- 5dbc4e9 Call node.updateEdges directly by Anbang Xu · 12 years ago
- 7b773fd Change Num_TandemRepeat to Num_Cycles by Anbang Xu · 12 years ago
- b237604 Seperate function for each block in each iteration by Anbang Xu · 12 years ago
- 4273653 add ThreeNodesCycle, and it succeeds to pass test by Anbang Xu · 12 years ago
- 87dace3 Whenever detect the cycle, don't remove tandem repeats but DO stop merging by Anbang Xu · 12 years ago
- 065aaeb Clean up some feedbacks from code review by Anbang Xu · 12 years ago
- 05f3eff Move all the setCounter to the end of this iteration by Anbang Xu · 12 years ago
- 0e9ff97 Use incomingMsg as a parameter in processMerge() by Anbang Xu · 12 years ago
- 1b8fc71 Move the checking condition outside the loop by Anbang Xu · 12 years ago
- 63c251c Pass incomingMsg as parameter in processUpdate() by Anbang Xu · 12 years ago
- daabce7 Simplifying all the setSateAsMergeDir by Anbang Xu · 12 years ago
- 6d3e6da Simplifing all the sendUpdateMsg by Anbang Xu · 12 years ago
- 50e83b4 Combine ifFlipWithNext/Prev() to ifFlipWithNeighbor(boolean withPredecessor) and combine configureUpdateMsgFroPredecessor/Successor to sendUpdateMsg by Anbang Xu · 12 years ago
- 972050a DON'T NEED TO SEARCH for this edge when sendUpdateMsg, so change it to get dir directly by Anbang Xu · 12 years ago
- 89e09d0 Code review on P4 -- 2013.9.16 by Anbang Xu · 12 years ago
- d8f9809 Merge with debug branch, which has one testcase and add real randomSeed by Anbang Xu · 12 years ago
- 21c030c clean up the code by Anbang Xu · 12 years ago
- aeb6a54 Seperate set state's MergeDir and sendUpdateMsgToNeighbor by Anbang Xu · 12 years ago
- 2250399 Change head/halt flag to check the vertex internal structure by Anbang Xu · 12 years ago
- 4575fb7 Extend flag of headMergeDir from 1-bit to 2-bit by Anbang Xu · 12 years ago
- c079e59 Change state/message flag from byte to short by Anbang Xu · 12 years ago
- bdecb7f Prepare to change state by Anbang Xu · 12 years ago
- e53a2fb Try to use check condition in vertex state instead of give a isHalt state flag, but it occurs some errors by Anbang Xu · 12 years ago
- 84539c0 Add isUnMergeVertex() by Anbang Xu · 12 years ago
- eca45b7 Change should to can, make it more meaningful by Anbang Xu · 12 years ago
- 8efea88 Move isHaltNode() outside the function in initState() by Anbang Xu · 12 years ago
- 0f1f820 clean up code by Anbang Xu · 12 years ago
- 43b3f56 Keep only one isTandemRepeat() by Anbang Xu · 12 years ago
- a7e295c Make getCopyWithoutTandemRepeats() function by Anbang Xu · 12 years ago
- a20c75e Remove some unnecessary flag by Anbang Xu · 12 years ago
- a864eb2 Move extra logic(check if it is a valid head) to inside of the function by Anbang Xu · 12 years ago
- a3b5878 change curKmer/preKmer/nextKmer from deep copy to shallow copy by Anbang Xu · 12 years ago
- e929dfc don't need to create "randGenerator" every iteration by Anbang Xu · 12 years ago
- b0fa812 Combine into one loop inside setNextInfo/setPreInfo by Anbang Xu · 12 years ago
- 1f5cf71 Code review on P4 -- 2013.9.14 by Anbang Xu · 12 years ago
- d62271f oops... killed initVertex by Jake Biesinger · 12 years ago
- 03ba0f7 Add simple RF FR RF test case by Jake Biesinger · 12 years ago
- 1dc8655 make the xml jobs directory if it doesn't exist by Jake Biesinger · 12 years ago
- 7b57ae6 add RandomSeed by Anbang Xu · 12 years ago
- d745605 add by Anbang Xu · 12 years ago
- c981ca3 output error vertexId and vertexValue by Anbang Xu · 12 years ago
- 4d5eaf2 change ingoreMissing to true by Anbang Xu · 12 years ago
- 1211b25 remove default frame sizes in hyracks graphbuild by Jake Biesinger · 12 years ago
- 2de2366 use pregelix framesize by Jake Biesinger · 12 years ago
- d0afc7a add NCJAVA_OPTS to ssh script for startAllNCs.sh by Anbang Xu · 12 years ago
- f043e5d move log file to proper location by Anbang Xu · 12 years ago
- 7debc19 Merge branch 'anbangx/log' into genomix/fullstack_genomix by Anbang Xu · 12 years ago
- 5e03163 Add logging.properties to genomix-driver by Anbang Xu · 12 years ago
