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asterix-gerrit.ics.uci.edu / hyracks / 6c063e340f52fb1a97a1a135bd51aac9126e11bb / genomix / genomix-pregelix
  1. 6c063e3 Adapt new broadcastMergeMsg by Anbang Xu · 12 years ago
  2. 0b163b0 add boolean flag to broadcastKillself. may deley killSelf by Anbang Xu · 12 years ago
  3. d7fb5ef fixing P1 by Anbang Xu · 12 years ago
  4. cc1135b change addEdge to unionEdge in update by Anbang Xu · 12 years ago
  5. 4b21369 Fix TandemRepeatAndCycle bug by Anbang Xu · 12 years ago
  6. 3e91447 add test case for tandem repeats with multiple self-edges by Jake Biesinger · 12 years ago
  7. 5ecb66f seperate MessageFlag and State by Anbang Xu · 12 years ago
  8. 016d7ff Merge branch 'genomix/fullstack_genomix' of https://code.google.com/p/hyracks into genomix/fullstack_genomix by Anbang Xu · 12 years ago
  9. 7e8075b correct the input format for P2 by Anbang Xu · 12 years ago
  10. 8c9ed0f update driver to use P2's custom input and outputformat classes by Jake Biesinger · 12 years ago
  11. 016c6f4 add P2GraphInputFormat by Anbang Xu · 12 years ago
  12. 67ae8ad ADD more testcases for pathmerge by Anbang Xu · 12 years ago
  13. 63e5756 add lock to fakenode exist check by Anbang Xu · 12 years ago
  14. db7f854 clean up useless code by Anbang Xu · 12 years ago
  15. e830955 Merge branch 'anbangx/fullstack_genomix' into genomix/fullstack_genomix by Anbang Xu · 12 years ago
  16. 385dca4 Add sychnized lock to P2 to avoid duplicate fake nodes by Anbang Xu · 12 years ago
  17. 24f2ead add boolean flag to switch method between P2 and P4 by Anbang Xu · 12 years ago
  18. 2acd0b6 Fix one bug in P2/P4 by Anbang Xu · 12 years ago
  19. ae62ffe P2 pass all the tests except cycle by Anbang Xu · 12 years ago
  20. 027051e Add flag to notice apex to updateEdge by Anbang Xu · 12 years ago
  21. e3d4c1a Succeed to apply apexMap by Anbang Xu · 12 years ago
  22. 20a03b1 add kmerAndDirWritable by Anbang Xu · 12 years ago
  23. 6485489 Final Vertex Has correct edgelist by Anbang Xu · 12 years ago
  24. fad0703 going to use different rules to identify head by Anbang Xu · 12 years ago
  25. 9de0ad3 P2 pass single tests by Anbang Xu · 12 years ago
  26. 14d58f0 remove sendOutUpdate for head(P2 debug) by Anbang Xu · 12 years ago
  27. a7405c1 add should merge dir to state by Anbang Xu · 12 years ago
  28. 522b5ff Change update condition by Anbang Xu · 12 years ago
  29. 39b490b change updateEdges for processUpdate in pathmerge by Anbang Xu · 12 years ago
  30. d429aee revert to previous initVertex behavior by Jake Biesinger · 12 years ago
  31. 99d5629 Fix a bug in configure isFlip by Anbang Xu · 12 years ago
  32. 7da37db P2 internalKmer merge is completed in single path test by Anbang Xu · 12 years ago
  33. 3d9ecc5 p2 pass test 2,3 by Anbang Xu · 12 years ago
  34. 129879d add getVertexValue in P2value type by Anbang Xu · 12 years ago
  35. d5f760c add p2 graph input format, initiate prependMergeNode and appendMergeNode by Anbang Xu · 12 years ago
  36. 188c182 add processP2Merge to P2, P2 need a specific merge method by Anbang Xu · 12 years ago
  37. dd52a40 add getMessageType and getMergeNode to P2Message by Anbang Xu · 12 years ago
  38. d94f456 using prependNode and appendNode instead of LinkedList of mergeNodes by Anbang Xu · 12 years ago
  39. 1f85b15 add parameter(mergeDest) to configureMergeMsgToNeighber by Anbang Xu · 12 years ago
  40. 5983e8b add P2ValueWritable and P2MessageWritable to P2 by Anbang Xu · 12 years ago
  41. 065eec8 Clean up io folder by Anbang Xu · 12 years ago
  42. 362358f seperate io folder to io.common and io.message by Anbang Xu · 12 years ago
  43. 183807a add GraphCleanVertexInputFormat and GraphCleanVertexOutputFormat by Anbang Xu · 12 years ago
  44. eb09388 Adapt all clean patterns to use subclass V by Anbang Xu · 12 years ago
  45. e0dff62 add MessageType class to store msg type from head by Anbang Xu · 12 years ago
  46. 01c5e31 add subclass V to extend VertexValueWritable by Anbang Xu · 12 years ago
  47. d4b0267 refactor newState to state, there is no new state by Anbang Xu · 12 years ago
  48. d488e98 refactor MessageTypeFromHead to MessageType(P2) by Anbang Xu · 12 years ago
  49. 7616083 add only old head update edges by Anbang Xu · 12 years ago
