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asterix-gerrit.ics.uci.edu / hyracks / 70e6a0fa3acbc9a54b7be4d3e10664596ed9125d / genomix / genomix-hyracks
  1. 62a61f6 NodeWritable: refactor getListFromDir to getEdgeList by Jake Biesinger · 12 years ago
  2. 64f07c9 use direction flag as only public interface for nodewritable edges and threads by Jake Biesinger · 12 years ago
  3. 47fc29c NodeWritable: Remove nodeIdList, refactor edges, add threads, add start/end reads by Jake Biesinger · 12 years ago
  4. 8ded1a3 Clean genomix package and complete mergeing with Master by Anbang Xu · 12 years ago
  5. c5e5abc remove dependency on hyracks-hdfs-core test-jar by Jake Biesinger · 12 years ago
  6. dfd2e50 fix genomix pom.xml's to use 0.2.10-SNAPSHOT by Jake Biesinger · 12 years ago
  7. 153c2d5 add expected results by Nan Zhang · 12 years ago
  8. ef306ca Fix case of AssembleKeyIntoNodeOperator by Nan Zhang · 12 years ago
  9. 5f57f54 small change by Nan Zhang · 12 years ago
  10. 19b758e ervoer testUtils by Nan Zhang · 12 years ago
  11. aeed6f0 delete the old driver by Nan Zhang · 12 years ago
  12. 852df2b complete the old code cleaning by Nan Zhang · 12 years ago
  13. 3e3144b cleanning continue by Nan Zhang · 12 years ago
  14. 7dc9400 clean the useless code for project by Nan Zhang · 12 years ago
  15. 6a7344b add 3 tips test cases for hyracks and add sequence file by Nan Zhang · 12 years ago
  16. 999f6ac add coverage for hyracks graph building by Nan Zhang · 12 years ago
  17. 53da888 code clean by Nan Zhang · 12 years ago
  18. 6ffdef2 add 3 SplitRepeat TestCases and fix the PositionListWitable: UnionUpdate HashSet by Nan Zhang · 12 years ago
  19. 016df5f finish the debugging by Nan Zhang · 12 years ago
  20. 0b9da1e Merge branch 'wbiesing/genomix/VKmers' into nanzhang/hyracks_genomix by Nan Zhang · 12 years ago
  21. c68e510 finish the debugging by Nan Zhang · 12 years ago
  22. 1259632 refactor KmerList -> VKmerList by Jake Biesinger · 12 years ago
  23. ceab4c1 Merge branch 'wbiesing/genomix/VKmers' into nanzhang/hyracks_genomix by Nan Zhang · 12 years ago
  24. 071ec27 modify the test parameter by Nan Zhang · 12 years ago
  25. 8379d7f add the read checker for hyracks by Nan Zhang · 12 years ago
  26. e90120f modify the test for graph building by Nan Zhang · 12 years ago
  27. 5a69e16 refactor graph building in hyracks using new genomix-data code by Nan Zhang · 12 years ago
  28. f2507bf debugging for hyracks by Nan Zhang · 12 years ago
  29. 8cea7fd new graph job built by Nan Zhang · 12 years ago
  30. 5b40242 build graph building job for hyracks by Nan Zhang · 12 years ago
  31. 0f33ece use new genomix-data by Nan Zhang · 12 years ago
  32. be0a038 modify the jobGeBrujinGraph by Nan Zhang · 12 years ago
  33. 3a0b4f2 fix key-value parser bug by Nan Zhang · 12 years ago
  34. a660b8b merge aggregater completes by Nan Zhang · 12 years ago
  35. 9b2c8b6 job generate frame complete by Nan Zhang · 12 years ago
  36. b811143 Refactor KmerBytesWritable to use internal length by Jake Biesinger · 12 years ago
  37. d8d3ccc local aggregator completed by Nan Zhang · 12 years ago
  38. 73ba093 delete the contrail package by Nan Zhang · 12 years ago
  39. ad0a538 complete the dataflow of hyracks by Nan Zhang · 12 years ago
  40. 4d50d8a Merge branch 'genomix/fullstack_genomix' into nanzhang/hyracks_genomix by Nan Zhang · 12 years ago
  41. 95138a4 hyracks contrail graph building partial completing by Nan Zhang · 12 years ago
  42. 0c644f4 Mapper passes test by Anbang Xu · 12 years ago
  43. b14e7e6 Update for changing graph by Anbang Xu · 12 years ago
  44. 8dbe728 refactor 'size' to 'kmerByteSize' in KmerBytesWritable by Anbang Xu · 12 years ago
  45. f7fc945 refactor 'UniqueKey' to 'NodeId' by Anbang Xu · 12 years ago
  46. 6350b0f some changes in ParserFactory by Anbang Xu · 12 years ago
  47. 1a02870 add ReadsKeyValueParserFactory for new graph using for read HDFS by Anbang Xu · 12 years ago
  48. 871743c add IntermediateNodeWritable and KmerListWritable by Anbang Xu · 12 years ago
