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asterix-gerrit.ics.uci.edu / hyracks / 5d192ad9c0c72acbee1b821e48f1c95d8b7b5b1a / genomix
  1. 5d192ad finished genomix-hyracks end to end by JavierJia · 12 years ago
  2. e85c8a7 merge with hadoop code by JavierJia · 12 years ago
  3. ee1fa17 Merge branch 'genomix/velvet_graphbuilding' of https://code.google.com/p/hyracks into genomix/velvet_graphbuilding by JavierJia · 12 years ago
  4. fe1391a passed genomix-data test by JavierJia · 12 years ago
  5. e34200e create some writable based on Jianfeng's hyracks by Nan Zhang · 12 years ago
  6. ba0d0d8 clean up kmerWritable by JavierJia · 12 years ago
  7. d158252 finish design of NodeReferenc API by JavierJia · 12 years ago
  8. 4c33a7a finished framework by JavierJia · 12 years ago
  9. 136c411 finish mapKmerToReadID by JavierJia · 12 years ago
  10. 29973b0 add one condition by AnbangX · 12 years ago vault/fullstack_genomix
  11. 7b200be Merge branch 'fullstack_genomix' of https://code.google.com/p/hyracks into fullstack_genomix by AnbangX · 12 years ago
  12. 48f3635 delete some log by AnbangX · 12 years ago
  13. d061bf1 make hyracks test pass by JavierJia · 12 years ago
  14. e4d4c6e add more log by AnbangX · 12 years ago
  15. 1d841e8 add debug code by AnbangX · 12 years ago
  16. 61955b4 add log to debug by AnbangX · 12 years ago
  17. 326f573 change outputformat for test by AnbangX · 12 years ago
  18. df7c076 add filter path class by AnbangX · 12 years ago
  19. cfc37ee update new code and test in ipubmed by AnbangX · 12 years ago
  20. 1669862 add test to filter specific path by AnbangX · 12 years ago
  21. 03eeda0 uniform the output format by AnbangX · 12 years ago
  22. eae1289 add testcase by AnbangX · 12 years ago
  23. ef51a0a reset maxIteration by AnbangX · 12 years ago
  24. 950d05e add more testcase by AnbangX · 12 years ago
  25. 02b2df5 add testcase by AnbangX · 12 years ago
  26. a241656 add test utility by AnbangX · 12 years ago
  27. 92fc6a6 add path merge test case by AnbangX · 12 years ago
  28. f359983 change byte represent in all method by AnbangX · 12 years ago
  29. db5db2d use byte to represent state and messgeType by AnbangX · 12 years ago
  30. 07fb4bd Merge branch 'fullstack_genomix' of https://code.google.com/p/hyracks into fullstack_genomix by AnbangX · 12 years ago
  31. d9c2637 reduce some duplicate message communication and change int to byte by AnbangX · 12 years ago
  32. be015c7 add new data by hadoop · 12 years ago
  33. 13bdf01 delete the data by hadoop · 12 years ago
  34. daddc1e add a file by hadoop · 12 years ago
  35. 4441e04 delete the expected file by hadoop · 12 years ago
  36. dbc32ae adjust h1 code by hadoop · 12 years ago
  37. a71ef93 delete the endnodefile by hadoop · 12 years ago
  38. 42a210a change new name for hadoop program by hadoop · 12 years ago
  39. dfd15e1 change the test name by hadoop · 12 years ago
  40. ca08468 change name for files by hadoop · 12 years ago
  41. 7bdfe88 Merge branch 'fullstack_genomix' of https://code.google.com/p/hyracks into fullstack_genomix by hadoop · 12 years ago
  42. a3a8958 new h2 modified by hadoop · 12 years ago
  43. ee94af1 add iteration parameter by AnbangX · 12 years ago
  44. f11a472 add two step of log algorithm version by AnbangX · 12 years ago
  45. cf93766 fix some merge problems by JavierJia · 12 years ago
  46. fb266c9 Merge branch 'fullstack_genomix' of https://code.google.com/p/hyracks into fullstack_genomix by AnbangX · 12 years ago
  47. f60dab2 delete test code by AnbangX · 12 years ago
  48. 9e6792f bump versions in poms by buyingyi · 12 years ago
  49. 97ff7e7 delete actual files by hadoop · 12 years ago
  50. f695447 newist h2 code by hadoop · 12 years ago
  51. 9832f24 delete actual by hadoop · 12 years ago
  52. 20647ca Merge branch 'fullstack_genomix' of https://code.google.com/p/hyracks into fullstack_genomix by hadoop · 12 years ago
  53. 5f3fce8 deleted all actual file by hadoop · 12 years ago
  54. 72056c2 Merge branch 'fullstack_genomix' of https://code.google.com/p/hyracks into fullstack_genomix by AnbangX · 12 years ago
