Log - 8379d7f53265be07faa51a1c7a66c44ec1bd00ab - hyracks

5a69e16 refactor graph building in hyracks using new genomix-data code by Nan Zhang · 12 years ago
f2507bf debugging for hyracks by Nan Zhang · 12 years ago
844d774 update the genomix-data by Nan Zhang · 12 years ago
0f33ece use new genomix-data by Nan Zhang · 12 years ago
fe8cb0f Merge branch 'genomix/fullstack_genomix' into nanzhang/hyracks_genomix by Nan Zhang · 12 years ago
1307443 P2 pass test1,2,3,4 by Anbang Xu · 12 years ago
d253d8f fix mergeWithRFKmer by Anbang Xu · 12 years ago
67c5eef Merge branch 'genomix/fullstack_genomix' into nanzhang/hyracks_genomix by Nan Zhang · 12 years ago
4d50d8a Merge branch 'genomix/fullstack_genomix' into nanzhang/hyracks_genomix by Nan Zhang · 12 years ago
a5e97c7 p4 pass test by Anbang Xu · 12 years ago
4416d3c debugging p4 by Anbang Xu · 12 years ago
311001a start to change graph clean part to 'contrail-graph' structure by Anbang Xu · 12 years ago
dfa14d3 Fix NodeWritable and Finish contrail-graph Mapper/Reducer by Anbang Xu · 12 years ago genomix/velvet-graph-pregel
95138a4 hyracks contrail graph building partial completing by Nan Zhang · 12 years ago
84e385f Try to add globe kmerSize but fail in testing by Anbang Xu · 12 years ago
bcf5a70 add hadoop test and keep both bin and txt by Anbang Xu · 12 years ago
f7a23e4 add Reducer and change PositionWritable to PositionListWritable in NodeWritable by Anbang Xu · 12 years ago
0c644f4 Mapper passes test by Anbang Xu · 12 years ago
32bc798 finish Mapper and start Reducer by Anbang Xu · 12 years ago
08c7d2d change KmerListWritable and NodeWritable to new construction for new graph-'Kmer-Base system as key' by Anbang Xu · 12 years ago
b14e7e6 Update for changing graph by Anbang Xu · 12 years ago
8dbe728 refactor 'size' to 'kmerByteSize' in KmerBytesWritable by Anbang Xu · 12 years ago
f7fc945 refactor 'UniqueKey' to 'NodeId' by Anbang Xu · 12 years ago
1a02870 add ReadsKeyValueParserFactory for new graph using for read HDFS by Anbang Xu · 12 years ago
871743c add IntermediateNodeWritable and KmerListWritable by Anbang Xu · 12 years ago
c642eeb new graph driver by Anbang Xu · 12 years ago
0a8e068 add makeUUID to PositionWritable; use for test cases by Jake Biesinger · 12 years ago
aef7aaa meatier test case and tweaks for PositionWritable by Jake Biesinger · 12 years ago
a9eafe7 Make PositionListWritable test code by Anbang Xu · 12 years ago
67254bc Merge branch 'anbangx/fullstack_genomix' into genomix/fullstack_genomix by Anbang Xu · 12 years ago
6010f35 Make the PositionWritable and Pass the test by Anbang Xu · 12 years ago
6b45971 Fix H4, test templates by Jake Biesinger · 12 years ago
de2424c begin new graph building by Anbang Xu · 12 years ago
de2a44b small adjustments to new node and position classes by Jake Biesinger · 12 years ago
970c74f move old key/value class to oldtype folder by Anbang Xu · 12 years ago
814540a remake new graph class - PositionWritable and NodeWritable by Anbang Xu · 12 years ago
9378de1 change directionFlag back by Anbang Xu · 12 years ago
3054c15 clear the code and fix messageFlag by Anbang Xu · 12 years ago
b5c8428 test cases by AnbangX · 12 years ago
da3b802 Apply undirected graph algorithm in p2 by AnbangX · 12 years ago
8e4fbc3 test cases and fixes for H4 by Jake Biesinger · 12 years ago
b5e81d6 Merge branch 'anbangx/fullstack_genomix' into genomix/fullstack_genomix by AnbangX · 12 years ago
e6d7e7a code review with Jake by AnbangX · 12 years ago
64ae953 Add mergeInDir for kmers by Jake Biesinger · 12 years ago
e1dbea7 add subclass BasicVertex and fixing p2 by AnbangX · 12 years ago
46fc86e add test cases for removeBridge, removeTip and mergeBubble by AnbangX · 12 years ago
db5d564 WIP H4 1 mapper + 2 reducers by Jake Biesinger · 12 years ago
5adaeec add merge and update utility functions by Jake Biesinger · 12 years ago
71ea5d2 Fix RFMerge and add tests by Jake Biesinger · 12 years ago
01ad7c2 Merge and fix FRMerge. RF still doesn't work. by Jake Biesinger · 12 years ago
