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asterix-gerrit.ics.uci.edu / hyracks / 8ba5da2e96c4e0bc4a7d6c03f83e5f165604465d
  1. 8ba5da2 fix NPE for debugKmers by Jake Biesinger · 12 years ago
  2. 09036bb add cmdline option to specify kmers to log by Jake Biesinger · 12 years ago
  3. d0ae604 fix hyracks graphbuilding to match new interface (pass in normalizer) by Jake Biesinger · 12 years ago
  4. a3ec17d Merge branch 'genomix/fullstack_genomix' into wbiesing/refactor_p4 by Jake Biesinger · 12 years ago
  5. bc43d87 Merge branch 'yingyi/fullstack_fix' into wbiesing/refactor_p4 by Jake Biesinger · 12 years ago
  6. 81e67dc Remove jar deploy messages from hyracks driver by Jake Biesinger · 12 years ago
  7. 3e02877 refactor names in getKmerNeighbors.py by Jake Biesinger · 12 years ago
  8. 807b452 Add more restriction for chooseMergedir by Anbang Xu · 12 years ago
  9. b7bf37c Change driver to run P1 by Anbang Xu · 12 years ago
  10. 59ee6a1 Prepare to run P1 by Anbang Xu · 12 years ago
  11. fd9229e Clean up code and move to cluster to test P0 by Anbang Xu · 12 years ago
  12. 82a9005 P0(refactor version of P1) pass all small testcases by Anbang Xu · 12 years ago
  13. e5ddfc4 Sender msg edgetype need to fix by Anbang Xu · 12 years ago
  14. 671cf67 Simply P1 and add throw Exception to it by Anbang Xu · 12 years ago
  15. 8009477 Refactor P1 by Anbang Xu · 12 years ago
  16. 0a04676 use a list of kmers for verbose mode by Jake Biesinger · 12 years ago
  17. b633dc3 Merge with main branch after some refactor by Anbang Xu · 12 years ago
  18. 65a8336 Keep old version of ComplexBubbleMerge by Anbang Xu · 12 years ago
  19. b6a3caff Refactoring BubbleMerge by Anbang Xu · 12 years ago
  20. d47cd28 add 10 test cases for edgelistWritable by Nan Zhang · 12 years ago
  21. 52cb426 small tweaks for Edge Test by Nan Zhang · 12 years ago
  22. a128e4b Simplify the main compute function of removetip and removelowcoverage by Anbang Xu · 12 years ago
  23. 1c73130 Refactor removeLowCoverage by Anbang Xu · 12 years ago
  24. 4f0f3b5 fix raw binary comparator by buyingyi · 12 years ago
  25. 9908512 Refactor tipremove by Anbang Xu · 12 years ago
  26. cda3a02 fix raw normalized key computer by buyingyi · 12 years ago
  27. cefced5 use raw binary comparator internally for pregelix by buyingyi · 12 years ago
  28. 14f3c71 Add DIR.edgeType() to covert dir to edgeTypew by Anbang Xu · 12 years ago
  29. f91c5bb Refactor broadcaseMerge to sendMergeMsg by Anbang Xu · 12 years ago
  30. cb7ebcd Finish integration by Anbang Xu · 12 years ago
  31. 0958af1 Pass tests by Anbang Xu · 12 years ago
  32. 88e742e Fix other pattherns by Anbang Xu · 12 years ago
  33. 205471f Apply EDGETYPE to P4 by Anbang Xu · 12 years ago
  34. f7d0baf Add enum EDGETYPE by Anbang Xu · 12 years ago
  35. 63f0132 add genomix root logger, turn off some other logging by Jake Biesinger · 12 years ago
  36. 9e4aeab Merge remote-tracking branch 'origin' into yingyi/fullstack_fix by buyingyi · 12 years ago
  37. 59d4e88 revise benchmark input/output format by buyingyi · 12 years ago
  38. ada697a add option for verbose and log (one of) the problem kmer(s) by Jake Biesinger · 12 years ago
  39. f709d73 Merge with Jake's refactor branch by Anbang Xu · 12 years ago
  40. af493b5 Prepare to integrate by Anbang Xu · 12 years ago genomix/anbangx/before-pathmerge-refactor genomix/old-code v1.4
  41. 72db6e0 Code review on genomix-data -- 2013.9.20 by Anbang Xu · 12 years ago
  42. 71ddf5f BUGFIX: EdgeListWritable makes a deep copy by Jake Biesinger · 12 years ago
  43. a100ad9 BUGFIX: make a deep copy in EdgeListWritable by Jake Biesinger · 12 years ago
  44. ba2b0a7 only check for tandem repeats at start and after merge (not after updates) by Jake Biesinger · 12 years ago
  45. a4a5ae9 more consistent voteToHalt/activate in P4 by Jake Biesinger · 12 years ago
  46. 4494560 code review on P4 refactor by Jake Biesinger · 12 years ago
  47. f54b5e9 Fix syntax errors in P1 (probably still broken though) by Jake Biesinger · 12 years ago
  48. 6a19516 refactor of P4 passes test cases (P1 broken) by Jake Biesinger · 12 years ago
  49. fc3ddfa more helper functions for DIR and DirectionFlag by Jake Biesinger · 12 years ago
  50. db9186e Merge updateState and sendMsg into on step by Anbang Xu · 12 years ago
  51. ec97be2 Integrate with Jake's enum mergeDir by Anbang Xu · 12 years ago
