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asterix-gerrit.ics.uci.edu / hyracks / 5eaa799d0d57b46bc6a60099fdb5a3bbf8d18951 / genomix / genomix-pregelix / src / main / java / edu
  1. 5eaa799 Merge commit '94e075b5c3db9aa613ef61c2581430a143b17bc8' into nanzhang/hyracks_genomix by Nan Zhang · 12 years ago
  2. ceab4c1 Merge branch 'wbiesing/genomix/VKmers' into nanzhang/hyracks_genomix by Nan Zhang · 12 years ago
  3. 94e075b update for merge by Anbang Xu · 12 years ago
  4. 6ee7bdf fix HashSet in SplitRepeat by Anbang Xu · 12 years ago
  5. 0049eac refactor 'NaiveAlgorithm' to 'P1' and add test case for SplitRepeat by Anbang Xu · 12 years ago
  6. d57d7e5 add CreatedVertex and ConnectedTable by Anbang Xu · 12 years ago
  7. 37c6933 start coding SplitRepeat by Anbang Xu · 12 years ago
  8. 5412086 refactor LogAlgorithm to P2 by Anbang Xu · 12 years ago
  9. 9db1ea8 merge MapReduceVertex to p2 and p2 is completed by Anbang Xu · 12 years ago
  10. d94f5f9 refactor 'BasicPathMergeVertex' to 'BasicGraphCleanVertex', make it more general by Anbang Xu · 12 years ago
  11. 29ebdc8 Map/Reduce version in pregel is completed by Anbang Xu · 12 years ago
  12. 0f06660 start dependency refactor by Jake Biesinger · 12 years ago
  13. 5dfa7b6 add MapReduceVertex for mapper/reducer in pregel by Anbang Xu · 12 years ago
  14. d6276e7 p2 pass test by Anbang Xu · 12 years ago
  15. a9e482e update KmerListWritable to use fixed-length kmers by Jake Biesinger · 12 years ago
  16. b8e0097 p2 pass test9 by Anbang Xu · 12 years ago
  17. 9e00650 p2 pass all the tests except 9 by Anbang Xu · 12 years ago
  18. 2990977 debugging p2 by Anbang Xu · 12 years ago
  19. b811143 Refactor KmerBytesWritable to use internal length by Jake Biesinger · 12 years ago
  20. 1307443 P2 pass test1,2,3,4 by Anbang Xu · 12 years ago
  21. d253d8f fix mergeWithRFKmer by Anbang Xu · 12 years ago
  22. a5e97c7 p4 pass test by Anbang Xu · 12 years ago
  23. 4416d3c debugging p4 by Anbang Xu · 12 years ago
  24. 311001a start to change graph clean part to 'contrail-graph' structure by Anbang Xu · 12 years ago
  25. 4e9262f add GenomixMapper for new graph - 'contrail' by Anbang Xu · 12 years ago
  26. 8dbe728 refactor 'size' to 'kmerByteSize' in KmerBytesWritable by Anbang Xu · 12 years ago
  27. 970c74f move old key/value class to oldtype folder by Anbang Xu · 12 years ago
  28. c71a2d3 removeBridge pass tests by Anbang Xu · 12 years ago Alpha Alpha-Graph-v2.0
  29. b1ccba9 p4 pass test by Anbang Xu · 12 years ago
  30. b3c4a2b removeTip pass all the tests by Anbang Xu · 12 years ago
  31. 9378de1 change directionFlag back by Anbang Xu · 12 years ago
  32. 3054c15 clear the code and fix messageFlag by Anbang Xu · 12 years ago
  33. f947fb8 add test suite case for removetip/removebridge/pathmerge by Anbang Xu · 12 years ago
  34. da3b802 Apply undirected graph algorithm in p2 by AnbangX · 12 years ago
  35. 93e9c22 debugging p4 and fix random seed issue by AnbangX · 12 years ago
  36. e6d7e7a code review with Jake by AnbangX · 12 years ago
  37. 3819c94 add stop condition for p2 by AnbangX · 12 years ago
  38. 74c645c send msg to bidirection in p2 by AnbangX · 12 years ago
  39. e1dbea7 add subclass BasicVertex and fixing p2 by AnbangX · 12 years ago
  40. d2e7e86 fix path merge flaws by AnbangX · 12 years ago genomix/one_direction v2.0
  41. 2a9137c finish p4 by AnbangX · 12 years ago
  42. b7b66eb correct p4 by AnbangX · 12 years ago
  43. 730ed8a some updates by AnbangX · 12 years ago
  44. 342d65b add p4 for path merge by AnbangX · 12 years ago
  45. 7984e2b p3 path merge pass test by AnbangX · 12 years ago
  46. 46fc86e add test cases for removeBridge, removeTip and mergeBubble by AnbangX · 12 years ago
  47. cc77cf7 add test cases for path merge and other data clean patterns by AnbangX · 12 years ago
