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asterix-gerrit.ics.uci.edu / hyracks / 8edaabdced65d46b8c041138b2fe14a2ffd11f9a / genomix / genomix-pregelix / src / main / java
  1. 3e3144b cleanning continue by Nan Zhang · 12 years ago
  2. 8e8e99f Merge branch 'nanzhang/hyracks_genomix' into genomix/fullstack_genomix by Nan Zhang · 12 years ago
  3. 6ad60bf fix bug in readFields of KmerListWritable by Anbang Xu · 12 years ago
  4. 6981f1c adapt graph construction(hadoop) to VKmer by Anbang Xu · 12 years ago
  5. ad800e8 more cleanup of setByRead interface by Jake Biesinger · 12 years ago genomix/before-nodeid-graph-cleanup-Aug2013
  6. b8626fd make GraphViz for test by Anbang Xu · 12 years ago
  7. 79c5ccf Merge branch 'wbiesing/genomix/VKmers' into genomix/fullstack_genomix by Jake Biesinger · 12 years ago
  8. 9f949c4 MergeBubbleVertex half done by Anbang Xu · 12 years ago
  9. 39f1cf1 Merge commit '07acebba2c4470834919a82092faec0c982411e5' into nanzhang/hyracks_genomix by Nan Zhang · 12 years ago
  10. 07acebb Merge MergeBubbleMessageWritable to MessageWritable by Anbang Xu · 12 years ago
  11. ac6a090 Fix BubbleAddVertex and pass test by Anbang Xu · 12 years ago
  12. 6d8afff fix RemoveBridgeVertex and update for merge by Anbang Xu · 12 years ago
  13. ec095b2 RemoveTipVertex pass test by Anbang Xu · 12 years ago
  14. 95c432c BridgeAddVertex pass test by Anbang Xu · 12 years ago
  15. 6f81b59 small update by Anbang Xu · 12 years ago
  16. 714d906 adapt BridgeAddVertex to new graph construction by Anbang Xu · 12 years ago
  17. d1075a0 adapt TipAddVertex to new graph construction by Anbang Xu · 12 years ago
  18. aac7732 SimpleSplitRepeat is completed. An issue in graph building(hadoop): KmerList.appendList() doesn't check existed element by Anbang Xu · 12 years ago
  19. 0b9da1e Merge branch 'wbiesing/genomix/VKmers' into nanzhang/hyracks_genomix by Nan Zhang · 12 years ago
  20. c68e510 finish the debugging by Nan Zhang · 12 years ago
  21. 1259632 refactor KmerList -> VKmerList by Jake Biesinger · 12 years ago
  22. 34d3d73 there is an issue in KmerListWritable and try to fix it by Anbang Xu · 12 years ago
  23. 5eaa799 Merge commit '94e075b5c3db9aa613ef61c2581430a143b17bc8' into nanzhang/hyracks_genomix by Nan Zhang · 12 years ago
  24. ceab4c1 Merge branch 'wbiesing/genomix/VKmers' into nanzhang/hyracks_genomix by Nan Zhang · 12 years ago
  25. 94e075b update for merge by Anbang Xu · 12 years ago
  26. 6ee7bdf fix HashSet in SplitRepeat by Anbang Xu · 12 years ago
  27. 0049eac refactor 'NaiveAlgorithm' to 'P1' and add test case for SplitRepeat by Anbang Xu · 12 years ago
  28. d57d7e5 add CreatedVertex and ConnectedTable by Anbang Xu · 12 years ago
  29. 37c6933 start coding SplitRepeat by Anbang Xu · 12 years ago
  30. 5412086 refactor LogAlgorithm to P2 by Anbang Xu · 12 years ago
  31. 9db1ea8 merge MapReduceVertex to p2 and p2 is completed by Anbang Xu · 12 years ago
  32. d94f5f9 refactor 'BasicPathMergeVertex' to 'BasicGraphCleanVertex', make it more general by Anbang Xu · 12 years ago
  33. 29ebdc8 Map/Reduce version in pregel is completed by Anbang Xu · 12 years ago
  34. 0f06660 start dependency refactor by Jake Biesinger · 12 years ago
  35. 5dfa7b6 add MapReduceVertex for mapper/reducer in pregel by Anbang Xu · 12 years ago
  36. d6276e7 p2 pass test by Anbang Xu · 12 years ago
  37. a9e482e update KmerListWritable to use fixed-length kmers by Jake Biesinger · 12 years ago
  38. b8e0097 p2 pass test9 by Anbang Xu · 12 years ago
  39. 9e00650 p2 pass all the tests except 9 by Anbang Xu · 12 years ago
  40. 2990977 debugging p2 by Anbang Xu · 12 years ago
  41. b811143 Refactor KmerBytesWritable to use internal length by Jake Biesinger · 12 years ago
  42. 1307443 P2 pass test1,2,3,4 by Anbang Xu · 12 years ago
  43. d253d8f fix mergeWithRFKmer by Anbang Xu · 12 years ago
  44. a5e97c7 p4 pass test by Anbang Xu · 12 years ago
