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asterix-gerrit.ics.uci.edu / hyracks / 676a26850ff5e1f7623284b6cfcc269b8e705b14
  1. 676a268 stats are binned by whole value by Jake Biesinger · 12 years ago
  2. affc0b4 toString's on edgeList and positionList are sorted by Jake Biesinger · 12 years ago
  3. 65ee367 add STATS and DUMP_FASTA steps to the graph (run locally) by Jake Biesinger · 12 years ago
  4. 9fdf74d larger chunks for hadoop graphbuilding by Jake Biesinger · 12 years ago
  5. 5be5c46 fix coresPerMachine's default values by Jake Biesinger · 12 years ago
  6. 28cbeae save intermediate results by default (found a bug in pregelix-core?) by Jake Biesinger · 12 years ago
  7. 8b79c57 don't save intermediate results by default; add option to do so by Jake Biesinger · 12 years ago
  8. 67688c3 remove the genomix-pregelix testcase config files (again) by Jake Biesinger · 12 years ago
  9. f9e6e5f add hadoop building to the driver by Jake Biesinger · 12 years ago
  10. 17b99f2 add stop haltNode in pathmerge and fix the bug Jake mentioned by Anbang Xu · 12 years ago
  11. 39cfc58 add synthetic test case by Jake Biesinger · 12 years ago
  12. 9dec13e remove generated genomix-pregel test case xml files by Jake Biesinger · 12 years ago
  13. c2aa582 Merge branch 'anbangx/backupMergingWithMaster' into genomix/fullstack_genomix by Jake Biesinger · 12 years ago
  14. 1e03787 Merge branch 'anbangx/backupMergingWithMaster_errorcase' into wbiesing/merge_fs_backup by Jake Biesinger · 12 years ago
  15. b19ba95 BubbleMerge pass complicated test cases by Anbang Xu · 12 years ago
  16. fc4fe25 add failing pathmerge testcase by Jake Biesinger · 12 years ago
  17. 32a956b fix one bug in path merge by Anbang Xu · 12 years ago
  18. 630586c add test case for synthetic data by Jake Biesinger · 12 years ago
  19. d75565c add option for corespermachine in jobconf by Nan Zhang · 12 years ago
  20. d980562 small clean for genomix-hyracks code by Nan Zhang · 12 years ago
  21. 21c3906 genomix-driver copies results to text by Jake Biesinger · 12 years ago
  22. 5747845 Pregelix JobGenerator uses proper GenomixJobConf by Jake Biesinger · 12 years ago
  23. 96eab83 Merge branch 'anbangx/backupMergingWithMaster' into wbiesing/driver_backup_merge by Jake Biesinger · 12 years ago
  24. 26e7332 BubbleMerge test is almost finished except grid test case by Anbang Xu · 12 years ago
  25. 0d6afba remove minidfs cluster (so writing directly to lcoal disk now) by Jake Biesinger · 12 years ago
  26. 34c19fd refactoring local mode by Jake Biesinger · 12 years ago
  27. ab0b235 test Rectangle by Anbang Xu · 12 years ago
  28. febbaf1 add EdgeListWritable.addUnion(edge) by Jake Biesinger · 12 years ago
  29. 85dfedf Add broadcaseKillselfAndNoticeToUpdateEdges and responseToDeadVertexAndUpdateEdges by Anbang Xu · 12 years ago
  30. 2075152 add .tar.gz as an assembly target by Jake Biesinger · 12 years ago
  31. a332dbe copy conf directory into binary assembly output by Jake Biesinger · 12 years ago
  32. 4e22bc4 genomix driver takes a directory as local input by Jake Biesinger · 12 years ago
  33. 002533a genomix driver -ip and -runLocal are mutually exclusive by Jake Biesinger · 12 years ago
  34. 3e1eb90 change bubble merge "add" to use boolean `flip` by Jake Biesinger · 12 years ago
  35. c0b37b1 change bubble's pre-condition -- pathNode to anyNode by Anbang Xu · 12 years ago
  36. 97d97cd add bubble's addReadIDs by Jake Biesinger · 12 years ago
  37. e763a06 add complicated test case for BubbleMerge by Anbang Xu · 12 years ago
  38. 51a0502 separate genomix driver in/out to local/hdfs by Jake Biesinger · 12 years ago
  39. 34feeb2 add hyracks .properties and scripts to genomix-driver by Jake Biesinger · 12 years ago
  40. 251ecde harden hryacks scripts a bit by Jake Biesinger · 12 years ago
  41. 1e8c661 driver pom generates cc and nc scripts by Jake Biesinger · 12 years ago
  42. 9071ad4 Merge branch 'nanzhang/hyracks_genomix' into genomix/fullstack_genomix by Nan Zhang · 12 years ago
  43. fdf2c25 stable running with partition 4 by Nan Zhang · 12 years ago
  44. c7c196d remove patch.diff by Jake Biesinger · 12 years ago
  45. 25a66b3 stop removing `expected` dir during clean (used for testing) by Jake Biesinger · 12 years ago
  46. fad8c77 update genomix-driver pom to use auto-generated script by Jake Biesinger · 12 years ago
  47. 6ddc6cc testing BubbleMerge by Anbang Xu · 12 years ago
  48. 3aba0f0 SplitRepeat test is completed by Anbang Xu · 12 years ago
  49. 0ca485b Don't use l1 and l2 in VKmerBytesWritable by Anbang Xu · 12 years ago