  49. c642eeb new graph driver by Anbang Xu · 12 years ago
  50. 970c74f move old key/value class to oldtype folder by Anbang Xu · 12 years ago
  51. acde177 add unmerged option in hyracks graph building by Jianfeng Jia · 12 years ago
  52. bc7e15f Merge branch 'genomix/fullstack_genomix' into jianfeng/genomix by Jianfeng Jia · 12 years ago
  53. 0e69045 change iterator to for loop to save time. by Jianfeng Jia · 12 years ago
  54. bf8f525 Fix spelling by Jake Biesinger · 12 years ago
  55. c49f7b9 add warning of huge overlap by Jianfeng Jia · 12 years ago
  56. 471f75c remove the "new" block. by Jianfeng Jia · 12 years ago
  57. eb8d72a Merge commit '951870ef4642f2003c4240eeef702fc90600fe77' into nanzhang/genomix by Nan Zhang · 12 years ago
  58. 3a26a3a merge with jianfeng-reverse by Nan Zhang · 12 years ago
  59. a591f26 clean up code and add copyright header by JavierJia · 12 years ago
  60. bf9401e increase default frameSize to 128K by Jianfeng Jia · 12 years ago
  61. 8040709 add log to watch the tuple size by Jianfeng Jia · 12 years ago
  62. 12b4280 Merge branch 'jianfeng/genomix' into jianfeng/genomix-reverse by Jianfeng Jia · 12 years ago
  63. 5ba19e2 add more information for larger data debug by Jianfeng Jia · 12 years ago genomix/unidirection
  64. 8a50889 fix outputKmerFactory racing problem by Jianfeng Jia · 12 years ago
  65. 33dc862 fix debugNc script by JavierJia · 12 years ago
  66. dba2ebf Merge branch 'jianfeng/genomix' into jianfeng/genomix-reverse by Jianfeng Jia · 12 years ago
  67. 22616cf fixed the racing problem by Jianfeng Jia · 12 years ago
  68. 763ee99 fix builder.reset bug by JavierJia · 12 years ago
  69. aa985fe Merge branch 'jianfeng/genomix' into jianfeng/genomix-reverse by Jianfeng Jia · 12 years ago
  70. 1f37dce fix builder.reset bug by JavierJia · 12 years ago
  71. 1d7de64 Merge branch 'jianfeng/genomix' into jianfeng/genomix-reverse by Jianfeng Jia · 12 years ago
  72. 1be1d3e fix binary format test by JavierJia · 12 years ago
  73. 6e8b44b change pom main class by Jianfeng Jia · 12 years ago
  74. bb2dd3f change main class by Jianfeng Jia · 12 years ago
  75. f6640db Passed test by Jianfeng Jia · 12 years ago
  76. 562116a finished framework. not test yet by Jianfeng Jia · 12 years ago
  77. 8528899 finish framework by Jianfeng Jia · 12 years ago
  78. f14c403 add mergeNext function to kmerWritable by Jianfeng Jia · 12 years ago
  79. 7636684 refine the logic of generate Node by Jianfeng Jia · 12 years ago
  80. 529a089 finished EndToEnd test by Jianfeng Jia · 12 years ago
  81. 9804780 passed readid groupby test by Jianfeng Jia · 12 years ago
  82. 80b312a passed map kmer to readid operator by Jianfeng Jia · 12 years ago
  83. c2bb663 passed kmer groupby test by Jianfeng Jia · 12 years ago
  84. c5172dd reformat JobGen to avoid NonSerializable exception by Jianfeng Jia · 12 years ago
  85. ee2e038 finished test framework by JavierJia · 12 years ago
  86. 6b5f7a2 update the test to genomix-hyracks by JavierJia · 12 years ago
  87. 1d11e0a finish position test by JavierJia · 12 years ago
  88. 5d192ad finished genomix-hyracks end to end by JavierJia · 12 years ago
  89. e85c8a7 merge with hadoop code by JavierJia · 12 years ago
  90. fe1391a passed genomix-data test by JavierJia · 12 years ago
  91. ba0d0d8 clean up kmerWritable by JavierJia · 12 years ago
  92. d158252 finish design of NodeReferenc API by JavierJia · 12 years ago
  93. 4c33a7a finished framework by JavierJia · 12 years ago
  94. 136c411 finish mapKmerToReadID by JavierJia · 12 years ago
  95. d061bf1 make hyracks test pass by JavierJia · 12 years ago
  96. 950d05e add more testcase by AnbangX · 12 years ago
  97. 9e6792f bump versions in poms by buyingyi · 12 years ago
  98. 4803aea compatible with invalid read by Jianfeng Jia · 12 years ago
  99. 3c3f2b7 Change return value of shiftKmer from bitmap to genecode by JavierJia · 12 years ago
  100. 6050d12 export JAVA_HOME in script while by JavierJia · 12 years ago