  52. bc17671 Add some function util by Anbang Xu · 12 years ago
  53. 8fa68de use getDest by Anbang Xu · 12 years ago
  54. 3b5c6bd WIP: refactor P4 (broken) by Jake Biesinger · 12 years ago
  55. a44ad6f Helper functions for DIR by Jake Biesinger · 12 years ago
  56. 6efdb29 fix logging file for pregelix test cases by Jake Biesinger · 12 years ago
  57. ff90e10 Add an iterable for Edge keys by Jake Biesinger · 12 years ago
  58. 21e8120 getDestVertexId has some issues, which may cause problem on P4 by Anbang Xu · 12 years ago
  59. ecdc0f6 Make setReplaceDir and setDeleteDir by Anbang Xu · 12 years ago
  60. e248d53 add CHECK_SYMMETRY to driver by Jake Biesinger · 12 years ago
  61. c91c084 code review on genomix-driver -- 2013.9.18 by Anbang Xu · 12 years ago
  62. 88640f6 Use mergeDir in check condition and move setMergeDir and sendUpdateMsg out of check condition by Anbang Xu · 12 years ago
  63. 3afaa26 Simply sendMergeMsg() by Anbang Xu · 12 years ago
  64. 4abf866 fixed recovery bugs by Young-Seok · 12 years ago
  65. 4da7e66 add CHECK_SYMMETRY to driver by Jake Biesinger · 12 years ago
  66. 1848aa3 Process information before sending message by Anbang Xu · 12 years ago
  67. af88e04 Aggregate all the incomingMsgs first, then make a decision based aggregateMsg by Anbang Xu · 12 years ago
  68. 9703a5c Change non-head to path by Anbang Xu · 12 years ago
  69. 1491f7f refactor to use general NEXT and PREVIOUS directions by Anbang Xu · 12 years ago
  70. a4144e7 Merge remote-tracking branch 'origin/nanzhang/genomix_hyracks' into genomix/new_merge_master by Nan Zhang · 12 years ago
  71. 5793b66 run normally after merge by Nan Zhang · 12 years ago
  72. 06e7ebb Merge branch 'master' into genomix/new_merge_master by Nan Zhang · 12 years ago
  73. fde129e update kmerNeighbors script by Jake Biesinger · 12 years ago
  74. 2876f0e Merge branch 'anbangx/code_review2' into genomix/fullstack_genomix by Anbang Xu · 12 years ago
  75. f307307 Clean up some code by Anbang Xu · 12 years ago
  76. efbeca5 Simplifying sendSettleMsgs by Anbang Xu · 12 years ago
  77. ee1e1e1 bit clean and move the member of subclass to derived class by Anbang Xu · 12 years ago
  78. 53cc7e3 Merge branch 'wbiesing/debug' into genomix/fullstack_genomix by Jake Biesinger · 12 years ago
  79. 2bdc6fb Combine setNext/PrevToMeDir to setNeighborToMeDir(boolean) and throw exception when the merge dir degree is not 1 by Anbang Xu · 12 years ago
  80. deeb3c8 REMOVE isfilp in sendMergeMsg() by Anbang Xu · 12 years ago
  81. 5dbc4e9 Call node.updateEdges directly by Anbang Xu · 12 years ago
  82. 7b773fd Change Num_TandemRepeat to Num_Cycles by Anbang Xu · 12 years ago
  83. b237604 Seperate function for each block in each iteration by Anbang Xu · 12 years ago
  84. 4273653 add ThreeNodesCycle, and it succeeds to pass test by Anbang Xu · 12 years ago
  85. 87dace3 Whenever detect the cycle, don't remove tandem repeats but DO stop merging by Anbang Xu · 12 years ago
  86. 065aaeb Clean up some feedbacks from code review by Anbang Xu · 12 years ago
  87. 05f3eff Move all the setCounter to the end of this iteration by Anbang Xu · 12 years ago
  88. 0e9ff97 Use incomingMsg as a parameter in processMerge() by Anbang Xu · 12 years ago
  89. 1b8fc71 Move the checking condition outside the loop by Anbang Xu · 12 years ago
  90. 63c251c Pass incomingMsg as parameter in processUpdate() by Anbang Xu · 12 years ago
  91. daabce7 Simplifying all the setSateAsMergeDir by Anbang Xu · 12 years ago
  92. 6d3e6da Simplifing all the sendUpdateMsg by Anbang Xu · 12 years ago
  93. 4e0d144 add structural constraints to update directions by Jake Biesinger · 12 years ago
  94. a307ce9 use setLong from cmdline by Jake Biesinger · 12 years ago
  95. 50e83b4 Combine ifFlipWithNext/Prev() to ifFlipWithNeighbor(boolean withPredecessor) and combine configureUpdateMsgFroPredecessor/Successor to sendUpdateMsg by Anbang Xu · 12 years ago
  96. aea52c1 fix P4 to use (already available) cmdline random seed by Jake Biesinger · 12 years ago
  97. 40c6d28 tweaks for edge pressure test by Nan Zhang · 12 years ago
  98. 6dbee34 debugging by Jake Biesinger · 12 years ago
  99. 1b43c6b check if degree is correct in updateEdges by Jake Biesinger · 12 years ago
  100. de16f37 add AlreadyInEdge test case by Jake Biesinger · 12 years ago