Gitiles
Code Review Sign In
asterix-gerrit.ics.uci.edu / hyracks / 6ad60bf1c58e15b5f37f22a57de184afc63f6aec
  1. 6ad60bf fix bug in readFields of KmerListWritable by Anbang Xu · 12 years ago
  2. 6981f1c adapt graph construction(hadoop) to VKmer by Anbang Xu · 12 years ago
  3. ad800e8 more cleanup of setByRead interface by Jake Biesinger · 12 years ago genomix/before-nodeid-graph-cleanup-Aug2013
  4. def02ee clean up interface for VKmer setByRead by Jake Biesinger · 12 years ago
  5. 1df93be Bugfix for Hadoop bug in VKmer and PositionList by Anbang Xu · 12 years ago
  6. b8626fd make GraphViz for test by Anbang Xu · 12 years ago
  7. 79c5ccf Merge branch 'wbiesing/genomix/VKmers' into genomix/fullstack_genomix by Jake Biesinger · 12 years ago
  8. 9f949c4 MergeBubbleVertex half done by Anbang Xu · 12 years ago
  9. 164cc80 add compare-by-coverage Comparator for NodeWritable by Jake Biesinger · 12 years ago
  10. 42036c1 add methods for node coverage merge/add; serialize coverage by Jake Biesinger · 12 years ago
  11. 07acebb Merge MergeBubbleMessageWritable to MessageWritable by Anbang Xu · 12 years ago
  12. ac6a090 Fix BubbleAddVertex and pass test by Anbang Xu · 12 years ago
  13. 6d8afff fix RemoveBridgeVertex and update for merge by Anbang Xu · 12 years ago
  14. 50e9f86 add conversions for Kmer <-> VKmer by Jake Biesinger · 12 years ago
  15. ec095b2 RemoveTipVertex pass test by Anbang Xu · 12 years ago
  16. 95c432c BridgeAddVertex pass test by Anbang Xu · 12 years ago
  17. 6f81b59 small update by Anbang Xu · 12 years ago
  18. 714d906 adapt BridgeAddVertex to new graph construction by Anbang Xu · 12 years ago
  19. d1075a0 adapt TipAddVertex to new graph construction by Anbang Xu · 12 years ago
  20. aac7732 SimpleSplitRepeat is completed. An issue in graph building(hadoop): KmerList.appendList() doesn't check existed element by Anbang Xu · 12 years ago
  21. ff02e22 Use VKmers in lists by Jake Biesinger · 12 years ago
  22. 1259632 refactor KmerList -> VKmerList by Jake Biesinger · 12 years ago
  23. 34d3d73 there is an issue in KmerListWritable and try to fix it by Anbang Xu · 12 years ago
  24. 5eaa799 Merge commit '94e075b5c3db9aa613ef61c2581430a143b17bc8' into nanzhang/hyracks_genomix by Nan Zhang · 12 years ago
  25. ceab4c1 Merge branch 'wbiesing/genomix/VKmers' into nanzhang/hyracks_genomix by Nan Zhang · 12 years ago
  26. 94e075b update for merge by Anbang Xu · 12 years ago
  27. 071ec27 modify the test parameter by Nan Zhang · 12 years ago
  28. 6ee7bdf fix HashSet in SplitRepeat by Anbang Xu · 12 years ago
  29. 0049eac refactor 'NaiveAlgorithm' to 'P1' and add test case for SplitRepeat by Anbang Xu · 12 years ago
  30. 8379d7f add the read checker for hyracks by Nan Zhang · 12 years ago
  31. d57d7e5 add CreatedVertex and ConnectedTable by Anbang Xu · 12 years ago
  32. e90120f modify the test for graph building by Nan Zhang · 12 years ago
  33. 37c6933 start coding SplitRepeat by Anbang Xu · 12 years ago
  34. 5a69e16 refactor graph building in hyracks using new genomix-data code by Nan Zhang · 12 years ago
  35. 5412086 refactor LogAlgorithm to P2 by Anbang Xu · 12 years ago
  36. 9db1ea8 merge MapReduceVertex to p2 and p2 is completed by Anbang Xu · 12 years ago
  37. f2507bf debugging for hyracks by Nan Zhang · 12 years ago
  38. 844d774 update the genomix-data by Nan Zhang · 12 years ago
  39. d94f5f9 refactor 'BasicPathMergeVertex' to 'BasicGraphCleanVertex', make it more general by Anbang Xu · 12 years ago
  40. 29ebdc8 Map/Reduce version in pregel is completed by Anbang Xu · 12 years ago
  41. b89e7dc allow references in all variable-length elements by keeping track of originally allowed space by Jake Biesinger · 12 years ago
  42. 0f06660 start dependency refactor by Jake Biesinger · 12 years ago
  43. 1e68c8f PositionListWritable passes tests by Jake Biesinger · 12 years ago
  44. b92f4e5 add copy-based byte array serialization for NodeWritable by Jake Biesinger · 12 years ago
  45. d907eb4 remove reference code for variable-length lists. We don't keep track of onwership of our data block by Jake Biesinger · 12 years ago
  46. 5dfa7b6 add MapReduceVertex for mapper/reducer in pregel by Anbang Xu · 12 years ago
  47. d6276e7 p2 pass test by Anbang Xu · 12 years ago
  48. 11b2760 Kmer factory uses VKmers by Jake Biesinger · 12 years ago
