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asterix-gerrit.ics.uci.edu / hyracks / 64bb87e0d0b990b2e002eae8a657e1f8263bef2d / genomix
  1. 64bb87e Add EdgeList.unionAdd(EdgeList) by Anbang Xu · 12 years ago
  2. eebeaf8 add isFlip to MessageFlag by Anbang Xu · 12 years ago
  3. 6744c68 Add updateMsg to P1, P1 need to deal with the case in which #pathnode is even by Anbang Xu · 12 years ago
  4. b8c534c Clean up some old P1 code by Anbang Xu · 12 years ago
  5. cca4428 Override the reduce function typically for P1 by Anbang Xu · 12 years ago
  6. 6c063e3 Adapt new broadcastMergeMsg by Anbang Xu · 12 years ago
  7. 0b163b0 add boolean flag to broadcastKillself. may deley killSelf by Anbang Xu · 12 years ago
  8. d7fb5ef fixing P1 by Anbang Xu · 12 years ago
  9. e1d8840 Merge branch 'genomix/fullstack_genomix' of https://code.google.com/p/hyracks into genomix/fullstack_genomix by Anbang Xu · 12 years ago
  10. cc1135b change addEdge to unionEdge in update by Anbang Xu · 12 years ago
  11. bd8ee91 correct randomdata.sh by Anbang Xu · 12 years ago
  12. ef688ee update randomdata script to log to a file and only keep error files by Jake Biesinger · 12 years ago
  13. b204a4a remove the io.sort factor in hadoop by Nan Zhang · 12 years ago
  14. 139234c fix the bug of hyracks_inputformat opts by Nan Zhang · 12 years ago
  15. 34eccad modify random data script to be more helpful in errors by Anbang Xu · 12 years ago
  16. 1c51f32 add script for creating random data by Anbang Xu · 12 years ago
  17. d309f00 add tandem repeat cases for hyracks graphbuilding by Jake Biesinger · 12 years ago
  18. 1280087 fixed hyracks graphbuild tests by Jake Biesinger · 12 years ago
  19. 4b21369 Fix TandemRepeatAndCycle bug by Anbang Xu · 12 years ago
  20. 3e91447 add test case for tandem repeats with multiple self-edges by Jake Biesinger · 12 years ago
  21. 5236ed2 remove default values for output format of hyracks graph build by Nan Zhang · 12 years ago
  22. c33e4b7 add option for hyracks driver to have text output by Nan Zhang · 12 years ago
  23. 5ecb66f seperate MessageFlag and State by Anbang Xu · 12 years ago
  24. fb6b585 forgot to import BspUtils :) by Jake Biesinger · 12 years ago
  25. 016d7ff Merge branch 'genomix/fullstack_genomix' of https://code.google.com/p/hyracks into genomix/fullstack_genomix by Anbang Xu · 12 years ago
  26. 7e8075b correct the input format for P2 by Anbang Xu · 12 years ago
  27. 8c9ed0f update driver to use P2's custom input and outputformat classes by Jake Biesinger · 12 years ago
  28. d877381 Merge branch 'anbangx/fullstack_genomix' into genomix/fullstack_genomix by Anbang Xu · 12 years ago
  29. 016c6f4 add P2GraphInputFormat by Anbang Xu · 12 years ago
  30. 3f9dc1d Merge branch 'nanzhang/hyracks_genomix' into genomix/fullstack_genomix by Nan Zhang · 12 years ago
  31. addf565 FramSize Test normal run by Nan Zhang · 12 years ago
  32. 67ae8ad ADD more testcases for pathmerge by Anbang Xu · 12 years ago
  33. 63e5756 add lock to fakenode exist check by Anbang Xu · 12 years ago
  34. db7f854 clean up useless code by Anbang Xu · 12 years ago
  35. e830955 Merge branch 'anbangx/fullstack_genomix' into genomix/fullstack_genomix by Anbang Xu · 12 years ago
  36. 385dca4 Add sychnized lock to P2 to avoid duplicate fake nodes by Anbang Xu · 12 years ago
  37. 24f2ead add boolean flag to switch method between P2 and P4 by Anbang Xu · 12 years ago
  38. 9a0ab2f add overall step timings by Jake Biesinger · 12 years ago
  39. b775a8c fix -runLocal! preglix and hyracks use different CC's, NC's and ports by Jake Biesinger · 12 years ago
  40. 2acd0b6 Fix one bug in P2/P4 by Anbang Xu · 12 years ago
  41. 943109c Merge branch 'nanzhang/hyracks_genomix' of https://code.google.com/p/hyracks into nanzhang/hyracks_genomix by Nan Zhang · 12 years ago
  42. d7ded9c small change on hyracks_genomix by Nan Zhang · 12 years ago
  43. 98edaf9 add sinlgelongread test set by Nan Zhang · 12 years ago
  44. b4a494e frameSize pressure test coding complete by Nan Zhang · 12 years ago
  45. b38f2fb add getclassloader() log for hyracks' driver by Nan Zhang · 12 years ago
  46. b01f8e8 change the stat package name in graph building of hyracks by Nan Zhang · 12 years ago
  47. 2e63796 add graphviz mac version for graph building of hyracks by Nan Zhang · 12 years ago
  48. 495440b add frame size pressure test package in driver by Nan Zhang · 12 years ago