  45. 4416d3c debugging p4 by Anbang Xu · 12 years ago
  46. 311001a start to change graph clean part to 'contrail-graph' structure by Anbang Xu · 12 years ago
  47. 4e9262f add GenomixMapper for new graph - 'contrail' by Anbang Xu · 12 years ago
  48. 8dbe728 refactor 'size' to 'kmerByteSize' in KmerBytesWritable by Anbang Xu · 12 years ago
  49. 970c74f move old key/value class to oldtype folder by Anbang Xu · 12 years ago
  50. c71a2d3 removeBridge pass tests by Anbang Xu · 12 years ago Alpha Alpha-Graph-v2.0
  51. b1ccba9 p4 pass test by Anbang Xu · 12 years ago
  52. b3c4a2b removeTip pass all the tests by Anbang Xu · 12 years ago
  53. 9378de1 change directionFlag back by Anbang Xu · 12 years ago
  54. 3054c15 clear the code and fix messageFlag by Anbang Xu · 12 years ago
  55. f947fb8 add test suite case for removetip/removebridge/pathmerge by Anbang Xu · 12 years ago
  56. da3b802 Apply undirected graph algorithm in p2 by AnbangX · 12 years ago
  57. 93e9c22 debugging p4 and fix random seed issue by AnbangX · 12 years ago
  58. e6d7e7a code review with Jake by AnbangX · 12 years ago
  59. 3819c94 add stop condition for p2 by AnbangX · 12 years ago
  60. 74c645c send msg to bidirection in p2 by AnbangX · 12 years ago
  61. e1dbea7 add subclass BasicVertex and fixing p2 by AnbangX · 12 years ago
  62. d2e7e86 fix path merge flaws by AnbangX · 12 years ago genomix/one_direction v2.0
  63. 2a9137c finish p4 by AnbangX · 12 years ago
  64. b7b66eb correct p4 by AnbangX · 12 years ago
  65. 730ed8a some updates by AnbangX · 12 years ago
  66. 342d65b add p4 for path merge by AnbangX · 12 years ago
  67. 7984e2b p3 path merge pass test by AnbangX · 12 years ago
  68. 46fc86e add test cases for removeBridge, removeTip and mergeBubble by AnbangX · 12 years ago
  69. cc77cf7 add test cases for path merge and other data clean patterns by AnbangX · 12 years ago
  70. 0d3ec57 update data clean 2013-06-06 by AnbangX · 12 years ago
  71. fd8c69a update 2013-6-4 by Anbang Xu · 12 years ago
  72. 0ae1c4c add data clean by AnbangX · 12 years ago
  73. 631482f add first small test case by AnbangX · 12 years ago
  74. 30f28d0 new code for bi-direction graph build by AnbangX · 12 years ago
  75. f5d6db9 change all input and output format to new version by AnbangX · 12 years ago
  76. a6e78ab do some changes to test git rebase by AnbangX · 12 years ago
  77. b19726a change code format in p3 by AnbangX · 12 years ago genomix/pre-velvet-graph
  78. 5af9dff finish debug in p3 by AnbangX · 12 years ago
  79. e04250d add p3 by AnbangX · 12 years ago
  80. e406bf5 add hyrack format by AnbangX · 12 years ago
  81. dff6815 add kmer factory by AnbangX · 12 years ago
  82. fb0c262 add global variable by AnbangX · 12 years ago
  83. 4b6126b use byte to check isCycle by AnbangX · 12 years ago
  84. 685b3cd add the iteraion option by AnbangX · 12 years ago
  85. cbdb971 delete extra class by AnbangX · 12 years ago
  86. 4b84334 format the code by AnbangX · 12 years ago
  87. 9a6b70b add incomingMsg and outgoingMsg and do some optimization after code review by AnbangX · 12 years ago
  88. 29973b0 add one condition by AnbangX · 12 years ago vault/fullstack_genomix
  89. 48f3635 delete some log by AnbangX · 12 years ago
  90. e4d4c6e add more log by AnbangX · 12 years ago
  91. 1d841e8 add debug code by AnbangX · 12 years ago
  92. 61955b4 add log to debug by AnbangX · 12 years ago
  93. 326f573 change outputformat for test by AnbangX · 12 years ago
  94. df7c076 add filter path class by AnbangX · 12 years ago
  95. cfc37ee update new code and test in ipubmed by AnbangX · 12 years ago
  96. 1669862 add test to filter specific path by AnbangX · 12 years ago
  97. 03eeda0 uniform the output format by AnbangX · 12 years ago
  98. eae1289 add testcase by AnbangX · 12 years ago
  99. ef51a0a reset maxIteration by AnbangX · 12 years ago
  100. 950d05e add more testcase by AnbangX · 12 years ago