- 25a66b3 stop removing `expected` dir during clean (used for testing) by Jake Biesinger · 12 years ago
- 41ffd05 Merge with main branch by Anbang Xu · 12 years ago
- 4a9e45c Add testcases for SplitRepeat by Anbang Xu · 12 years ago
- 8270c5a Merge cycle to a single node in path merge. P4 test is completed by Anbang Xu · 12 years ago
- d688b5a Add skip tandem repeat to pathmerge. TODO: detect cycle in pathmerge by Anbang Xu · 12 years ago
- 74dd489 fix appassembler for pregelix by Jake Biesinger · 12 years ago
- adac3ef modify path for static test in driver by Jake Biesinger · 12 years ago
- 87b679f Merge branch 'anbangx/fullstack_genomix' into wbiesing/driver by Jake Biesinger · 12 years ago
- 2f3e3bb PathMerge pass test except TandemRepeat. TODO: skip TandemRepeat in pathmerge by Anbang Xu · 12 years ago
- 03434ff add hyracks-built graph as a pregelix test case by Jake Biesinger · 12 years ago
- 569945a add RF/FR with/without head test for pathmerge by Anbang Xu · 12 years ago
- 7a75b07 add updateEdges for pathmerge. Issue: mergeWithStartreads by Anbang Xu · 12 years ago
- 9ac0dda Modify mergeWithKmer to mergeWithNode by Anbang Xu · 12 years ago
- 6fc84f1 Add additional merge info to pathmerge by Anbang Xu · 12 years ago
- d06c50f add testcase for pathmerge by Anbang Xu · 12 years ago
- fea8393 add unrollTandem to driver by Jake Biesinger · 12 years ago
- bb9901e re-remove nodes cleared out of Anbang's branch by Jake Biesinger · 12 years ago
- b7d6d4f add convenience functions for new Jobs in genomix-pregelix operators by Jake Biesinger · 12 years ago
- 2accbdf remove constants from new pregelix code by Jake Biesinger · 12 years ago
- 58a483d remove old config files by Jake Biesinger · 12 years ago
- 6eade1d use local test cluster by Jake Biesinger · 12 years ago
- 639c806 separate config from driver and pipeline setup by Jake Biesinger · 12 years ago
- 4f05864 Refactor configuration for all jobs into global GenomixJobConf by Jake Biesinger · 12 years ago
- ced394a Make pathmerge robost by Anbang Xu · 12 years ago
- ca15771 UnrollTandemRepeat is completed by Anbang Xu · 12 years ago
- b37b705 Add UnRollTandemRepeat. TODO: add the corresponding MSG and update edges by Anbang Xu · 12 years ago
- 6efa434 Completed P2 debugging by Anbang Xu · 12 years ago
- a3c0538 Clean up P2 code and prepare to deep debug it by Anbang Xu · 12 years ago
- feec5be Fix BubbleMerge by Anbang Xu · 12 years ago
- 5e01f76 Adapt RemoveLowCoverageVertex to new graph structure. Finally, all the patterns are adapted to new graph by Anbang Xu · 12 years ago
- e7856d5 Adapt ScaffoldingVertex to new graph structure by Anbang Xu · 12 years ago
- c970d65 Adapt BTSTraverseVertex to new graph structure by Anbang Xu · 12 years ago
- 6212780 BTS almost done and wait for EdgeListWritable[dir].getReadIds(Key key) by Anbang Xu · 12 years ago
- 0217e7e Adapt SplitRepeatVertex to new graph structure. TODO: test AdjSplitRepeat by Anbang Xu · 12 years ago
- 37a8489 Adapt MergeBubbleVertex to new graph structure. TODO: check if bubble flip and merge all metadata except kmer by Anbang Xu · 12 years ago
- c69d141 Add node to BubbleMessage by Anbang Xu · 12 years ago
- 14de2c6 save current state by Anbang Xu · 12 years ago
- 977a413 Adapt BridgeAddVertex and BridgeRemoveVertex to new graph structure by Anbang Xu · 12 years ago
- 4370b2b adapt TipAddVertex and TipRemoveVertex to new graph structure by Anbang Xu · 12 years ago
- 112cdf7 Adapt MapReduceVertex and P4 to new graph structure by Anbang Xu · 12 years ago
- e7885ee Pregel TestSuite is completed by Anbang Xu · 12 years ago
- 0e037c1 Prepare to clean up pregel testSuite by Anbang Xu · 12 years ago
- 6f88379 save current state and prepare to clean up hadoop test result by Anbang Xu · 12 years ago
- 5d431a1 temporary save modified state by Anbang Xu · 12 years ago
- b02033e BasicPathMergeVertex is completed by Anbang Xu · 12 years ago
- 0d72095 Make generic message class for all patterns by Anbang Xu · 12 years ago
- a5a1e63 Make basic msg class: MessageWritable and subclasses: PathMergeMessage, BubbleMergeMessage, BFSMessage by Anbang Xu · 12 years ago
- 6bdf197 add EdgeList[dir].getKeys() by Anbang Xu · 12 years ago
- 58875bf delete SelfPath.txt~ by Anbang Xu · 12 years ago
- c448987 refactoring edgelists; still some to do by Jake Biesinger · 12 years ago
- 14df82f Merge branch 'nanzhang/hyracks_genomix' into genomix/fullstack_genomix by Nan Zhang · 12 years ago
