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asterix-gerrit.ics.uci.edu / hyracks / 84e385f319a10f1a442dac0c77a65a0b65c413ca / genomix / genomix-pregelix / src / main / java
  1. 4e9262f add GenomixMapper for new graph - 'contrail' by Anbang Xu · 12 years ago
  2. 8dbe728 refactor 'size' to 'kmerByteSize' in KmerBytesWritable by Anbang Xu · 12 years ago
  3. 970c74f move old key/value class to oldtype folder by Anbang Xu · 12 years ago
  4. c71a2d3 removeBridge pass tests by Anbang Xu · 12 years ago Alpha Alpha-Graph-v2.0
  5. b1ccba9 p4 pass test by Anbang Xu · 12 years ago
  6. b3c4a2b removeTip pass all the tests by Anbang Xu · 12 years ago
  7. 9378de1 change directionFlag back by Anbang Xu · 12 years ago
  8. 3054c15 clear the code and fix messageFlag by Anbang Xu · 12 years ago
  9. f947fb8 add test suite case for removetip/removebridge/pathmerge by Anbang Xu · 12 years ago
  10. da3b802 Apply undirected graph algorithm in p2 by AnbangX · 12 years ago
  11. 93e9c22 debugging p4 and fix random seed issue by AnbangX · 12 years ago
  12. e6d7e7a code review with Jake by AnbangX · 12 years ago
  13. 3819c94 add stop condition for p2 by AnbangX · 12 years ago
  14. 74c645c send msg to bidirection in p2 by AnbangX · 12 years ago
  15. e1dbea7 add subclass BasicVertex and fixing p2 by AnbangX · 12 years ago
  16. d2e7e86 fix path merge flaws by AnbangX · 12 years ago genomix/one_direction v2.0
  17. 2a9137c finish p4 by AnbangX · 12 years ago
  18. b7b66eb correct p4 by AnbangX · 12 years ago
  19. 730ed8a some updates by AnbangX · 12 years ago
  20. 342d65b add p4 for path merge by AnbangX · 12 years ago
  21. 7984e2b p3 path merge pass test by AnbangX · 12 years ago
  22. 46fc86e add test cases for removeBridge, removeTip and mergeBubble by AnbangX · 12 years ago
  23. cc77cf7 add test cases for path merge and other data clean patterns by AnbangX · 12 years ago
  24. 0d3ec57 update data clean 2013-06-06 by AnbangX · 12 years ago
  25. fd8c69a update 2013-6-4 by Anbang Xu · 12 years ago
  26. 0ae1c4c add data clean by AnbangX · 12 years ago
  27. 631482f add first small test case by AnbangX · 12 years ago
  28. 30f28d0 new code for bi-direction graph build by AnbangX · 12 years ago
  29. f5d6db9 change all input and output format to new version by AnbangX · 12 years ago
  30. a6e78ab do some changes to test git rebase by AnbangX · 12 years ago
  31. b19726a change code format in p3 by AnbangX · 12 years ago genomix/pre-velvet-graph
  32. 5af9dff finish debug in p3 by AnbangX · 12 years ago
  33. e04250d add p3 by AnbangX · 12 years ago
  34. e406bf5 add hyrack format by AnbangX · 12 years ago
  35. dff6815 add kmer factory by AnbangX · 12 years ago
  36. fb0c262 add global variable by AnbangX · 12 years ago
  37. 4b6126b use byte to check isCycle by AnbangX · 12 years ago
  38. 685b3cd add the iteraion option by AnbangX · 12 years ago
  39. cbdb971 delete extra class by AnbangX · 12 years ago
  40. 4b84334 format the code by AnbangX · 12 years ago
  41. 9a6b70b add incomingMsg and outgoingMsg and do some optimization after code review by AnbangX · 12 years ago
  42. 29973b0 add one condition by AnbangX · 12 years ago vault/fullstack_genomix
  43. 48f3635 delete some log by AnbangX · 12 years ago
  44. e4d4c6e add more log by AnbangX · 12 years ago
  45. 1d841e8 add debug code by AnbangX · 12 years ago
  46. 61955b4 add log to debug by AnbangX · 12 years ago
  47. 326f573 change outputformat for test by AnbangX · 12 years ago
  48. df7c076 add filter path class by AnbangX · 12 years ago
  49. cfc37ee update new code and test in ipubmed by AnbangX · 12 years ago
