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asterix-gerrit.ics.uci.edu / hyracks / 5f57f5451f9eae4f9181020ca698e3990f8e7d94 / genomix
  1. 5f57f54 small change by Nan Zhang · 12 years ago
  2. 19b758e ervoer testUtils by Nan Zhang · 12 years ago
  3. 931fcc8 clean genomixMiniCluster by Nan Zhang · 12 years ago
  4. aeed6f0 delete the old driver by Nan Zhang · 12 years ago
  5. 852df2b complete the old code cleaning by Nan Zhang · 12 years ago
  6. 3e3144b cleanning continue by Nan Zhang · 12 years ago
  7. 7dc9400 clean the useless code for project by Nan Zhang · 12 years ago
  8. 3fc4fef Please enter the commit message for your changes. Lines starting by Nan Zhang · 12 years ago
  9. 8e8e99f Merge branch 'nanzhang/hyracks_genomix' into genomix/fullstack_genomix by Nan Zhang · 12 years ago
  10. 9cc4380 merging partial code to main branch by Nan Zhang · 12 years ago
  11. 96465fb Merge branch 'anbangx/fullstack_genomix' into genomix/fullstack_genomix by Anbang Xu · 12 years ago
  12. 6ad60bf fix bug in readFields of KmerListWritable by Anbang Xu · 12 years ago
  13. 9dc35e0 fix merge test case by Jake Biesinger · 12 years ago
  14. d235865 catch too-short kmers when trying to merge by Jake Biesinger · 12 years ago
  15. 078e20a catch attempts at merging empty kmers by Jake Biesinger · 12 years ago
  16. b072b75 Add edit distance computation for VKmers by Jake Biesinger · 12 years ago
  17. 6981f1c adapt graph construction(hadoop) to VKmer by Anbang Xu · 12 years ago
  18. ad800e8 more cleanup of setByRead interface by Jake Biesinger · 12 years ago genomix/before-nodeid-graph-cleanup-Aug2013
  19. def02ee clean up interface for VKmer setByRead by Jake Biesinger · 12 years ago
  20. 1df93be Bugfix for Hadoop bug in VKmer and PositionList by Anbang Xu · 12 years ago
  21. 6a7344b add 3 tips test cases for hyracks and add sequence file by Nan Zhang · 12 years ago
  22. b8626fd make GraphViz for test by Anbang Xu · 12 years ago
  23. 79c5ccf Merge branch 'wbiesing/genomix/VKmers' into genomix/fullstack_genomix by Jake Biesinger · 12 years ago
  24. 999f6ac add coverage for hyracks graph building by Nan Zhang · 12 years ago
  25. 07011c1 Merge commit '164cc8091571ad11261a91eed68e06d2e73ea490' into nanzhang/hyracks_genomix by Nan Zhang · 12 years ago
  26. 9f949c4 MergeBubbleVertex half done by Anbang Xu · 12 years ago
  27. 164cc80 add compare-by-coverage Comparator for NodeWritable by Jake Biesinger · 12 years ago
  28. 39f1cf1 Merge commit '07acebba2c4470834919a82092faec0c982411e5' into nanzhang/hyracks_genomix by Nan Zhang · 12 years ago
  29. 53da888 code clean by Nan Zhang · 12 years ago
  30. 42036c1 add methods for node coverage merge/add; serialize coverage by Jake Biesinger · 12 years ago
  31. 07acebb Merge MergeBubbleMessageWritable to MessageWritable by Anbang Xu · 12 years ago
  32. ac6a090 Fix BubbleAddVertex and pass test by Anbang Xu · 12 years ago
  33. 6ffdef2 add 3 SplitRepeat TestCases and fix the PositionListWitable: UnionUpdate HashSet by Nan Zhang · 12 years ago
  34. b01f330 Merge commit '50e9f8614b4124288f606d90c3417caa2b5f80de' into nanzhang/hyracks_genomix by Nan Zhang · 12 years ago
  35. 016df5f finish the debugging by Nan Zhang · 12 years ago
  36. 6d8afff fix RemoveBridgeVertex and update for merge by Anbang Xu · 12 years ago
  37. 50e9f86 add conversions for Kmer <-> VKmer by Jake Biesinger · 12 years ago
  38. ec095b2 RemoveTipVertex pass test by Anbang Xu · 12 years ago
  39. 95c432c BridgeAddVertex pass test by Anbang Xu · 12 years ago
  40. 6f81b59 small update by Anbang Xu · 12 years ago
  41. 714d906 adapt BridgeAddVertex to new graph construction by Anbang Xu · 12 years ago
  42. d1075a0 adapt TipAddVertex to new graph construction by Anbang Xu · 12 years ago
  43. aac7732 SimpleSplitRepeat is completed. An issue in graph building(hadoop): KmerList.appendList() doesn't check existed element by Anbang Xu · 12 years ago
  44. 0b9da1e Merge branch 'wbiesing/genomix/VKmers' into nanzhang/hyracks_genomix by Nan Zhang · 12 years ago
  45. c68e510 finish the debugging by Nan Zhang · 12 years ago
  46. ff02e22 Use VKmers in lists by Jake Biesinger · 12 years ago
  47. 1259632 refactor KmerList -> VKmerList by Jake Biesinger · 12 years ago
  48. 34d3d73 there is an issue in KmerListWritable and try to fix it by Anbang Xu · 12 years ago
