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asterix-gerrit.ics.uci.edu / hyracks / 6b45971a020031dfd5258f0e23a6d1bee6f5a1af
  1. 6b45971 Fix H4, test templates by Jake Biesinger · 12 years ago
  2. de2a44b small adjustments to new node and position classes by Jake Biesinger · 12 years ago
  3. 970c74f move old key/value class to oldtype folder by Anbang Xu · 12 years ago
  4. 814540a remake new graph class - PositionWritable and NodeWritable by Anbang Xu · 12 years ago
  5. c71a2d3 removeBridge pass tests by Anbang Xu · 12 years ago Alpha Alpha-Graph-v2.0
  6. b1ccba9 p4 pass test by Anbang Xu · 12 years ago
  7. b3c4a2b removeTip pass all the tests by Anbang Xu · 12 years ago
  8. 9378de1 change directionFlag back by Anbang Xu · 12 years ago
  9. 3054c15 clear the code and fix messageFlag by Anbang Xu · 12 years ago
  10. 76b3277 Merge branch 'genomix/fullstack_genomix' of https://code.google.com/p/hyracks into genomix/fullstack_genomix by Anbang Xu · 12 years ago
  11. f947fb8 add test suite case for removetip/removebridge/pathmerge by Anbang Xu · 12 years ago
  12. 54f79fb add expected output for pathmerge (singleread) by Jake Biesinger · 12 years ago
  13. fb347c0 Add test cases as input graphs by Jake Biesinger · 12 years ago
  14. 8f719e0 Use BuildAllGraphs by Jake Biesinger · 12 years ago
  15. d8f5c89 Formulate test code by Anbang Xu · 12 years ago
  16. 48c0cec q by Jake Biesinger · 12 years ago
  17. b679646 Add more test cases for path merge by Jake Biesinger · 12 years ago
  18. ac4a3fb add script for simple random read generation by Jake Biesinger · 12 years ago
  19. 4bb565e use argparse for python plotting by Jake Biesinger · 12 years ago
  20. 67e67aa more test cases by Jake Biesinger · 12 years ago
  21. c408358 Add python script for visualizing graphs by Jacob Biesinger · 12 years ago
  22. 2049ae8 Merge branch 'genomix/fullstack_genomix' of https://code.google.com/p/hyracks into genomix/fullstack_genomix by Jacob Biesinger · 12 years ago
  23. 5c0184f Merge branch 'genomix/fullstack_genomix' of https://code.google.com/p/hyracks into genomix/fullstack_genomix by Jake Biesinger · 12 years ago
  24. 8eac65c Add data for few test cases by Jake Biesinger · 12 years ago
  25. 6a6f6bc Fix old merge leftovers by Jacob Biesinger · 12 years ago
  26. b5c8428 test cases by AnbangX · 12 years ago
  27. da3b802 Apply undirected graph algorithm in p2 by AnbangX · 12 years ago
  28. 0fd527e Merge branch 'genomix/fullstack_genomix' of https://code.google.com/p/hyracks into genomix/fullstack_genomix by Jake Biesinger · 12 years ago
  29. 8c8f194 test cases by Jake Biesinger · 12 years ago
  30. 5c31812 Add expected outputs for a few simple tests by Jake Biesinger · 12 years ago
  31. 15d0a8f Add sequences for simple test cases by Jake Biesinger · 12 years ago
  32. 8e4fbc3 test cases and fixes for H4 by Jake Biesinger · 12 years ago
  33. 1dea1ea PathNodeInitial uses 2 output bins instead of 3 by Jake Biesinger · 12 years ago
  34. d31a1b4 use local maximum (not min) for h4 by Jake Biesinger · 12 years ago
  35. 93e9c22 debugging p4 and fix random seed issue by AnbangX · 12 years ago
  36. 98dae20 H4 complete; fix probBeingHead by Jake Biesinger · 12 years ago
  37. 21ad290 Code review with Jake on H4 by AnbangX · 12 years ago
  38. b5e81d6 Merge branch 'anbangx/fullstack_genomix' into genomix/fullstack_genomix by AnbangX · 12 years ago
  39. e6d7e7a code review with Jake by AnbangX · 12 years ago
  40. 26d9f46 Fix nodewritable merge logic by Jake Biesinger · 12 years ago
  41. af826b9 gc optimize h4 reduce by Jake Biesinger · 12 years ago
  42. 64ae953 Add mergeInDir for kmers by Jake Biesinger · 12 years ago
  43. 3819c94 add stop condition for p2 by AnbangX · 12 years ago
  44. 74c645c send msg to bidirection in p2 by AnbangX · 12 years ago
  45. e1dbea7 add subclass BasicVertex and fixing p2 by AnbangX · 12 years ago
  46. d2e7e86 fix path merge flaws by AnbangX · 12 years ago genomix/one_direction v2.0
  47. 8f57673 Merge branch 'anbangx/fullstack_genomix' of https://code.google.com/p/hyracks into anbangx/fullstack_genomix by AnbangX · 12 years ago
  48. 2a9137c finish p4 by AnbangX · 12 years ago
  49. b7b66eb correct p4 by AnbangX · 12 years ago
  50. 730ed8a some updates by AnbangX · 12 years ago
