1. 98edaf9 add sinlgelongread test set by Nan Zhang · 12 years ago
  2. b4a494e frameSize pressure test coding complete by Nan Zhang · 12 years ago
  3. b38f2fb add getclassloader() log for hyracks' driver by Nan Zhang · 12 years ago
  4. b01f8e8 change the stat package name in graph building of hyracks by Nan Zhang · 12 years ago
  5. 2e63796 add graphviz mac version for graph building of hyracks by Nan Zhang · 12 years ago
  6. 495440b add frame size pressure test package in driver by Nan Zhang · 12 years ago
  7. 4c5d5ba add logging.properties and fix compatibility issue with old bash versions by Nan Zhang · 12 years ago
  8. d429aee revert to previous initVertex behavior by Jake Biesinger · 12 years ago
  9. 3274eac try to have 2 local stes of CCs and NCs (-runLocal not working) by Jake Biesinger · 12 years ago
  10. d688f36 don't use a max number of readids on edges by Jake Biesinger · 12 years ago
  11. 9e32331 Add full-pipeline counters by Jake Biesinger · 12 years ago
  12. da9eeaf hadoop uses |IO_DIRS| * #slaves reducers by Jake Biesinger · 12 years ago
  13. a9f475d use $IO_DIRS, not -coresPerMachine for hyracks partitions + hadoop #reducers by Jake Biesinger · 12 years ago
  14. 6dfc4bb Hadoop graphbuild works! by Jake Biesinger · 12 years ago
  15. b0aed82 hadoop dist cache must be an absolute path by Jake Biesinger · 12 years ago
  16. 7294ef7 hadoop jar deployment fix by Jake Biesinger · 12 years ago
  17. d21026a shut down previous clusters again by Jake Biesinger · 12 years ago
  18. 2a30771 don't delete the default log directory on cluster shutdown by Jake Biesinger · 12 years ago
  19. 6f98c6f read additional ports from .properties; launch multiple CC's on one machine(?) by Jake Biesinger · 12 years ago
  20. f173509 tweak cluster shutdown by Jake Biesinger · 12 years ago
  21. a56a98a read FRAME_SIZE and FRAME_LIMIT from cluster.properties by Jake Biesinger · 12 years ago
  22. 7f546b5 Use maven-built app.home when run from Eclipse (mus trun mvn package once) by Jake Biesinger · 12 years ago
  23. bb0540c fix shutdown bug when -runLocal=false by Jake Biesinger · 12 years ago
  24. 3255cb1 move scripts back (can't run non-local eclipse without mvn package) by Jake Biesinger · 12 years ago
  25. 3fb78eb move and chmod +x scripts in driver so eclipse can call the directly by Jake Biesinger · 12 years ago
  26. 2d358c6 runLocal is working but doesn't shut down properly by Jake Biesinger · 12 years ago
  27. db95a42 only shut down pregelix cluster if it's running by Jake Biesinger · 12 years ago
  28. 0734cd2 STATS is a separate option and DUMP_FASTA can happen after any step by Jake Biesinger · 12 years ago
  29. 16a94ca WIP: partial support for local/nonlocal for hadoop, hyracks and pregelix by Jake Biesinger · 12 years ago
  30. b8ec304 fix framesize: 256MB buffer, 64k page by Jake Biesinger · 12 years ago
  31. eb807a3 add scratch dir creator script in driver by Jake Biesinger · 12 years ago
  32. f3e0fc6 only set kmerLength during first superstep in basicGraphCleanVertex by Jake Biesinger · 12 years ago
  33. ee82213 increase default job history for adminconsole by Jake Biesinger · 12 years ago
  34. 76e2d7f don't read global state during compute iterations by Jake Biesinger · 12 years ago
  35. ed5a065 less aggressive and adjustable cluster wait times by Jake Biesinger · 12 years ago
  36. f389e7e tweak framesize by Jake Biesinger · 12 years ago
  37. eecb337 increase wait time and add a shutdown hook that stops the clusters by Jake Biesinger · 12 years ago
  38. 2d72d3e add -followsGraphBuild for those inputs proceeding build by Jake Biesinger · 12 years ago
  39. 8f6b461 refactor pregelix job creation by Anbang Xu · 12 years ago
  40. 33d8284 fix driverUtils string value by Anbang Xu · 12 years ago
  41. a32d7ce adjust job history size by Nan Zhang · 12 years ago
  42. 56af037 remove framesize from command-line parameters by Jake Biesinger · 12 years ago
  43. 6c4e526 read and set framesize from cluster.properties by Jake Biesinger · 12 years ago
  44. b6ca725 add the option of frame size by Nan Zhang · 12 years ago
  45. 5cda522 format test case by Anbang Xu · 12 years ago
  46. 2246913 Small change by Anbang Xu · 12 years ago
  47. a90fdd9 update pregelix vertexes to initialize static values by Jake Biesinger · 12 years ago
  48. 15b6f47 add MAX_READ_IDS_PER_EDGE in opts parser and jobs by Jake Biesinger · 12 years ago