- b1c9c7d P1ForPathMergeVertex is completed, but one issue about even length and message from both size can't be solve by Anbang Xu · 12 years ago
- 67c7e22 debuging SplitRepeatVertex by Anbang Xu · 12 years ago
- bb8e581 Complete NaiveBFSTraverse and make more test cases by Anbang Xu · 12 years ago
- d282e07 argumented graph building pass test successfully by Nan Zhang · 12 years ago
- 1de8032 Half done BFSTraverseVertex Framework by Anbang Xu · 12 years ago
- f010494 adapt new NodeWritable and extends it in VertexValue by Anbang Xu · 12 years ago
- 361916b save current state by Anbang Xu · 12 years ago
- 52bda5c add new graph result to PathMergeTestSet by Anbang Xu · 12 years ago
- 813f143 adapt pregel package to new graph by Anbang Xu · 12 years ago
- 399fc4a NodeWritable: refactor getListFromDir to getEdgeList by Jake Biesinger · 12 years ago
- 211d79c use direction flag as only public interface for nodewritable edges and threads by Jake Biesinger · 12 years ago
- 2065960 NodeWritable: Remove nodeIdList, refactor edges, add threads, add start/end reads by Jake Biesinger · 12 years ago
- 580f6cd add vertex.activate() to notice update and change DirectionFlag to 2 bits by Anbang Xu · 12 years ago
- 62a61f6 NodeWritable: refactor getListFromDir to getEdgeList by Jake Biesinger · 12 years ago
- 64f07c9 use direction flag as only public interface for nodewritable edges and threads by Jake Biesinger · 12 years ago
- 47fc29c NodeWritable: Remove nodeIdList, refactor edges, add threads, add start/end reads by Jake Biesinger · 12 years ago
- 8ded1a3 Clean genomix package and complete mergeing with Master by Anbang Xu · 12 years ago
- c5e5abc remove dependency on hyracks-hdfs-core test-jar by Jake Biesinger · 12 years ago
- 05fc10d clean pregel package for latest master by Anbang Xu · 12 years ago
- dfd2e50 fix genomix pom.xml's to use 0.2.10-SNAPSHOT by Jake Biesinger · 12 years ago
- e0b35ce Merge branch 'anbangx/fullstack_genomix' into genomix/fullstack_genomix by Anbang Xu · 12 years ago
- be39f91 Add AverageCoverage to graph construction(hadoop) and make graphviz more pretty by Anbang Xu · 12 years ago
- ac6b1a6 RemoveBridge pass test and add RemoveLowCoverage and Scaffolding by Anbang Xu · 12 years ago
- 4a5ee49 Hadoop TestSuite is completed and P2 pass test by Anbang Xu · 12 years ago
- 18c032a make TestSuite for graph building(hadoop) by Anbang Xu · 12 years ago
- 61bfb93 add computeSimilarity and mergeAverageCoverage to MergeBubbleVertex by Anbang Xu · 12 years ago
- 4ac4a5b Merge branch 'genomix/fullstack_genomix' of https://code.google.com/p/hyracks into genomix/fullstack_genomix by Nan Zhang · 12 years ago
- 3744b98 fix the pom.xml for genomix-hadoop by Nan Zhang · 12 years ago
- cb4391e clean pregel package for build by Anbang Xu · 12 years ago
- c4961c9 complete MergeBubbleVertex & wait for compute fracSimilarity by Anbang Xu · 12 years ago
- 3986b17 debugging BubbleMergeVertex by Anbang Xu · 12 years ago
- 3e3144b cleanning continue by Nan Zhang · 12 years ago
- 8e8e99f Merge branch 'nanzhang/hyracks_genomix' into genomix/fullstack_genomix by Nan Zhang · 12 years ago
- 6ad60bf fix bug in readFields of KmerListWritable by Anbang Xu · 12 years ago
- 6981f1c adapt graph construction(hadoop) to VKmer by Anbang Xu · 12 years ago
- ad800e8 more cleanup of setByRead interface by Jake Biesinger · 12 years ago genomix/before-nodeid-graph-cleanup-Aug2013
- b8626fd make GraphViz for test by Anbang Xu · 12 years ago
- 79c5ccf Merge branch 'wbiesing/genomix/VKmers' into genomix/fullstack_genomix by Jake Biesinger · 12 years ago
- 9f949c4 MergeBubbleVertex half done by Anbang Xu · 12 years ago
- 39f1cf1 Merge commit '07acebba2c4470834919a82092faec0c982411e5' into nanzhang/hyracks_genomix by Nan Zhang · 12 years ago
- 07acebb Merge MergeBubbleMessageWritable to MessageWritable by Anbang Xu · 12 years ago
- ac6a090 Fix BubbleAddVertex and pass test by Anbang Xu · 12 years ago
- 6d8afff fix RemoveBridgeVertex and update for merge by Anbang Xu · 12 years ago
- ec095b2 RemoveTipVertex pass test by Anbang Xu · 12 years ago
- 95c432c BridgeAddVertex pass test by Anbang Xu · 12 years ago
- 6f81b59 small update by Anbang Xu · 12 years ago
- 714d906 adapt BridgeAddVertex to new graph construction by Anbang Xu · 12 years ago
- d1075a0 adapt TipAddVertex to new graph construction by Anbang Xu · 12 years ago
- aac7732 SimpleSplitRepeat is completed. An issue in graph building(hadoop): KmerList.appendList() doesn't check existed element by Anbang Xu · 12 years ago