  51. 342d65b add p4 for path merge by AnbangX · 12 years ago
  52. 7984e2b p3 path merge pass test by AnbangX · 12 years ago
  53. 46fc86e add test cases for removeBridge, removeTip and mergeBubble by AnbangX · 12 years ago
  54. db5d564 WIP H4 1 mapper + 2 reducers by Jake Biesinger · 12 years ago
  55. 974c47f refactor h4 update mapper to use update messages by Jake Biesinger · 12 years ago
  56. 5adaeec add merge and update utility functions by Jake Biesinger · 12 years ago
  57. 605a5e8 finish p4 by AnbangX · 12 years ago
  58. 3cda435 Remove tests using MRUnit (whose old API doesn't work with MultipleOutputs) by Jake Biesinger · 12 years ago
  59. 71ea5d2 Fix RFMerge and add tests by Jake Biesinger · 12 years ago
  60. fd9b4b1 correct p4 by AnbangX · 12 years ago
  61. 0d0e1fe some updates by AnbangX · 12 years ago
  62. 01ad7c2 Merge and fix FRMerge. RF still doesn't work. by Jake Biesinger · 12 years ago
  63. 244a3a8 Merge branch 'genomix/fullstack_genomix' into wbiesing/genomix/fullstack_genomix by Jake Biesinger · 12 years ago
  64. ce47851 add p4 for path merge by AnbangX · 12 years ago
  65. ab171ba refactor kmer mergeNext and mergePre -> mergeFF etc. untested :) by Jake Biesinger · 12 years ago
  66. 1f0b7d5 refactor MergePaths message types to use directions and message types by Jake Biesinger · 12 years ago
  67. a7216ac Add helper functions for mutating PositionListWritable's by Jake Biesinger · 12 years ago
  68. 3e70ffe PathNodeInitial updateable optimization by Jake Biesinger · 12 years ago
  69. 24e076f PathNodeInitial identifies nodes needing updates by Jake Biesinger · 12 years ago
  70. 0c08e56 p3 path merge pass test by AnbangX · 12 years ago
  71. 1920264 refactor: MessageFlag is now MergeMessageFlag by Jake Biesinger · 12 years ago
  72. 7c1d870 H4 driver works with multipleOutputs by Jake Biesinger · 12 years ago
  73. f20a7e7 Fix path separators in test cases by Jake Biesinger · 12 years ago
  74. b0e4fbc add test cases for removeBridge, removeTip and mergeBubble by AnbangX · 12 years ago
  75. 76cc619 simplify graphbuilding driver by Jake Biesinger · 12 years ago
  76. 86e8c3a simplify driver and test case for h4 graph building by Jake Biesinger · 12 years ago
  77. 87a1029 mergepaths uses multipleoutputs properly (prep for update code) by Jake Biesinger · 12 years ago
  78. c0e90ce simplify hadoop graphbuilding test case by Jake Biesinger · 12 years ago
  79. cc77cf7 add test cases for path merge and other data clean patterns by AnbangX · 12 years ago
  80. 2c41eb3 add remove in PositionListWritable and test by AnbangX · 12 years ago
  81. f60ef35 add test for graph build by AnbangX · 12 years ago
  82. 1e43ac4 Merge branch 'genomix/fullstack_genomix' of https://code.google.com/p/hyracks into jianfeng/genomix by Jianfeng Jia · 12 years ago
  83. acde177 add unmerged option in hyracks graph building by Jianfeng Jia · 12 years ago
  84. ec499a1 remove tips initial by Jake Biesinger · 12 years ago
  85. 82b237b Better testing for initial path merge by Jake Biesinger · 12 years ago
  86. 09cf1d1 facilitate better testing via more constructors and proper hashing/equals by Jake Biesinger · 12 years ago
  87. 90752e7 non-path nodes are pushed to "complete" output by Jake Biesinger · 12 years ago
  88. f608024 Merge branch 'anbangx/fullstack_genomix' of https://code.google.com/p/hyracks into anbangx/fullstack_genomix by AnbangX · 12 years ago
  89. 0d3ec57 update data clean 2013-06-06 by AnbangX · 12 years ago
  90. fd8c69a update 2013-6-4 by Anbang Xu · 12 years ago
  91. 0ae1c4c add data clean by AnbangX · 12 years ago
  92. 3a52d79 update data clean 2013-06-06 by AnbangX · 12 years ago
  93. 57971b6 path node works for complex starts by Jake Biesinger · 12 years ago
  94. bc7e15f Merge branch 'genomix/fullstack_genomix' into jianfeng/genomix by Jianfeng Jia · 12 years ago
  95. 0e69045 change iterator to for loop to save time. by Jianfeng Jia · 12 years ago
  96. e0fa424 Update H4 to new graph style by Jake Biesinger · 12 years ago
  97. 5932b3b fix test case paths by Jake Biesinger · 12 years ago
  98. bf8f525 Fix spelling by Jake Biesinger · 12 years ago
  99. 658d9f2 update 2013-6-4 by Anbang Xu · 12 years ago
  100. f367fd5 add data clean by AnbangX · 12 years ago