  50. 9bbef65 make name more readable, refactor setPredecessorMsg to setPredecessorToMeDir by Anbang Xu · 12 years ago
  51. f5e5816 override sendUpdateMsg without parameter by Anbang Xu · 12 years ago
  52. 38db5c3 add linkedListWritable for P2 by Anbang Xu · 12 years ago
  53. 36fb2e2 Merge with main brnach by Anbang Xu · 12 years ago
  54. f3e0fc6 only set kmerLength during first superstep in basicGraphCleanVertex by Jake Biesinger · 12 years ago
  55. 76e2d7f don't read global state during compute iterations by Jake Biesinger · 12 years ago
  56. 8f6b461 refactor pregelix job creation by Anbang Xu · 12 years ago
  57. 5cda522 format test case by Anbang Xu · 12 years ago
  58. 2246913 Small change by Anbang Xu · 12 years ago
  59. a90fdd9 update pregelix vertexes to initialize static values by Jake Biesinger · 12 years ago
  60. a1b1e45 add simple command to each pattern by Anbang Xu · 12 years ago
  61. 86edb32 change command for scaffolding by Anbang Xu · 12 years ago
  62. 423fd16 Fix all synchronization issues by Anbang Xu · 12 years ago
  63. 81833a0 add scaffoldingAggregator by Anbang Xu · 12 years ago
  64. ee7dac3 Add synchronization to static variable by Anbang Xu · 12 years ago
  65. 7a47e8b Begin to debug P2 by Anbang Xu · 12 years ago
  66. 4da15b2 add many similar bubbles in one pattern test case and BubbleMerge pass test by Anbang Xu · 12 years ago
  67. a9c60b3 The aggregator for all the patterns are completed by Anbang Xu · 12 years ago
  68. 1aed014 add statistics counters to removeTip, pathMerge, removeBridge by Anbang Xu · 12 years ago
  69. 7f2208f PathMerge aggregator is completed by Anbang Xu · 12 years ago
  70. 52a279f Aggregator passes test by Anbang Xu · 12 years ago
  71. b1c7809 testing by Anbang Xu · 12 years ago
  72. f3a548c move aggregator output to test by Anbang Xu · 12 years ago
  73. ca28b1b add StatisticsCounterAggregator by Anbang Xu · 12 years ago
  74. 8c187a6 add RandonWalk test case by Anbang Xu · 12 years ago
  75. 88e9442 RemoveTip pass test by Anbang Xu · 12 years ago
  76. e71a964 Unroll Repeat pass test by Anbang Xu · 12 years ago
  77. 17b99f2 add stop haltNode in pathmerge and fix the bug Jake mentioned by Anbang Xu · 12 years ago
  78. 39cfc58 add synthetic test case by Jake Biesinger · 12 years ago
  79. 9dec13e remove generated genomix-pregel test case xml files by Jake Biesinger · 12 years ago
  80. c2aa582 Merge branch 'anbangx/backupMergingWithMaster' into genomix/fullstack_genomix by Jake Biesinger · 12 years ago
  81. 1e03787 Merge branch 'anbangx/backupMergingWithMaster_errorcase' into wbiesing/merge_fs_backup by Jake Biesinger · 12 years ago
  82. b19ba95 BubbleMerge pass complicated test cases by Anbang Xu · 12 years ago
  83. fc4fe25 add failing pathmerge testcase by Jake Biesinger · 12 years ago
  84. 32a956b fix one bug in path merge by Anbang Xu · 12 years ago
  85. 630586c add test case for synthetic data by Jake Biesinger · 12 years ago
  86. 5747845 Pregelix JobGenerator uses proper GenomixJobConf by Jake Biesinger · 12 years ago
  87. 96eab83 Merge branch 'anbangx/backupMergingWithMaster' into wbiesing/driver_backup_merge by Jake Biesinger · 12 years ago
  88. 26e7332 BubbleMerge test is almost finished except grid test case by Anbang Xu · 12 years ago
  89. ab0b235 test Rectangle by Anbang Xu · 12 years ago
  90. 85dfedf Add broadcaseKillselfAndNoticeToUpdateEdges and responseToDeadVertexAndUpdateEdges by Anbang Xu · 12 years ago
  91. c0b37b1 change bubble's pre-condition -- pathNode to anyNode by Anbang Xu · 12 years ago
  92. 97d97cd add bubble's addReadIDs by Jake Biesinger · 12 years ago
  93. e763a06 add complicated test case for BubbleMerge by Anbang Xu · 12 years ago
  94. 25a66b3 stop removing `expected` dir during clean (used for testing) by Jake Biesinger · 12 years ago
  95. 6ddc6cc testing BubbleMerge by Anbang Xu · 12 years ago
  96. 3aba0f0 SplitRepeat test is completed by Anbang Xu · 12 years ago
  97. 0ea5c92 Remove pregel dependence on hadoop and hyracks by Anbang Xu · 12 years ago
  98. 41ffd05 Merge with main branch by Anbang Xu · 12 years ago
  99. 4a9e45c Add testcases for SplitRepeat by Anbang Xu · 12 years ago
  100. 8270c5a Merge cycle to a single node in path merge. P4 test is completed by Anbang Xu · 12 years ago