Log - 7b57ae631d4f392ea76a7f5290df19896ab7465f - hyracks

7b57ae6 add RandomSeed by Anbang Xu · 12 years ago
5e03163 Add logging.properties to genomix-driver by Anbang Xu · 12 years ago
30ecc2d Refactore FineOnlyFormatter to PathMergeFormatter by Anbang Xu · 12 years ago
b78d555 Don't use customer formatter anymore, everything uses java.util.Logger by Anbang Xu · 12 years ago
20a80e6 standardize logging across eclipse-test, eclipse-main, and maven by Jake Biesinger · 12 years ago
668f8a3 configure parameter of java.util.logger and prepare to test simple logger by Anbang Xu · 12 years ago
a3e7a7c Add setAsCopy to VertexValueWritable and MessageWritable and format the output of Logging by Anbang Xu · 12 years ago
4f916d6 add automatic clean log store by Anbang Xu · 12 years ago
56626a7 add loggingNode method() by Anbang Xu · 12 years ago
df811e5 add SymmetryChecker by Anbang Xu · 12 years ago
6c79239 add AAA testcase by Anbang Xu · 12 years ago
4c416ff Delete isFakeVertex() check by Anbang Xu · 12 years ago
3475209 Extract method name and make it meaningful by Anbang Xu · 12 years ago
8fa9d09 P1 pass all the test. P1 should be correct one and can be used to do comparison by Anbang Xu · 12 years ago
11558a0 P1 pass test, except head_7(which has multiple updates) by Anbang Xu · 12 years ago
4bb7716 add testcase for P1 by Anbang Xu · 12 years ago
6a47868 Fix P1 by Anbang Xu · 12 years ago
aa74657 P1 pass testcase in which #pathnode is even by Anbang Xu · 12 years ago
1a7bc8b Fix a bug in sendUpdateMsg(). setMergeDir should be in the front of sendUpdateMsg by Anbang Xu · 12 years ago
cc1135b change addEdge to unionEdge in update by Anbang Xu · 12 years ago
4b21369 Fix TandemRepeatAndCycle bug by Anbang Xu · 12 years ago
3e91447 add test case for tandem repeats with multiple self-edges by Jake Biesinger · 12 years ago
5ecb66f seperate MessageFlag and State by Anbang Xu · 12 years ago
67ae8ad ADD more testcases for pathmerge by Anbang Xu · 12 years ago
63e5756 add lock to fakenode exist check by Anbang Xu · 12 years ago
db7f854 clean up useless code by Anbang Xu · 12 years ago
385dca4 Add sychnized lock to P2 to avoid duplicate fake nodes by Anbang Xu · 12 years ago
24f2ead add boolean flag to switch method between P2 and P4 by Anbang Xu · 12 years ago
2acd0b6 Fix one bug in P2/P4 by Anbang Xu · 12 years ago
ae62ffe P2 pass all the tests except cycle by Anbang Xu · 12 years ago
20a03b1 add kmerAndDirWritable by Anbang Xu · 12 years ago
6485489 Final Vertex Has correct edgelist by Anbang Xu · 12 years ago
fad0703 going to use different rules to identify head by Anbang Xu · 12 years ago
9de0ad3 P2 pass single tests by Anbang Xu · 12 years ago
14d58f0 remove sendOutUpdate for head(P2 debug) by Anbang Xu · 12 years ago
522b5ff Change update condition by Anbang Xu · 12 years ago
99d5629 Fix a bug in configure isFlip by Anbang Xu · 12 years ago
7da37db P2 internalKmer merge is completed in single path test by Anbang Xu · 12 years ago
3d9ecc5 p2 pass test 2,3 by Anbang Xu · 12 years ago
d5f760c add p2 graph input format, initiate prependMergeNode and appendMergeNode by Anbang Xu · 12 years ago
362358f seperate io folder to io.common and io.message by Anbang Xu · 12 years ago
01c5e31 add subclass V to extend VertexValueWritable by Anbang Xu · 12 years ago
36fb2e2 Merge with main brnach by Anbang Xu · 12 years ago
5cda522 format test case by Anbang Xu · 12 years ago
81833a0 add scaffoldingAggregator by Anbang Xu · 12 years ago
7a47e8b Begin to debug P2 by Anbang Xu · 12 years ago
4da15b2 add many similar bubbles in one pattern test case and BubbleMerge pass test by Anbang Xu · 12 years ago
a9c60b3 The aggregator for all the patterns are completed by Anbang Xu · 12 years ago
1aed014 add statistics counters to removeTip, pathMerge, removeBridge by Anbang Xu · 12 years ago
7f2208f PathMerge aggregator is completed by Anbang Xu · 12 years ago
52a279f Aggregator passes test by Anbang Xu · 12 years ago
b1c7809 testing by Anbang Xu · 12 years ago
f3a548c move aggregator output to test by Anbang Xu · 12 years ago
