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asterix-gerrit.ics.uci.edu / hyracks / 83af35875bbc8c1af95ffd7175607e20f7d4fd96 / genomix
  1. 83af358 static is redundant on enums by Jake Biesinger · 12 years ago
  2. c8dc2d1 remove -port and -ipAddress in favor of reading from conf by Jake Biesinger · 12 years ago
  3. d20e770 remove extraArguments from jobConf parser by Jake Biesinger · 12 years ago
  4. 773abad remove apache commons logger in minicluster.DriverUtils by Jake Biesinger · 12 years ago
  5. 9034bec remove TEXT output for HyracksDriver by Jake Biesinger · 12 years ago
  6. 2279e99 remove kmerSize from GenomixReducer by Jake Biesinger · 12 years ago
  7. ac60f5b plot histograms of all statistics (in bubble gum red...) by Jake Biesinger · 12 years ago
  8. 6b5467c Never hard coding... Move into one loop by Anbang Xu · 12 years ago
  9. daaaade Merge with code review by Anbang Xu · 12 years ago
  10. b41f87f Code review on removeTip -- 2013.9.25 by Anbang Xu · 12 years ago
  11. 01927ed Add log to removetip by Anbang Xu · 12 years ago
  12. 97dd3be sort stats output by Jake Biesinger · 12 years ago
  13. 6bb2077 add STATS step, saving counters to txt file by Jake Biesinger · 12 years ago
  14. 8b4bef3 fix driver's args by Jake Biesinger · 12 years ago
  15. 79e61c0 pass conf directly to hadoop graphbuild by Jake Biesinger · 12 years ago
  16. 89a4708 standardize kmer name in hadoop graphbuild by Jake Biesinger · 12 years ago
  17. 11f92af change names of hyracks graphbuild enums by Jake Biesinger · 12 years ago
  18. 31f93d6 refactor driver init by Jake Biesinger · 12 years ago
  19. 787d6a2 refactor/reorder driver code by Jake Biesinger · 12 years ago
  20. 952da34 allow non-pregelix jobs to be interleaved with pregelix jobs by Jake Biesinger · 12 years ago
  21. 1a0ca94 restrict -pipelineOrder: BUILD* must occur at most once and come first by Jake Biesinger · 12 years ago
  22. 28162e5 add hadoop job for graph statistics (uses counters) by Jake Biesinger · 12 years ago
  23. 0d1f7ba Apply logReadIds to EdgeWritable by Anbang Xu · 12 years ago
  24. f65b2e5 Add logReadIds option to driver by Anbang Xu · 12 years ago
  25. bf8d060 ADD #iteration to log by Anbang Xu · 12 years ago
  26. 6b5caff Extract common method for P1 and P4 by Anbang Xu · 12 years ago
  27. aafca2f Add logging to P1 by Anbang Xu · 12 years ago
  28. 9614206 Merge branch 'genomix/fullstack_genomix' of https://code.google.com/p/hyracks into genomix/fullstack_genomix by Anbang Xu · 12 years ago
  29. ed271fd ADD some comments by Anbang Xu · 12 years ago
  30. be75f8e fix another NPE for -debugKmers by Jake Biesinger · 12 years ago
  31. 08d4d04 reformat code and remove some debug checks (msgs only from neighbors anyway) by Jake Biesinger · 12 years ago
  32. 8ba5da2 fix NPE for debugKmers by Jake Biesinger · 12 years ago
  33. 09036bb add cmdline option to specify kmers to log by Jake Biesinger · 12 years ago
  34. d0ae604 fix hyracks graphbuilding to match new interface (pass in normalizer) by Jake Biesinger · 12 years ago
  35. a3ec17d Merge branch 'genomix/fullstack_genomix' into wbiesing/refactor_p4 by Jake Biesinger · 12 years ago
  36. 81e67dc Remove jar deploy messages from hyracks driver by Jake Biesinger · 12 years ago
  37. 3e02877 refactor names in getKmerNeighbors.py by Jake Biesinger · 12 years ago
  38. 807b452 Add more restriction for chooseMergedir by Anbang Xu · 12 years ago
  39. b7bf37c Change driver to run P1 by Anbang Xu · 12 years ago
  40. 59ee6a1 Prepare to run P1 by Anbang Xu · 12 years ago
  41. fd9229e Clean up code and move to cluster to test P0 by Anbang Xu · 12 years ago
  42. 82a9005 P0(refactor version of P1) pass all small testcases by Anbang Xu · 12 years ago
  43. e5ddfc4 Sender msg edgetype need to fix by Anbang Xu · 12 years ago
  44. 671cf67 Simply P1 and add throw Exception to it by Anbang Xu · 12 years ago
  45. 8009477 Refactor P1 by Anbang Xu · 12 years ago
  46. 0a04676 use a list of kmers for verbose mode by Jake Biesinger · 12 years ago
  47. b633dc3 Merge with main branch after some refactor by Anbang Xu · 12 years ago
  48. 65a8336 Keep old version of ComplexBubbleMerge by Anbang Xu · 12 years ago
  49. b6a3caff Refactoring BubbleMerge by Anbang Xu · 12 years ago
