Log - 6ffdef2b149b6d36f45460f775f7d41aa937826c - hyracks

0b9da1e Merge branch 'wbiesing/genomix/VKmers' into nanzhang/hyracks_genomix by Nan Zhang · 12 years ago
c68e510 finish the debugging by Nan Zhang · 12 years ago
ff02e22 Use VKmers in lists by Jake Biesinger · 12 years ago
1259632 refactor KmerList -> VKmerList by Jake Biesinger · 12 years ago
5eaa799 Merge commit '94e075b5c3db9aa613ef61c2581430a143b17bc8' into nanzhang/hyracks_genomix by Nan Zhang · 12 years ago
94e075b update for merge by Anbang Xu · 12 years ago
6ee7bdf fix HashSet in SplitRepeat by Anbang Xu · 12 years ago
0049eac refactor 'NaiveAlgorithm' to 'P1' and add test case for SplitRepeat by Anbang Xu · 12 years ago
d57d7e5 add CreatedVertex and ConnectedTable by Anbang Xu · 12 years ago
844d774 update the genomix-data by Nan Zhang · 12 years ago
d94f5f9 refactor 'BasicPathMergeVertex' to 'BasicGraphCleanVertex', make it more general by Anbang Xu · 12 years ago
29ebdc8 Map/Reduce version in pregel is completed by Anbang Xu · 12 years ago
d6276e7 p2 pass test by Anbang Xu · 12 years ago
0f33ece use new genomix-data by Nan Zhang · 12 years ago
9e00650 p2 pass all the tests except 9 by Anbang Xu · 12 years ago
d253d8f fix mergeWithRFKmer by Anbang Xu · 12 years ago
a5e97c7 p4 pass test by Anbang Xu · 12 years ago
4416d3c debugging p4 by Anbang Xu · 12 years ago
84e385f Try to add globe kmerSize but fail in testing by Anbang Xu · 12 years ago
bcf5a70 add hadoop test and keep both bin and txt by Anbang Xu · 12 years ago
08c7d2d change KmerListWritable and NodeWritable to new construction for new graph-'Kmer-Base system as key' by Anbang Xu · 12 years ago
aef7aaa meatier test case and tweaks for PositionWritable by Jake Biesinger · 12 years ago
a9eafe7 Make PositionListWritable test code by Anbang Xu · 12 years ago
6010f35 Make the PositionWritable and Pass the test by Anbang Xu · 12 years ago
de2424c begin new graph building by Anbang Xu · 12 years ago
970c74f move old key/value class to oldtype folder by Anbang Xu · 12 years ago
46fc86e add test cases for removeBridge, removeTip and mergeBubble by AnbangX · 12 years ago
71ea5d2 Fix RFMerge and add tests by Jake Biesinger · 12 years ago
01ad7c2 Merge and fix FRMerge. RF still doesn't work. by Jake Biesinger · 12 years ago
ab171ba refactor kmer mergeNext and mergePre -> mergeFF etc. untested :) by Jake Biesinger · 12 years ago
2c41eb3 add remove in PositionListWritable and test by AnbangX · 12 years ago
5033f6f Update comment. by Jianfeng Jia · 12 years ago
587ddb7 finished merge pre and merge next test by Jianfeng Jia · 12 years ago
f14c403 add mergeNext function to kmerWritable by Jianfeng Jia · 12 years ago
1d11e0a finish position test by JavierJia · 12 years ago
fe1391a passed genomix-data test by JavierJia · 12 years ago
ba0d0d8 clean up kmerWritable by JavierJia · 12 years ago
3c3f2b7 Change return value of shiftKmer from bitmap to genecode by JavierJia · 12 years ago
483934a add getSubKmer function by JavierJia · 12 years ago
0c37dd0 make genomix-hadoop genomix-hyracks compilable by JavierJia · 12 years ago
be165dd split Kmer into fixsize Kmer and variablesize VKmer by JavierJia · 12 years ago
48a21c3 make genomix-data test passed by JavierJia · 12 years ago
99641ad fix the bugs of mergeTwoKmer when nextK mod 4 == 0 by Jianfeng Jia · 12 years ago
74b72ca change fix bytes array to flexible bytes with offset and length in KmerUtil by jianfeng.jia@gmail.com · 12 years ago
cdc5917 upload the graph of the test case by anbangx · 12 years ago
14e6742 add shiftKmer into KmerUtil by jianfeng.jia@gmail.com · 12 years ago
5842ee3 add KmerUtil for merge or join operation by jianfeng.jia@gmail.com · 12 years ago
d5b6dc7 add reversed kmer option by jianfeng.jia@gmail.com · 12 years ago
7b6a3c7 change to genomix-data by jianfeng.jia@gmail.com · 12 years ago