ca28b1b add StatisticsCounterAggregator by Anbang Xu · 12 years ago
8c187a6 add RandonWalk test case by Anbang Xu · 12 years ago
e71a964 Unroll Repeat pass test by Anbang Xu · 12 years ago
17b99f2 add stop haltNode in pathmerge and fix the bug Jake mentioned by Anbang Xu · 12 years ago
39cfc58 add synthetic test case by Jake Biesinger · 12 years ago
9dec13e remove generated genomix-pregel test case xml files by Jake Biesinger · 12 years ago
c2aa582 Merge branch 'anbangx/backupMergingWithMaster' into genomix/fullstack_genomix by Jake Biesinger · 12 years ago
1e03787 Merge branch 'anbangx/backupMergingWithMaster_errorcase' into wbiesing/merge_fs_backup by Jake Biesinger · 12 years ago
b19ba95 BubbleMerge pass complicated test cases by Anbang Xu · 12 years ago
fc4fe25 add failing pathmerge testcase by Jake Biesinger · 12 years ago
32a956b fix one bug in path merge by Anbang Xu · 12 years ago
630586c add test case for synthetic data by Jake Biesinger · 12 years ago
5747845 Pregelix JobGenerator uses proper GenomixJobConf by Jake Biesinger · 12 years ago
96eab83 Merge branch 'anbangx/backupMergingWithMaster' into wbiesing/driver_backup_merge by Jake Biesinger · 12 years ago
26e7332 BubbleMerge test is almost finished except grid test case by Anbang Xu · 12 years ago
ab0b235 test Rectangle by Anbang Xu · 12 years ago
85dfedf Add broadcaseKillselfAndNoticeToUpdateEdges and responseToDeadVertexAndUpdateEdges by Anbang Xu · 12 years ago
c0b37b1 change bubble's pre-condition -- pathNode to anyNode by Anbang Xu · 12 years ago
e763a06 add complicated test case for BubbleMerge by Anbang Xu · 12 years ago
6ddc6cc testing BubbleMerge by Anbang Xu · 12 years ago
3aba0f0 SplitRepeat test is completed by Anbang Xu · 12 years ago
41ffd05 Merge with main branch by Anbang Xu · 12 years ago
4a9e45c Add testcases for SplitRepeat by Anbang Xu · 12 years ago
8270c5a Merge cycle to a single node in path merge. P4 test is completed by Anbang Xu · 12 years ago
d688b5a Add skip tandem repeat to pathmerge. TODO: detect cycle in pathmerge by Anbang Xu · 12 years ago
adac3ef modify path for static test in driver by Jake Biesinger · 12 years ago
87b679f Merge branch 'anbangx/fullstack_genomix' into wbiesing/driver by Jake Biesinger · 12 years ago
2f3e3bb PathMerge pass test except TandemRepeat. TODO: skip TandemRepeat in pathmerge by Anbang Xu · 12 years ago
03434ff add hyracks-built graph as a pregelix test case by Jake Biesinger · 12 years ago
569945a add RF/FR with/without head test for pathmerge by Anbang Xu · 12 years ago
7a75b07 add updateEdges for pathmerge. Issue: mergeWithStartreads by Anbang Xu · 12 years ago
9ac0dda Modify mergeWithKmer to mergeWithNode by Anbang Xu · 12 years ago
6fc84f1 Add additional merge info to pathmerge by Anbang Xu · 12 years ago
d06c50f add testcase for pathmerge by Anbang Xu · 12 years ago
bb9901e re-remove nodes cleared out of Anbang's branch by Jake Biesinger · 12 years ago
639c806 separate config from driver and pipeline setup by Jake Biesinger · 12 years ago
4f05864 Refactor configuration for all jobs into global GenomixJobConf by Jake Biesinger · 12 years ago
ced394a Make pathmerge robost by Anbang Xu · 12 years ago
b37b705 Add UnRollTandemRepeat. TODO: add the corresponding MSG and update edges by Anbang Xu · 12 years ago
6efa434 Completed P2 debugging by Anbang Xu · 12 years ago
a3c0538 Clean up P2 code and prepare to deep debug it by Anbang Xu · 12 years ago
feec5be Fix BubbleMerge by Anbang Xu · 12 years ago
5e01f76 Adapt RemoveLowCoverageVertex to new graph structure. Finally, all the patterns are adapted to new graph by Anbang Xu · 12 years ago
e7856d5 Adapt ScaffoldingVertex to new graph structure by Anbang Xu · 12 years ago
6212780 BTS almost done and wait for EdgeListWritable[dir].getReadIds(Key key) by Anbang Xu · 12 years ago
0217e7e Adapt SplitRepeatVertex to new graph structure. TODO: test AdjSplitRepeat by Anbang Xu · 12 years ago
37a8489 Adapt MergeBubbleVertex to new graph structure. TODO: check if bubble flip and merge all metadata except kmer by Anbang Xu · 12 years ago