 years ago
e6d7e7a code review with Jake by AnbangX · 12 years ago
2a9137c finish p4 by AnbangX · 12 years ago
7984e2b p3 path merge pass test by AnbangX · 12 years ago
46fc86e add test cases for removeBridge, removeTip and mergeBubble by AnbangX · 12 years ago
cc77cf7 add test cases for path merge and other data clean patterns by AnbangX · 12 years ago
f60ef35 add test for graph build by AnbangX · 12 years ago
0ae1c4c add data clean by AnbangX · 12 years ago
631482f add first small test case by AnbangX · 12 years ago
f5d6db9 change all input and output format to new version by AnbangX · 12 years ago
b19726a change code format in p3 by AnbangX · 12 years ago genomix/pre-velvet-graph
5af9dff finish debug in p3 by AnbangX · 12 years ago
e04250d add p3 by AnbangX · 12 years ago
e406bf5 add hyrack format by AnbangX · 12 years ago
4b6126b use byte to check isCycle by AnbangX · 12 years ago
685b3cd add the iteraion option by AnbangX · 12 years ago
cbdb971 delete extra class by AnbangX · 12 years ago
4b84334 format the code by AnbangX · 12 years ago
1d841e8 add debug code by AnbangX · 12 years ago
61955b4 add log to debug by AnbangX · 12 years ago
df7c076 add filter path class by AnbangX · 12 years ago
cfc37ee update new code and test in ipubmed by AnbangX · 12 years ago
1669862 add test to filter specific path by AnbangX · 12 years ago
03eeda0 uniform the output format by AnbangX · 12 years ago
eae1289 add testcase by AnbangX · 12 years ago
ef51a0a reset maxIteration by AnbangX · 12 years ago
950d05e add more testcase by AnbangX · 12 years ago
02b2df5 add testcase by AnbangX · 12 years ago
a241656 add test utility by AnbangX · 12 years ago
92fc6a6 add path merge test case by AnbangX · 12 years ago
d9c2637 reduce some duplicate message communication and change int to byte by AnbangX · 12 years ago
f11a472 add two step of log algorithm version by AnbangX · 12 years ago
200fa1f use set state=DELETE instead of deleteVertexId() because deleteVertexId() causes exception by AnbangX · 12 years ago
7f09f7e change code architect and use VKmerBytesWritable instead of byte[] by AnbangX · 12 years ago
70812cd fix some bugs of log algorithm and prepare to verify the correctness in big data by AnbangX · 12 years ago
f01816c fix some bugs of log algorithm by AnbangX · 12 years ago
3c5bd0a make genomix compile with merged hyracks by buyingyi · 12 years ago
c07e482 delete unuse function by anbangx · 12 years ago
235b476 change some code to rugular output format by anbangx · 12 years ago