  50. 1669862 add test to filter specific path by AnbangX · 12 years ago
  51. 03eeda0 uniform the output format by AnbangX · 12 years ago
  52. eae1289 add testcase by AnbangX · 12 years ago
  53. ef51a0a reset maxIteration by AnbangX · 12 years ago
  54. 950d05e add more testcase by AnbangX · 12 years ago
  55. 02b2df5 add testcase by AnbangX · 12 years ago
  56. 92fc6a6 add path merge test case by AnbangX · 12 years ago
  57. f359983 change byte represent in all method by AnbangX · 12 years ago
  58. db5db2d use byte to represent state and messgeType by AnbangX · 12 years ago
  59. d9c2637 reduce some duplicate message communication and change int to byte by AnbangX · 12 years ago
  60. ee94af1 add iteration parameter by AnbangX · 12 years ago
  61. f11a472 add two step of log algorithm version by AnbangX · 12 years ago
  62. f60dab2 delete test code by AnbangX · 12 years ago
  63. b3ca05f delete unuse variable by AnbangX · 12 years ago
  64. de1b24d change ValueWritable.toString by AnbangX · 12 years ago
  65. b5d8e9b use deleteVertexId() instead of set state by AnbangX · 12 years ago
  66. 200fa1f use set state=DELETE instead of deleteVertexId() because deleteVertexId() causes exception by AnbangX · 12 years ago
  67. e72c849 fix the bug of naive and log algorithm by AnbangX · 12 years ago
  68. 7f09f7e change code architect and use VKmerBytesWritable instead of byte[] by AnbangX · 12 years ago
  69. 2bfbe83 add back old version of Kmer to support genomix-pregelix by JavierJia · 12 years ago
  70. d758539 the newest version of log algorthm for path merge and pass all the test cases by AnbangX · 12 years ago
  71. 70812cd fix some bugs of log algorithm and prepare to verify the correctness in big data by AnbangX · 12 years ago
  72. f01816c fix some bugs of log algorithm by AnbangX · 12 years ago
  73. 9d5de1e add num-iteration by anbangx · 12 years ago
  74. 952fac1 fix the bug of naive algorithm by anbangx · 12 years ago
  75. f27bac6 delete unuse class by anbangx · 12 years ago
  76. c07e482 delete unuse function by anbangx · 12 years ago
  77. 74b72ca change fix bytes array to flexible bytes with offset and length in KmerUtil by jianfeng.jia@gmail.com · 12 years ago
  78. 235b476 change some code to rugular output format by anbangx · 12 years ago
  79. 8f7f606 delete log by anbangx · 12 years ago
  80. cdc5917 upload the graph of the test case by anbangx · 12 years ago
  81. b7c1b11 Finish verifying the correctness of Naive Algorithm and Log Algorithm by anbangx · 12 years ago
  82. 172a7dd change code structure by anbangx · 12 years ago
  83. 8af245b change code format of LoadVertex, MessageWritable by anbangx · 12 years ago
  84. f5ff29d change folder name to edu.uci.ics.genomix.pregelix by anbangx · 12 years ago
  85. 9ce8742 change code format of naive algorithm and delete some extra test code by anbangx · 12 years ago
  86. dc6c4d6 add client/drive by anbangx · 12 years ago
  87. f5eb8b7 some modified by anbangx · 12 years ago
  88. 69e64e4 ADD generateSmallFile.java by anbangx · 12 years ago
  89. ac06a8a update by anbangx · 12 years ago
  90. b9dd63c update by anbangx · 12 years ago
  91. cf3b91e update by anbangx · 12 years ago
  92. fa8ddab add test by anbangx · 12 years ago
  93. b82f054 Update by anbangx · 12 years ago
  94. 648cedf Update LogAlgorithm for merging graph by anbangx · 12 years ago
  95. 5962a37 Update MergeGraph by anbangx · 12 years ago
  96. 7a14a81 Modify to SequenceFile by anbangx · 12 years ago
  97. f61ba4c Update genomix-pregelix by anbangx · 12 years ago
  98. e2be647 Update by anbangx · 12 years ago
  99. 8192a91 Adding a file genomix-pregelix by anbangx · 12 years ago