  49. d169c54 auto-discover CC port and IP settings (broke runLocal) by Jake Biesinger · 12 years ago
  50. 843db89 Don't use infiniband ports (look into in the future) by Jake Biesinger · 12 years ago
  51. 21bb3d6 don't reuse Hyracks CC in Pregelix jobs by Jake Biesinger · 12 years ago
  52. 4aa155f increase wait time and defer creating the driver until NCs are active by Jake Biesinger · 12 years ago
  53. 284e5f1 use .pid files to track the CC and NC nodes by Jake Biesinger · 12 years ago
  54. 3bb11f5 move start/stop cluster in utils by Jake Biesinger · 12 years ago
  55. aae579a use app.home to get .properties files by Jake Biesinger · 12 years ago
  56. f18eed5 Add some logging and attempt to shut down servers on exception by Jake Biesinger · 12 years ago
  57. 5936fcb fix NPE by Jake Biesinger · 12 years ago
  58. ddeb021 Split driver utilities into their own file by Jake Biesinger · 12 years ago
  59. e643029 genomix driver is responsible for start/stop of Hyracks/Pregelix clusters by Jake Biesinger · 12 years ago
  60. dc32cf2 separate NC's for pregelix and hyracks by Jake Biesinger · 12 years ago
  61. 11823d7 simpler commands for script GENOMIX_HOME resolution by Jake Biesinger · 12 years ago
  62. d4b581c Run cluster and driver scripts from anywhere by Jake Biesinger · 12 years ago
  63. 4aaa309 Merge branch 'genomix/experiment_master_genomix' into genomix/fullstack_genomix by Nan Zhang · 12 years ago
  64. b89c7c5 Merge branch 'anbangx/fullstack_genomix' into genomix/fullstack_genomix by Anbang Xu · 12 years ago
  65. a1b1e45 add simple command to each pattern by Anbang Xu · 12 years ago
  66. 86edb32 change command for scaffolding by Anbang Xu · 12 years ago
  67. 423fd16 Fix all synchronization issues by Anbang Xu · 12 years ago
  68. 81833a0 add scaffoldingAggregator by Anbang Xu · 12 years ago
  69. ee7dac3 Add synchronization to static variable by Anbang Xu · 12 years ago
  70. 6a6ff67 modify the option of NlinesPerMap to false by Nan Zhang · 12 years ago
  71. cf91139 remove incorrect expected file by Nan Zhang · 12 years ago
  72. b9707dd Merge branch 'master' into genomix/experiment_master_genomix by Nan Zhang · 12 years ago
  73. 73793d5 small change for rebase by Nan Zhang · 12 years ago
  74. 558ea60 Merge aggregator with main branch by Anbang Xu · 12 years ago
  75. 50b28b6 Adpat hadoop testsuite to have linespermap arg by Anbang Xu · 12 years ago
  76. 806ff79 add linesPerMap parameter to hadoop graph building driver by Anbang Xu · 12 years ago
  77. 4da15b2 add many similar bubbles in one pattern test case and BubbleMerge pass test by Anbang Xu · 12 years ago
  78. a9c60b3 The aggregator for all the patterns are completed by Anbang Xu · 12 years ago
  79. 1aed014 add statistics counters to removeTip, pathMerge, removeBridge by Anbang Xu · 12 years ago
  80. 4e63417 fix location of stores.properties by Jake Biesinger · 12 years ago
  81. dd63616 add stores.properties (deleted by?) by Jake Biesinger · 12 years ago
  82. 476760d Add timed logging to genomix-driver jobs by Jake Biesinger · 12 years ago
  83. 7f2208f PathMerge aggregator is completed by Anbang Xu · 12 years ago
  84. 52a279f Aggregator passes test by Anbang Xu · 12 years ago
  85. b1c7809 testing by Anbang Xu · 12 years ago
  86. f3a548c move aggregator output to test by Anbang Xu · 12 years ago
  87. daa7780 fix NLineInputFormat for real by Jake Biesinger · 12 years ago
  88. 6ec5f66 don't use NLineInputFormat for now by Jake Biesinger · 12 years ago
  89. ca28b1b add StatisticsCounterAggregator by Anbang Xu · 12 years ago
  90. 270d47a add NlineInputFormat by Nan Zhang · 12 years ago
  91. 0d0f899 use command-line args in genomix-driver by Jake Biesinger · 12 years ago
  92. 7ec10c1 Removed uneeded check. by salsubaiee · 12 years ago
  93. 014dafc add graph building checking job by Nan Zhang · 12 years ago
  94. 7ac727c Merge branch 'anbangx/fullstack_genomix' into genomix/fullstack_genomix by Anbang Xu · 12 years ago
  95. 14c34b0 change a method name and added comments. by salsubaiee · 12 years ago
  96. 676a268 stats are binned by whole value by Jake Biesinger · 12 years ago
  97. affc0b4 toString's on edgeList and positionList are sorted by Jake Biesinger · 12 years ago
  98. 65ee367 add STATS and DUMP_FASTA steps to the graph (run locally) by Jake Biesinger · 12 years ago
  99. 9fdf74d larger chunks for hadoop graphbuilding by Jake Biesinger · 12 years ago
  100. 5be5c46 fix coresPerMachine's default values by Jake Biesinger · 12 years ago