  49. 5eaa799 Merge commit '94e075b5c3db9aa613ef61c2581430a143b17bc8' into nanzhang/hyracks_genomix by Nan Zhang · 12 years ago
  50. ceab4c1 Merge branch 'wbiesing/genomix/VKmers' into nanzhang/hyracks_genomix by Nan Zhang · 12 years ago
  51. 94e075b update for merge by Anbang Xu · 12 years ago
  52. 071ec27 modify the test parameter by Nan Zhang · 12 years ago
  53. 6ee7bdf fix HashSet in SplitRepeat by Anbang Xu · 12 years ago
  54. 0049eac refactor 'NaiveAlgorithm' to 'P1' and add test case for SplitRepeat by Anbang Xu · 12 years ago
  55. 8379d7f add the read checker for hyracks by Nan Zhang · 12 years ago
  56. d57d7e5 add CreatedVertex and ConnectedTable by Anbang Xu · 12 years ago
  57. e90120f modify the test for graph building by Nan Zhang · 12 years ago
  58. 37c6933 start coding SplitRepeat by Anbang Xu · 12 years ago
  59. 5a69e16 refactor graph building in hyracks using new genomix-data code by Nan Zhang · 12 years ago
  60. 5412086 refactor LogAlgorithm to P2 by Anbang Xu · 12 years ago
  61. 9db1ea8 merge MapReduceVertex to p2 and p2 is completed by Anbang Xu · 12 years ago
  62. f2507bf debugging for hyracks by Nan Zhang · 12 years ago
  63. 844d774 update the genomix-data by Nan Zhang · 12 years ago
  64. d94f5f9 refactor 'BasicPathMergeVertex' to 'BasicGraphCleanVertex', make it more general by Anbang Xu · 12 years ago
  65. 29ebdc8 Map/Reduce version in pregel is completed by Anbang Xu · 12 years ago
  66. b89e7dc allow references in all variable-length elements by keeping track of originally allowed space by Jake Biesinger · 12 years ago
  67. 0f06660 start dependency refactor by Jake Biesinger · 12 years ago
  68. 1e68c8f PositionListWritable passes tests by Jake Biesinger · 12 years ago
  69. b92f4e5 add copy-based byte array serialization for NodeWritable by Jake Biesinger · 12 years ago
  70. d907eb4 remove reference code for variable-length lists. We don't keep track of onwership of our data block by Jake Biesinger · 12 years ago
  71. 5dfa7b6 add MapReduceVertex for mapper/reducer in pregel by Anbang Xu · 12 years ago
  72. d6276e7 p2 pass test by Anbang Xu · 12 years ago
  73. 11b2760 Kmer factory uses VKmers by Jake Biesinger · 12 years ago
  74. bd58f1a .hashcode and .equals need to use storage with offsets; no more super methods. by Jake Biesinger · 12 years ago
  75. a9e482e update KmerListWritable to use fixed-length kmers by Jake Biesinger · 12 years ago
  76. 8cea7fd new graph job built by Nan Zhang · 12 years ago
  77. 5b40242 build graph building job for hyracks by Nan Zhang · 12 years ago
  78. 9ba730c no more inherited Kmers by Jake Biesinger · 12 years ago
  79. 5fb6805 use global, static length for fixed-length kmers by Jake Biesinger · 12 years ago
  80. 0f33ece use new genomix-data by Nan Zhang · 12 years ago
  81. be0a038 modify the jobGeBrujinGraph by Nan Zhang · 12 years ago
  82. f472a8b add the union list function on PostionListWritable by Nan Zhang · 12 years ago
  83. b8e0097 p2 pass test9 by Anbang Xu · 12 years ago
  84. fe8cb0f Merge branch 'genomix/fullstack_genomix' into nanzhang/hyracks_genomix by Nan Zhang · 12 years ago
  85. 7903077 Code review: refactor offset name by Anbang Xu · 12 years ago
  86. 3a0b4f2 fix key-value parser bug by Nan Zhang · 12 years ago
  87. 9e00650 p2 pass all the tests except 9 by Anbang Xu · 12 years ago
  88. 4693b43 Use Hashset for unionUpdate-ing with another KmerListWritable by Jake Biesinger · 12 years ago
  89. 71d06c2 test cases for merging across multiple edge types and kmer vs vkmer by Jake Biesinger · 12 years ago
  90. 4f80fd9 BUGFIX: mergeWithRF uses inefficient, MUCH simpler merge by Jake Biesinger · 12 years ago
  91. a660b8b merge aggregater completes by Nan Zhang · 12 years ago
  92. 78aaae4 switch VKmer to use a saner offset by Jake Biesinger · 12 years ago
  93. 9ce648a refactor KmerBytesWritable into Kmer and variable-length VKmer by Jake Biesinger · 12 years ago
  94. 2990977 debugging p2 by Anbang Xu · 12 years ago
  95. 9b2c8b6 job generate frame complete by Nan Zhang · 12 years ago
  96. 9691538 starting refactor of KmerList by Jake Biesinger · 12 years ago
  97. b811143 Refactor KmerBytesWritable to use internal length by Jake Biesinger · 12 years ago
  98. d8d3ccc local aggregator completed by Nan Zhang · 12 years ago
  99. 1307443 P2 pass test1,2,3,4 by Anbang Xu · 12 years ago
  100. 73ba093 delete the contrail package by Nan Zhang · 12 years ago