ab171ba refactor kmer mergeNext and mergePre -> mergeFF etc. untested :) by Jake Biesinger · 12 years ago
a7216ac Add helper functions for mutating PositionListWritable's by Jake Biesinger · 12 years ago
24e076f PathNodeInitial identifies nodes needing updates by Jake Biesinger · 12 years ago
cc77cf7 add test cases for path merge and other data clean patterns by AnbangX · 12 years ago
2c41eb3 add remove in PositionListWritable and test by AnbangX · 12 years ago
1e43ac4 Merge branch 'genomix/fullstack_genomix' of https://code.google.com/p/hyracks into jianfeng/genomix by Jianfeng Jia · 12 years ago
09cf1d1 facilitate better testing via more constructors and proper hashing/equals by Jake Biesinger · 12 years ago
bc7e15f Merge branch 'genomix/fullstack_genomix' into jianfeng/genomix by Jianfeng Jia · 12 years ago
bf8f525 Fix spelling by Jake Biesinger · 12 years ago
37cc20b hadoop graph building completion by Nan Zhang · 12 years ago
eb8d72a Merge commit '951870ef4642f2003c4240eeef702fc90600fe77' into nanzhang/genomix by Nan Zhang · 12 years ago
3a26a3a merge with jianfeng-reverse by Nan Zhang · 12 years ago
a591f26 clean up code and add copyright header by JavierJia · 12 years ago
12b4280 Merge branch 'jianfeng/genomix' into jianfeng/genomix-reverse by Jianfeng Jia · 12 years ago
5ba19e2 add more information for larger data debug by Jianfeng Jia · 12 years ago genomix/unidirection
562116a finished framework. not test yet by Jianfeng Jia · 12 years ago
8528899 finish framework by Jianfeng Jia · 12 years ago
5033f6f Update comment. by Jianfeng Jia · 12 years ago
587ddb7 finished merge pre and merge next test by Jianfeng Jia · 12 years ago
7f506a1 modify the DeepGraphBuildingMapper by Nan Zhang · 12 years ago
8663daa Merge branch 'nanzhang/genomix' into genomix/fullstack_genomix by Nan Zhang · 12 years ago
0669e98 add isPathNode to NodeWritable by Jake Biesinger · 12 years ago
7c14c8f Merge branch 'genomix/fullstack_genomix' of https://code.google.com/p/hyracks into jianfeng/genomix by Jianfeng Jia · 12 years ago
369fccb update the velvetGrapubuilding package by Nan Zhang · 12 years ago
f14c403 add mergeNext function to kmerWritable by Jianfeng Jia · 12 years ago
7636684 refine the logic of generate Node by Jianfeng Jia · 12 years ago
103df19 Merge branch 'genomix/fullstack_genomix' of https://code.google.com/p/hyracks into genomix/fullstack_genomix by AnbangX · 12 years ago
f5d6db9 change all input and output format to new version by AnbangX · 12 years ago
c49ce70 add package to build old package success by Nan Zhang · 12 years ago
529a089 finished EndToEnd test by Jianfeng Jia · 12 years ago
80b312a passed map kmer to readid operator by Jianfeng Jia · 12 years ago
ee2e038 finished test framework by JavierJia · 12 years ago
1d11e0a finish position test by JavierJia · 12 years ago
5d192ad finished genomix-hyracks end to end by JavierJia · 12 years ago
e85c8a7 merge with hadoop code by JavierJia · 12 years ago
ee1fa17 Merge branch 'genomix/velvet_graphbuilding' of https://code.google.com/p/hyracks into genomix/velvet_graphbuilding by JavierJia · 12 years ago
fe1391a passed genomix-data test by JavierJia · 12 years ago
e34200e create some writable based on Jianfeng's hyracks by Nan Zhang · 12 years ago
ba0d0d8 clean up kmerWritable by JavierJia · 12 years ago
4c33a7a finished framework by JavierJia · 12 years ago
136c411 finish mapKmerToReadID by JavierJia · 12 years ago
4803aea compatible with invalid read by Jianfeng Jia · 12 years ago
0495424 supprt zero-length kmer setting by JavierJia · 12 years ago
e83982b add clearLeadBit into KmerOperation by JavierJia · 12 years ago
3c3f2b7 Change return value of shiftKmer from bitmap to genecode by JavierJia · 12 years ago
bc974c4 change comparitor by JavierJia · 12 years ago
25e22f1 add protect to array index overflow by JavierJia · 12 years ago
483934a add getSubKmer function by JavierJia · 12 years ago
0076326 add default empty constructor for hadoop version by JavierJia · 12 years ago
0a7f115 make genomix-hyracks pass the test by JavierJia · 12 years ago