  49. bd58f1a .hashcode and .equals need to use storage with offsets; no more super methods. by Jake Biesinger · 12 years ago
  50. a9e482e update KmerListWritable to use fixed-length kmers by Jake Biesinger · 12 years ago
  51. 8cea7fd new graph job built by Nan Zhang · 12 years ago
  52. 5b40242 build graph building job for hyracks by Nan Zhang · 12 years ago
  53. 9ba730c no more inherited Kmers by Jake Biesinger · 12 years ago
  54. 5fb6805 use global, static length for fixed-length kmers by Jake Biesinger · 12 years ago
  55. 0f33ece use new genomix-data by Nan Zhang · 12 years ago
  56. be0a038 modify the jobGeBrujinGraph by Nan Zhang · 12 years ago
  57. f472a8b add the union list function on PostionListWritable by Nan Zhang · 12 years ago
  58. b8e0097 p2 pass test9 by Anbang Xu · 12 years ago
  59. fe8cb0f Merge branch 'genomix/fullstack_genomix' into nanzhang/hyracks_genomix by Nan Zhang · 12 years ago
  60. 7903077 Code review: refactor offset name by Anbang Xu · 12 years ago
  61. 3a0b4f2 fix key-value parser bug by Nan Zhang · 12 years ago
  62. 9e00650 p2 pass all the tests except 9 by Anbang Xu · 12 years ago
  63. 4693b43 Use Hashset for unionUpdate-ing with another KmerListWritable by Jake Biesinger · 12 years ago
  64. 71d06c2 test cases for merging across multiple edge types and kmer vs vkmer by Jake Biesinger · 12 years ago
  65. 4f80fd9 BUGFIX: mergeWithRF uses inefficient, MUCH simpler merge by Jake Biesinger · 12 years ago
  66. a660b8b merge aggregater completes by Nan Zhang · 12 years ago
  67. 78aaae4 switch VKmer to use a saner offset by Jake Biesinger · 12 years ago
  68. 9ce648a refactor KmerBytesWritable into Kmer and variable-length VKmer by Jake Biesinger · 12 years ago
  69. 2990977 debugging p2 by Anbang Xu · 12 years ago
  70. 9b2c8b6 job generate frame complete by Nan Zhang · 12 years ago
  71. 9691538 starting refactor of KmerList by Jake Biesinger · 12 years ago
  72. b811143 Refactor KmerBytesWritable to use internal length by Jake Biesinger · 12 years ago
  73. d8d3ccc local aggregator completed by Nan Zhang · 12 years ago
  74. 1307443 P2 pass test1,2,3,4 by Anbang Xu · 12 years ago
  75. 73ba093 delete the contrail package by Nan Zhang · 12 years ago
  76. ad0a538 complete the dataflow of hyracks by Nan Zhang · 12 years ago
  77. d253d8f fix mergeWithRFKmer by Anbang Xu · 12 years ago
  78. 67c5eef Merge branch 'genomix/fullstack_genomix' into nanzhang/hyracks_genomix by Nan Zhang · 12 years ago
  79. 4d50d8a Merge branch 'genomix/fullstack_genomix' into nanzhang/hyracks_genomix by Nan Zhang · 12 years ago
  80. a5e97c7 p4 pass test by Anbang Xu · 12 years ago
  81. 4416d3c debugging p4 by Anbang Xu · 12 years ago
  82. 311001a start to change graph clean part to 'contrail-graph' structure by Anbang Xu · 12 years ago
  83. dfa14d3 Fix NodeWritable and Finish contrail-graph Mapper/Reducer by Anbang Xu · 12 years ago genomix/velvet-graph-pregel
  84. 95138a4 hyracks contrail graph building partial completing by Nan Zhang · 12 years ago
  85. 84e385f Try to add globe kmerSize but fail in testing by Anbang Xu · 12 years ago
  86. bcf5a70 add hadoop test and keep both bin and txt by Anbang Xu · 12 years ago
  87. f7a23e4 add Reducer and change PositionWritable to PositionListWritable in NodeWritable by Anbang Xu · 12 years ago
  88. 0c644f4 Mapper passes test by Anbang Xu · 12 years ago
  89. 32bc798 finish Mapper and start Reducer by Anbang Xu · 12 years ago
  90. 4e9262f add GenomixMapper for new graph - 'contrail' by Anbang Xu · 12 years ago
  91. 3335bb6 hadoop for contrail graph by Anbang Xu · 12 years ago
  92. 08c7d2d change KmerListWritable and NodeWritable to new construction for new graph-'Kmer-Base system as key' by Anbang Xu · 12 years ago
  93. b14e7e6 Update for changing graph by Anbang Xu · 12 years ago
  94. 8dbe728 refactor 'size' to 'kmerByteSize' in KmerBytesWritable by Anbang Xu · 12 years ago
  95. f7fc945 refactor 'UniqueKey' to 'NodeId' by Anbang Xu · 12 years ago
  96. 6350b0f some changes in ParserFactory by Anbang Xu · 12 years ago
  97. 1a02870 add ReadsKeyValueParserFactory for new graph using for read HDFS by Anbang Xu · 12 years ago
  98. 871743c add IntermediateNodeWritable and KmerListWritable by Anbang Xu · 12 years ago
  99. c642eeb new graph driver by Anbang Xu · 12 years ago
  100. 0a8e068 add makeUUID to PositionWritable; use for test cases by Jake Biesinger · 12 years ago