  50. d47cd28 add 10 test cases for edgelistWritable by Nan Zhang · 12 years ago
  51. 52cb426 small tweaks for Edge Test by Nan Zhang · 12 years ago
  52. a128e4b Simplify the main compute function of removetip and removelowcoverage by Anbang Xu · 12 years ago
  53. 1c73130 Refactor removeLowCoverage by Anbang Xu · 12 years ago
  54. 9908512 Refactor tipremove by Anbang Xu · 12 years ago
  55. 14f3c71 Add DIR.edgeType() to covert dir to edgeTypew by Anbang Xu · 12 years ago
  56. f91c5bb Refactor broadcaseMerge to sendMergeMsg by Anbang Xu · 12 years ago
  57. cb7ebcd Finish integration by Anbang Xu · 12 years ago
  58. 0958af1 Pass tests by Anbang Xu · 12 years ago
  59. 88e742e Fix other pattherns by Anbang Xu · 12 years ago
  60. 205471f Apply EDGETYPE to P4 by Anbang Xu · 12 years ago
  61. f7d0baf Add enum EDGETYPE by Anbang Xu · 12 years ago
  62. 63f0132 add genomix root logger, turn off some other logging by Jake Biesinger · 12 years ago
  63. ada697a add option for verbose and log (one of) the problem kmer(s) by Jake Biesinger · 12 years ago
  64. f709d73 Merge with Jake's refactor branch by Anbang Xu · 12 years ago
  65. af493b5 Prepare to integrate by Anbang Xu · 12 years ago genomix/anbangx/before-pathmerge-refactor genomix/old-code v1.4
  66. 72db6e0 Code review on genomix-data -- 2013.9.20 by Anbang Xu · 12 years ago
  67. 71ddf5f BUGFIX: EdgeListWritable makes a deep copy by Jake Biesinger · 12 years ago
  68. a100ad9 BUGFIX: make a deep copy in EdgeListWritable by Jake Biesinger · 12 years ago
  69. ba2b0a7 only check for tandem repeats at start and after merge (not after updates) by Jake Biesinger · 12 years ago
  70. a4a5ae9 more consistent voteToHalt/activate in P4 by Jake Biesinger · 12 years ago
  71. 4494560 code review on P4 refactor by Jake Biesinger · 12 years ago
  72. f54b5e9 Fix syntax errors in P1 (probably still broken though) by Jake Biesinger · 12 years ago
  73. 6a19516 refactor of P4 passes test cases (P1 broken) by Jake Biesinger · 12 years ago
  74. fc3ddfa more helper functions for DIR and DirectionFlag by Jake Biesinger · 12 years ago
  75. db9186e Merge updateState and sendMsg into on step by Anbang Xu · 12 years ago
  76. ec97be2 Integrate with Jake's enum mergeDir by Anbang Xu · 12 years ago
  77. bc17671 Add some function util by Anbang Xu · 12 years ago
  78. 8fa68de use getDest by Anbang Xu · 12 years ago
  79. 3b5c6bd WIP: refactor P4 (broken) by Jake Biesinger · 12 years ago
  80. a44ad6f Helper functions for DIR by Jake Biesinger · 12 years ago
  81. 6efdb29 fix logging file for pregelix test cases by Jake Biesinger · 12 years ago
  82. ff90e10 Add an iterable for Edge keys by Jake Biesinger · 12 years ago
  83. 21e8120 getDestVertexId has some issues, which may cause problem on P4 by Anbang Xu · 12 years ago
  84. ecdc0f6 Make setReplaceDir and setDeleteDir by Anbang Xu · 12 years ago
  85. e248d53 add CHECK_SYMMETRY to driver by Jake Biesinger · 12 years ago
  86. c91c084 code review on genomix-driver -- 2013.9.18 by Anbang Xu · 12 years ago
  87. 88640f6 Use mergeDir in check condition and move setMergeDir and sendUpdateMsg out of check condition by Anbang Xu · 12 years ago
  88. 3afaa26 Simply sendMergeMsg() by Anbang Xu · 12 years ago
  89. 4da7e66 add CHECK_SYMMETRY to driver by Jake Biesinger · 12 years ago
  90. 1848aa3 Process information before sending message by Anbang Xu · 12 years ago
  91. af88e04 Aggregate all the incomingMsgs first, then make a decision based aggregateMsg by Anbang Xu · 12 years ago
  92. 9703a5c Change non-head to path by Anbang Xu · 12 years ago
  93. 1491f7f refactor to use general NEXT and PREVIOUS directions by Anbang Xu · 12 years ago
  94. a4144e7 Merge remote-tracking branch 'origin/nanzhang/genomix_hyracks' into genomix/new_merge_master by Nan Zhang · 12 years ago
  95. 5793b66 run normally after merge by Nan Zhang · 12 years ago
  96. fde129e update kmerNeighbors script by Jake Biesinger · 12 years ago
  97. 2876f0e Merge branch 'anbangx/code_review2' into genomix/fullstack_genomix by Anbang Xu · 12 years ago
  98. f307307 Clean up some code by Anbang Xu · 12 years ago
  99. efbeca5 Simplifying sendSettleMsgs by Anbang Xu · 12 years ago
  100. ee1e1e1 bit clean and move the member of subclass to derived class by Anbang Xu · 12 years ago