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asterix-gerrit.ics.uci.edu / hyracks / 6efdb29832f947bee26135bdd897ae8a72bd07b1 / genomix / genomix-hadoop / data
  1. 53cc7e3 Merge branch 'wbiesing/debug' into genomix/fullstack_genomix by Jake Biesinger · 12 years ago
  2. 4273653 add ThreeNodesCycle, and it succeeds to pass test by Anbang Xu · 12 years ago
  3. de16f37 add AlreadyInEdge test case by Jake Biesinger · 12 years ago
  4. 03ba0f7 Add simple RF FR RF test case by Jake Biesinger · 12 years ago
  5. 14fb2b9 add random test et by Anbang Xu · 12 years ago
  6. df811e5 add SymmetryChecker by Anbang Xu · 12 years ago
  7. 6c79239 add AAA testcase by Anbang Xu · 12 years ago
  8. cc1135b change addEdge to unionEdge in update by Anbang Xu · 12 years ago
  9. 4b21369 Fix TandemRepeatAndCycle bug by Anbang Xu · 12 years ago
  10. 3e91447 add test case for tandem repeats with multiple self-edges by Jake Biesinger · 12 years ago
  11. 6485489 Final Vertex Has correct edgelist by Anbang Xu · 12 years ago
  12. 4da15b2 add many similar bubbles in one pattern test case and BubbleMerge pass test by Anbang Xu · 12 years ago
  13. ca28b1b add StatisticsCounterAggregator by Anbang Xu · 12 years ago
  14. 8c187a6 add RandonWalk test case by Anbang Xu · 12 years ago
  15. 39cfc58 add synthetic test case by Jake Biesinger · 12 years ago
  16. b19ba95 BubbleMerge pass complicated test cases by Anbang Xu · 12 years ago
  17. 32a956b fix one bug in path merge by Anbang Xu · 12 years ago
  18. 26e7332 BubbleMerge test is almost finished except grid test case by Anbang Xu · 12 years ago
  19. c0b37b1 change bubble's pre-condition -- pathNode to anyNode by Anbang Xu · 12 years ago
  20. e763a06 add complicated test case for BubbleMerge by Anbang Xu · 12 years ago
  21. 6ddc6cc testing BubbleMerge by Anbang Xu · 12 years ago
  22. 3aba0f0 SplitRepeat test is completed by Anbang Xu · 12 years ago
  23. 4a9e45c Add testcases for SplitRepeat by Anbang Xu · 12 years ago
  24. d688b5a Add skip tandem repeat to pathmerge. TODO: detect cycle in pathmerge by Anbang Xu · 12 years ago
  25. 569945a add RF/FR with/without head test for pathmerge by Anbang Xu · 12 years ago
  26. 9ac0dda Modify mergeWithKmer to mergeWithNode by Anbang Xu · 12 years ago
  27. d06c50f add testcase for pathmerge by Anbang Xu · 12 years ago
  28. de3a280 Merge branch 'nanzhang/hyracks_genomix' into genomix/fullstack_genomix by Nan Zhang · 12 years ago
  29. e7856d5 Adapt ScaffoldingVertex to new graph structure by Anbang Xu · 12 years ago
  30. 0217e7e Adapt SplitRepeatVertex to new graph structure. TODO: test AdjSplitRepeat by Anbang Xu · 12 years ago
  31. 977a413 Adapt BridgeAddVertex and BridgeRemoveVertex to new graph structure by Anbang Xu · 12 years ago
  32. 128eb0e Revert "update hyracks_genomix branch" by Nan Zhang · 12 years ago
  33. 9a664b7 update hyracks_genomix branch by Nan Zhang · 12 years ago
  34. 585dbb5 fastq parser for hadoop graphbuild by Jake Biesinger · 12 years ago
  35. 58875bf delete SelfPath.txt~ by Anbang Xu · 12 years ago
  36. 202f2ab Hadoop graphbuild uses filename for mateid; tests by Jake Biesinger · 12 years ago
  37. 2d17c5b Complete the Graph construction(Hadoop) by Anbang Xu · 12 years ago
  38. 13348bf Graph construcion is completed by Anbang Xu · 12 years ago
  39. 67c7e22 debuging SplitRepeatVertex by Anbang Xu · 12 years ago
  40. bb8e581 Complete NaiveBFSTraverse and make more test cases by Anbang Xu · 12 years ago
  41. be39f91 Add AverageCoverage to graph construction(hadoop) and make graphviz more pretty by Anbang Xu · 12 years ago
  42. ac6b1a6 RemoveBridge pass test and add RemoveLowCoverage and Scaffolding by Anbang Xu · 12 years ago
  43. 4a5ee49 Hadoop TestSuite is completed and P2 pass test by Anbang Xu · 12 years ago
  44. 6981f1c adapt graph construction(hadoop) to VKmer by Anbang Xu · 12 years ago
  45. 9f949c4 MergeBubbleVertex half done by Anbang Xu · 12 years ago
  46. ac6a090 Fix BubbleAddVertex and pass test by Anbang Xu · 12 years ago
  47. aac7732 SimpleSplitRepeat is completed. An issue in graph building(hadoop): KmerList.appendList() doesn't check existed element by Anbang Xu · 12 years ago
  48. 0049eac refactor 'NaiveAlgorithm' to 'P1' and add test case for SplitRepeat by Anbang Xu · 12 years ago
  49. a5e97c7 p4 pass test by Anbang Xu · 12 years ago
  50. 4416d3c debugging p4 by Anbang Xu · 12 years ago
  51. dfa14d3 Fix NodeWritable and Finish contrail-graph Mapper/Reducer by Anbang Xu · 12 years ago genomix/velvet-graph-pregel
  52. f7a23e4 add Reducer and change PositionWritable to PositionListWritable in NodeWritable by Anbang Xu · 12 years ago
  53. 37cc20b hadoop graph building completion by Nan Zhang · 12 years ago
  54. 1181e3c modify the driver of velvet_graphbuilding by Nan Zhang · 12 years ago
  55. c9d802a Remove mac .DS_Store files and ignore them in the future. by Jake Biesinger · 12 years ago
  56. be015c7 add new data by hadoop · 12 years ago
  57. 13bdf01 delete the data by hadoop · 12 years ago
  58. a3a8958 new h2 modified by hadoop · 12 years ago
  59. 9832f24 delete actual by hadoop · 12 years ago
  60. 3c2876f make h1 test case pass by hadoop · 12 years ago
  61. 8a89876 hadoop pathmerge h1 algorithm by zhangnan2920214@gmail.com · 12 years ago
  62. cf793ad sequential file format by zhangnan2920214@gmail.com · 12 years ago
  63. f149d8f create svn dir by zhangnan2920214@gmail.com · 12 years ago
  64. 8ed1c1f reconstruct the code directory by jianfeng.jia@gmail.com · 13 years ago