- 395ce71 Merge branch 'wbiesing/debug_hyracks_build' into genomix/fullstack_genomix by Nan Zhang · 12 years ago
- f30f2db remove max_readid_value in genomix-data, remove all hard-coding code for genomix-hyracks by Nan Zhang · 12 years ago
- 39f3125 MAKE genomix package no error by Anbang Xu · 12 years ago
- 440f1ff Merge branch 'anbangx/log' into genomix/fullstack_genomix by Anbang Xu · 12 years ago
- aaf3af2 Delete old LogFormatter by Anbang Xu · 12 years ago
- 30ecc2d Refactore FineOnlyFormatter to PathMergeFormatter by Anbang Xu · 12 years ago
- 1be8865 use LogUtil by Anbang Xu · 12 years ago
- b78d555 Don't use customer formatter anymore, everything uses java.util.Logger by Anbang Xu · 12 years ago
- d0cbe03 add beefier test case for EdgeListWritable by Jake Biesinger · 12 years ago
- 2eff046 use java.util.logging instead of apache commons logging by Jake Biesinger · 12 years ago
- 20a80e6 standardize logging across eclipse-test, eclipse-main, and maven by Jake Biesinger · 12 years ago
- 668f8a3 configure parameter of java.util.logger and prepare to test simple logger by Anbang Xu · 12 years ago
- a3e7a7c Add setAsCopy to VertexValueWritable and MessageWritable and format the output of Logging by Anbang Xu · 12 years ago
- b6e7014 Logging message in pathmerge by Anbang Xu · 12 years ago
- 2cde27a Add setAsCopy to MessageWritable by Anbang Xu · 12 years ago
- a49f0fd Add vertex.state to log by Anbang Xu · 12 years ago
- 4f916d6 add automatic clean log store by Anbang Xu · 12 years ago
- 56626a7 add loggingNode method() by Anbang Xu · 12 years ago
- 397aba9 Remove old state type by Anbang Xu · 12 years ago
- b8d4503 Delete old testcase by Anbang Xu · 12 years ago
- 14fb2b9 add random test et by Anbang Xu · 12 years ago
- e3ca759 add PathMergeLogFormatter by Anbang Xu · 12 years ago
- ebeba41 use ps in linux by Anbang Xu · 12 years ago
- d9933eb add getKmerNeighber by Anbang Xu · 12 years ago
- 4a0d101 add neighbor-finding python script by Jake Biesinger · 12 years ago
- 2ce9d38 Add some print statements for missing readids by Jake Biesinger · 12 years ago
- 3681903 Change sort to shuf by Anbang Xu · 12 years ago
- ab586f4 small changes by Anbang Xu · 12 years ago
- 6faadad add graph build automatical test script by Anbang Xu · 12 years ago
- df811e5 add SymmetryChecker by Anbang Xu · 12 years ago
- 6c79239 add AAA testcase by Anbang Xu · 12 years ago
- ac2e96e fix graphviz in mac OS by Anbang Xu · 12 years ago
- a3f2453 add OSvalidator for graphviz by Nan Zhang · 12 years ago
- fa54cda change in randomdata.sh, redirect error logs to another folder by Anbang Xu · 12 years ago
- e7afab6 add more details in randomData.sh by Anbang Xu · 12 years ago
- bedbf44 Merge branch 'anbangx/P1' into genomix/fullstack_genomix by Anbang Xu · 12 years ago
- 4c416ff Delete isFakeVertex() check by Anbang Xu · 12 years ago
- 3475209 Extract method name and make it meaningful by Anbang Xu · 12 years ago
- 8fa9d09 P1 pass all the test. P1 should be correct one and can be used to do comparison by Anbang Xu · 12 years ago
- 9a70cf3 Add dirMapper to mapKey in P1 by Anbang Xu · 12 years ago
- 11558a0 P1 pass test, except head_7(which has multiple updates) by Anbang Xu · 12 years ago
- 4bb7716 add testcase for P1 by Anbang Xu · 12 years ago
- 99ea1c4 Clean up code by Anbang Xu · 12 years ago
- 6a47868 Fix P1 by Anbang Xu · 12 years ago
- 5de7afd remove incompatible words for results checking tool by Nan Zhang · 12 years ago
- d17a2a2 remove NLineInputFormat for hadoop graph building by Nan Zhang · 12 years ago
- aa74657 P1 pass testcase in which #pathnode is even by Anbang Xu · 12 years ago
- f577a66 Exclude FakeVertex in ouput format by Anbang Xu · 12 years ago
- 1a7bc8b Fix a bug in sendUpdateMsg(). setMergeDir should be in the front of sendUpdateMsg by Anbang Xu · 12 years ago
- 64bb87e Add EdgeList.unionAdd(EdgeList) by Anbang Xu · 12 years ago
- eebeaf8 add isFlip to MessageFlag by Anbang Xu · 12 years ago
- 6744c68 Add updateMsg to P1, P1 need to deal with the case in which #pathnode is even by Anbang Xu · 12 years ago