  55. b3ca05f delete unuse variable by AnbangX · 12 years ago
  56. 4803aea compatible with invalid read by Jianfeng Jia · 12 years ago
  57. de1b24d change ValueWritable.toString by AnbangX · 12 years ago
  58. c303a72 Merge branch 'fullstack_genomix' of https://code.google.com/p/hyracks into fullstack_genomix by hadoop · 12 years ago
  59. 9f12f4e Merge branch 'fullstack_genomix' of https://code.google.com/p/hyracks into fullstack_genomix by hadoop · 12 years ago
  60. 0495424 supprt zero-length kmer setting by JavierJia · 12 years ago
  61. c07f6bf new h2 by hadoop · 12 years ago
  62. e83982b add clearLeadBit into KmerOperation by JavierJia · 12 years ago
  63. 8824dde Merge branch 'fullstack_genomix' of https://code.google.com/p/hyracks into fullstack_genomix by hadoop · 12 years ago
  64. 6449b89 H2 by hadoop · 12 years ago
  65. 230f23a Merge branch 'fullstack_genomix' of https://code.google.com/p/hyracks into fullstack_genomix by JavierJia · 12 years ago
  66. 3c3f2b7 Change return value of shiftKmer from bitmap to genecode by JavierJia · 12 years ago
  67. 00f6336 h2h2 by hadoop · 12 years ago
  68. b5d8e9b use deleteVertexId() instead of set state by AnbangX · 12 years ago
  69. 200fa1f use set state=DELETE instead of deleteVertexId() because deleteVertexId() causes exception by AnbangX · 12 years ago
  70. e72c849 fix the bug of naive and log algorithm by AnbangX · 12 years ago
  71. 7f09f7e change code architect and use VKmerBytesWritable instead of byte[] by AnbangX · 12 years ago
  72. 734ff84 Merge branch 'fullstack_genomix' of https://code.google.com/p/hyracks into fullstack_genomix by hadoop · 12 years ago
  73. 99f0202 Please enter the commit message for your changes. Lines starting by hadoop · 12 years ago
  74. 4163db2 h1 changes by hadoop · 12 years ago
  75. bc974c4 change comparitor by JavierJia · 12 years ago
  76. 25e22f1 add protect to array index overflow by JavierJia · 12 years ago
  77. 483934a add getSubKmer function by JavierJia · 12 years ago
  78. 691aa67 Merge branch 'fullstack_genomix' of https://code.google.com/p/hyracks into fullstack_genomix by hadoop · 12 years ago
  79. 6050d12 export JAVA_HOME in script while by JavierJia · 12 years ago
  80. 5393870 change script of starting hyracks by jianfeng · 12 years ago
  81. 0076326 add default empty constructor for hadoop version by JavierJia · 12 years ago
  82. 0a7f115 make genomix-hyracks pass the test by JavierJia · 12 years ago
  83. 2bfbe83 add back old version of Kmer to support genomix-pregelix by JavierJia · 12 years ago
  84. a5214c5 Merge branch 'fullstack_genomix' of https://code.google.com/p/hyracks into fullstack_genomix by JavierJia · 12 years ago
  85. 0c37dd0 make genomix-hadoop genomix-hyracks compilable by JavierJia · 12 years ago
  86. d758539 the newest version of log algorthm for path merge and pass all the test cases by AnbangX · 12 years ago
  87. a3e2da9 Merge branch 'fullstack_genomix' of https://code.google.com/p/hyracks into fullstack_genomix by JavierJia · 12 years ago
  88. be165dd split Kmer into fixsize Kmer and variablesize VKmer by JavierJia · 12 years ago
  89. 3c2876f make h1 test case pass by hadoop · 12 years ago
  90. 70812cd fix some bugs of log algorithm and prepare to verify the correctness in big data by AnbangX · 12 years ago
  91. 48a21c3 make genomix-data test passed by JavierJia · 12 years ago
  92. f01816c fix some bugs of log algorithm by AnbangX · 12 years ago
  93. 35ea519 Merge branch 'fullstack_genomix' of https://code.google.com/p/hyracks into fullstack_genomix by JavierJia · 12 years ago
  94. 3e9c53e make genomix-hyracks test compilable by JavierJia · 12 years ago
  95. 9d5de1e add num-iteration by anbangx · 12 years ago
  96. 3649da5 make genomix compile by buyingyi · 12 years ago
  97. 3c5bd0a make genomix compile with merged hyracks by buyingyi · 12 years ago
  98. 6dbd752 merge fullstack_dynamic_deployment by buyingyi · 12 years ago
  99. 952fac1 fix the bug of naive algorithm by anbangx · 12 years ago
  100. f27bac6 delete unuse class by anbangx · 12 years ago