  49. ae62ffe P2 pass all the tests except cycle by Anbang Xu · 12 years ago
  50. 027051e Add flag to notice apex to updateEdge by Anbang Xu · 12 years ago
  51. e3d4c1a Succeed to apply apexMap by Anbang Xu · 12 years ago
  52. 20a03b1 add kmerAndDirWritable by Anbang Xu · 12 years ago
  53. 4c5d5ba add logging.properties and fix compatibility issue with old bash versions by Nan Zhang · 12 years ago
  54. 6485489 Final Vertex Has correct edgelist by Anbang Xu · 12 years ago
  55. 55a9adc add test case for P2 by Anbang Xu · 12 years ago
  56. 9f9151c Merge remote-tracking branch 'origin/genomix/fullstack_genomix' into nanzhang/hyracks_genomix by Nan Zhang · 12 years ago
  57. 1c3f990 add sinlgelongread test set by Nan Zhang · 12 years ago
  58. 77bc37d frameSize pressure test coding complete by Nan Zhang · 12 years ago
  59. f8f20fa add getclassloader() log for hyracks' driver by Nan Zhang · 12 years ago
  60. 11cfa9f change the stat package name in graph building of hyracks by Nan Zhang · 12 years ago
  61. 772cebd add graphviz mac version for graph building of hyracks by Nan Zhang · 12 years ago
  62. fad0703 going to use different rules to identify head by Anbang Xu · 12 years ago
  63. 9de0ad3 P2 pass single tests by Anbang Xu · 12 years ago
  64. 14d58f0 remove sendOutUpdate for head(P2 debug) by Anbang Xu · 12 years ago
  65. a7405c1 add should merge dir to state by Anbang Xu · 12 years ago
  66. 522b5ff Change update condition by Anbang Xu · 12 years ago
  67. 39b490b change updateEdges for processUpdate in pathmerge by Anbang Xu · 12 years ago
  68. d429aee revert to previous initVertex behavior by Jake Biesinger · 12 years ago
  69. 3274eac try to have 2 local stes of CCs and NCs (-runLocal not working) by Jake Biesinger · 12 years ago
  70. 99d5629 Fix a bug in configure isFlip by Anbang Xu · 12 years ago
  71. d688f36 don't use a max number of readids on edges by Jake Biesinger · 12 years ago
  72. 9e32331 Add full-pipeline counters by Jake Biesinger · 12 years ago
  73. da9eeaf hadoop uses |IO_DIRS| * #slaves reducers by Jake Biesinger · 12 years ago
  74. a9f475d use $IO_DIRS, not -coresPerMachine for hyracks partitions + hadoop #reducers by Jake Biesinger · 12 years ago
  75. 6dfc4bb Hadoop graphbuild works! by Jake Biesinger · 12 years ago
  76. b0aed82 hadoop dist cache must be an absolute path by Jake Biesinger · 12 years ago
  77. 7294ef7 hadoop jar deployment fix by Jake Biesinger · 12 years ago
  78. 7da37db P2 internalKmer merge is completed in single path test by Anbang Xu · 12 years ago
  79. 3b25dd4 add frame size pressure test package in driver by Nan Zhang · 12 years ago
  80. 3d9ecc5 p2 pass test 2,3 by Anbang Xu · 12 years ago
  81. 129879d add getVertexValue in P2value type by Anbang Xu · 12 years ago
  82. d5f760c add p2 graph input format, initiate prependMergeNode and appendMergeNode by Anbang Xu · 12 years ago
  83. 188c182 add processP2Merge to P2, P2 need a specific merge method by Anbang Xu · 12 years ago
  84. dd52a40 add getMessageType and getMergeNode to P2Message by Anbang Xu · 12 years ago
  85. d94f456 using prependNode and appendNode instead of LinkedList of mergeNodes by Anbang Xu · 12 years ago
  86. 1f85b15 add parameter(mergeDest) to configureMergeMsgToNeighber by Anbang Xu · 12 years ago
  87. 5983e8b add P2ValueWritable and P2MessageWritable to P2 by Anbang Xu · 12 years ago
  88. 065eec8 Clean up io folder by Anbang Xu · 12 years ago
  89. 362358f seperate io folder to io.common and io.message by Anbang Xu · 12 years ago
  90. 183807a add GraphCleanVertexInputFormat and GraphCleanVertexOutputFormat by Anbang Xu · 12 years ago
  91. eb09388 Adapt all clean patterns to use subclass V by Anbang Xu · 12 years ago
  92. e0dff62 add MessageType class to store msg type from head by Anbang Xu · 12 years ago
  93. 01c5e31 add subclass V to extend VertexValueWritable by Anbang Xu · 12 years ago
  94. d4b0267 refactor newState to state, there is no new state by Anbang Xu · 12 years ago
  95. d488e98 refactor MessageTypeFromHead to MessageType(P2) by Anbang Xu · 12 years ago
  96. 7616083 add only old head update edges by Anbang Xu · 12 years ago
  97. 9bbef65 make name more readable, refactor setPredecessorMsg to setPredecessorToMeDir by Anbang Xu · 12 years ago
  98. f5e5816 override sendUpdateMsg without parameter by Anbang Xu · 12 years ago
  99. 38db5c3 add linkedListWritable for P2 by Anbang Xu · 12 years ago
  100. 36fb2e2 Merge with main brnach by Anbang Xu · 12 years ago