  48. 0d3ec57 update data clean 2013-06-06 by AnbangX · 12 years ago
  49. fd8c69a update 2013-6-4 by Anbang Xu · 12 years ago
  50. 0ae1c4c add data clean by AnbangX · 12 years ago
  51. 631482f add first small test case by AnbangX · 12 years ago
  52. 30f28d0 new code for bi-direction graph build by AnbangX · 12 years ago
  53. f5d6db9 change all input and output format to new version by AnbangX · 12 years ago
  54. a6e78ab do some changes to test git rebase by AnbangX · 12 years ago
  55. b19726a change code format in p3 by AnbangX · 12 years ago genomix/pre-velvet-graph
  56. 5af9dff finish debug in p3 by AnbangX · 12 years ago
  57. e04250d add p3 by AnbangX · 12 years ago
  58. e406bf5 add hyrack format by AnbangX · 12 years ago
  59. dff6815 add kmer factory by AnbangX · 12 years ago
  60. fb0c262 add global variable by AnbangX · 12 years ago
  61. 4b6126b use byte to check isCycle by AnbangX · 12 years ago
  62. 685b3cd add the iteraion option by AnbangX · 12 years ago
  63. cbdb971 delete extra class by AnbangX · 12 years ago
  64. 4b84334 format the code by AnbangX · 12 years ago
  65. 9a6b70b add incomingMsg and outgoingMsg and do some optimization after code review by AnbangX · 12 years ago
  66. 29973b0 add one condition by AnbangX · 12 years ago vault/fullstack_genomix
  67. 48f3635 delete some log by AnbangX · 12 years ago
  68. e4d4c6e add more log by AnbangX · 12 years ago
  69. 1d841e8 add debug code by AnbangX · 12 years ago
  70. 61955b4 add log to debug by AnbangX · 12 years ago
  71. 326f573 change outputformat for test by AnbangX · 12 years ago
  72. df7c076 add filter path class by AnbangX · 12 years ago
  73. cfc37ee update new code and test in ipubmed by AnbangX · 12 years ago
  74. 1669862 add test to filter specific path by AnbangX · 12 years ago
  75. 03eeda0 uniform the output format by AnbangX · 12 years ago
  76. eae1289 add testcase by AnbangX · 12 years ago
  77. ef51a0a reset maxIteration by AnbangX · 12 years ago
  78. 950d05e add more testcase by AnbangX · 12 years ago
  79. 02b2df5 add testcase by AnbangX · 12 years ago
  80. 92fc6a6 add path merge test case by AnbangX · 12 years ago
  81. f359983 change byte represent in all method by AnbangX · 12 years ago
  82. db5db2d use byte to represent state and messgeType by AnbangX · 12 years ago
  83. d9c2637 reduce some duplicate message communication and change int to byte by AnbangX · 12 years ago
  84. ee94af1 add iteration parameter by AnbangX · 12 years ago
  85. f11a472 add two step of log algorithm version by AnbangX · 12 years ago
  86. f60dab2 delete test code by AnbangX · 12 years ago
  87. b3ca05f delete unuse variable by AnbangX · 12 years ago
  88. de1b24d change ValueWritable.toString by AnbangX · 12 years ago
  89. b5d8e9b use deleteVertexId() instead of set state by AnbangX · 12 years ago
  90. 200fa1f use set state=DELETE instead of deleteVertexId() because deleteVertexId() causes exception by AnbangX · 12 years ago
  91. e72c849 fix the bug of naive and log algorithm by AnbangX · 12 years ago
  92. 7f09f7e change code architect and use VKmerBytesWritable instead of byte[] by AnbangX · 12 years ago
  93. 2bfbe83 add back old version of Kmer to support genomix-pregelix by JavierJia · 12 years ago
  94. d758539 the newest version of log algorthm for path merge and pass all the test cases by AnbangX · 12 years ago
  95. 70812cd fix some bugs of log algorithm and prepare to verify the correctness in big data by AnbangX · 12 years ago
  96. f01816c fix some bugs of log algorithm by AnbangX · 12 years ago
  97. 9d5de1e add num-iteration by anbangx · 12 years ago
  98. 952fac1 fix the bug of naive algorithm by anbangx · 12 years ago
  99. f27bac6 delete unuse class by anbangx · 12 years ago
  100. c07e482 delete unuse function by anbangx · 12 years ago