  50. 5800f2b Merge branch 'master' into anbangx/backupMergingWithMaster by Anbang Xu · 12 years ago
  51. 0ea5c92 Remove pregel dependence on hadoop and hyracks by Anbang Xu · 12 years ago
  52. 41ffd05 Merge with main branch by Anbang Xu · 12 years ago
  53. 4a9e45c Add testcases for SplitRepeat by Anbang Xu · 12 years ago
  54. 6aae1de don't use root HDFS path by Jake Biesinger · 12 years ago
  55. 6d42a69 add medification on jobconf by Nan Zhang · 12 years ago
  56. 8270c5a Merge cycle to a single node in path merge. P4 test is completed by Anbang Xu · 12 years ago
  57. 4c7fca6 add hadoop conf into the genomix-hyracks scripts by Nan Zhang · 12 years ago
  58. d688b5a Add skip tandem repeat to pathmerge. TODO: detect cycle in pathmerge by Anbang Xu · 12 years ago
  59. 971c984 genomix driver actually uses cmdline args by Jake Biesinger · 12 years ago
  60. b2d89d1 remove junit and pmcommon dependencies by Jake Biesinger · 12 years ago
  61. 74dd489 fix appassembler for pregelix by Jake Biesinger · 12 years ago
  62. 3038537 appassembler for genomix driver by Jake Biesinger · 12 years ago
  63. adac3ef modify path for static test in driver by Jake Biesinger · 12 years ago
  64. 87b679f Merge branch 'anbangx/fullstack_genomix' into wbiesing/driver by Jake Biesinger · 12 years ago
  65. 2f3e3bb PathMerge pass test except TandemRepeat. TODO: skip TandemRepeat in pathmerge by Anbang Xu · 12 years ago
  66. 03434ff add hyracks-built graph as a pregelix test case by Jake Biesinger · 12 years ago
  67. 6c997b7 Fix kmer used in minicluster by Jake Biesinger · 12 years ago
  68. c9fe0a9 driver adapts to build output (InitialGraphInputFormat) by Jake Biesinger · 12 years ago
  69. 9c01d09 Fix mergeReadID RF and RR by Jake Biesinger · 12 years ago
  70. 569945a add RF/FR with/without head test for pathmerge by Anbang Xu · 12 years ago
  71. 1e86fe0 choose the unmerge_graphbuilding for genomix-driver by Nan Zhang · 12 years ago
  72. 7a75b07 add updateEdges for pathmerge. Issue: mergeWithStartreads by Anbang Xu · 12 years ago
  73. 9ac0dda Modify mergeWithKmer to mergeWithNode by Anbang Xu · 12 years ago
  74. 909de70 Merge branch 'master' into genomix/fullstack_genomix by Nan Zhang · 12 years ago
  75. 2e92709 remove bogus reference to com.sun.tools.javac.util.List by Jake Biesinger · 12 years ago
  76. 6fc84f1 Add additional merge info to pathmerge by Anbang Xu · 12 years ago
  77. d06c50f add testcase for pathmerge by Anbang Xu · 12 years ago
  78. fea8393 add unrollTandem to driver by Jake Biesinger · 12 years ago
  79. bb9901e re-remove nodes cleared out of Anbang's branch by Jake Biesinger · 12 years ago
  80. 5894562 GenomixDriver uses simpler pipeline builder by Jake Biesinger · 12 years ago
  81. b7d6d4f add convenience functions for new Jobs in genomix-pregelix operators by Jake Biesinger · 12 years ago
  82. d4fa74b Driver can run pregelix or Hyracks jobs locally by Jake Biesinger · 12 years ago
  83. 2accbdf remove constants from new pregelix code by Jake Biesinger · 12 years ago
  84. 58a483d remove old config files by Jake Biesinger · 12 years ago
  85. 06b3fa5 fix jobGenDebruijnGraph output format by Jake Biesinger · 12 years ago
  86. b1d8071 GenomixDriver: hryacks runs but can't find input by Jake Biesinger · 12 years ago
  87. 6eade1d use local test cluster by Jake Biesinger · 12 years ago
  88. 639c806 separate config from driver and pipeline setup by Jake Biesinger · 12 years ago
  89. 11c499b Add license header by Jake Biesinger · 12 years ago
  90. 1aad534 Update GenomixJobConf: must specify the kmerLength, extends JobConf by Jake Biesinger · 12 years ago
  91. 4f05864 Refactor configuration for all jobs into global GenomixJobConf by Jake Biesinger · 12 years ago
  92. 56e291f Merge branch 'anbangx/fullstack_genomix' into genomix/fullstack_genomix by Anbang Xu · 12 years ago
  93. ced394a Make pathmerge robost by Anbang Xu · 12 years ago
  94. ca15771 UnrollTandemRepeat is completed by Anbang Xu · 12 years ago
  95. b37b705 Add UnRollTandemRepeat. TODO: add the corresponding MSG and update edges by Anbang Xu · 12 years ago
  96. fc7d4b8 fix the positionWritable unionUpdate(), and add automatic test case by Nan Zhang · 12 years ago
  97. a81ddbc clean up the checkpointing control by buyingyi · 12 years ago
  98. 225a9dc Merge branch 'master' into yingyi/fullstack_fix by buyingyi · 12 years ago
  99. 15e90bb fix test jobs by buyingyi · 12 years ago
  100. 0a23941 print the full stack trace when failures propagate to pregelix driver by buyingyi · 12 years ago