- 50e83b4 Combine ifFlipWithNext/Prev() to ifFlipWithNeighbor(boolean withPredecessor) and combine configureUpdateMsgFroPredecessor/Successor to sendUpdateMsg by Anbang Xu · 12 years ago
- 972050a DON'T NEED TO SEARCH for this edge when sendUpdateMsg, so change it to get dir directly by Anbang Xu · 12 years ago
- 89e09d0 Code review on P4 -- 2013.9.16 by Anbang Xu · 12 years ago
- d8f9809 Merge with debug branch, which has one testcase and add real randomSeed by Anbang Xu · 12 years ago
- 21c030c clean up the code by Anbang Xu · 12 years ago
- aeb6a54 Seperate set state's MergeDir and sendUpdateMsgToNeighbor by Anbang Xu · 12 years ago
- 2250399 Change head/halt flag to check the vertex internal structure by Anbang Xu · 12 years ago
- 4575fb7 Extend flag of headMergeDir from 1-bit to 2-bit by Anbang Xu · 12 years ago
- c079e59 Change state/message flag from byte to short by Anbang Xu · 12 years ago
- bdecb7f Prepare to change state by Anbang Xu · 12 years ago
- e53a2fb Try to use check condition in vertex state instead of give a isHalt state flag, but it occurs some errors by Anbang Xu · 12 years ago
- 84539c0 Add isUnMergeVertex() by Anbang Xu · 12 years ago
- eca45b7 Change should to can, make it more meaningful by Anbang Xu · 12 years ago
- 8efea88 Move isHaltNode() outside the function in initState() by Anbang Xu · 12 years ago
- 0f1f820 clean up code by Anbang Xu · 12 years ago
- 43b3f56 Keep only one isTandemRepeat() by Anbang Xu · 12 years ago
- a7e295c Make getCopyWithoutTandemRepeats() function by Anbang Xu · 12 years ago
- a20c75e Remove some unnecessary flag by Anbang Xu · 12 years ago
- a864eb2 Move extra logic(check if it is a valid head) to inside of the function by Anbang Xu · 12 years ago
- a3b5878 change curKmer/preKmer/nextKmer from deep copy to shallow copy by Anbang Xu · 12 years ago
- e929dfc don't need to create "randGenerator" every iteration by Anbang Xu · 12 years ago
- b0fa812 Combine into one loop inside setNextInfo/setPreInfo by Anbang Xu · 12 years ago
- 1f5cf71 Code review on P4 -- 2013.9.14 by Anbang Xu · 12 years ago
- d62271f oops... killed initVertex by Jake Biesinger · 12 years ago
- 03ba0f7 Add simple RF FR RF test case by Jake Biesinger · 12 years ago
- 1dc8655 make the xml jobs directory if it doesn't exist by Jake Biesinger · 12 years ago
- 7b57ae6 add RandomSeed by Anbang Xu · 12 years ago
- d745605 add by Anbang Xu · 12 years ago
- c981ca3 output error vertexId and vertexValue by Anbang Xu · 12 years ago
- 5e03163 Add logging.properties to genomix-driver by Anbang Xu · 12 years ago
- aaf3af2 Delete old LogFormatter by Anbang Xu · 12 years ago
- 30ecc2d Refactore FineOnlyFormatter to PathMergeFormatter by Anbang Xu · 12 years ago
- 1be8865 use LogUtil by Anbang Xu · 12 years ago
- b78d555 Don't use customer formatter anymore, everything uses java.util.Logger by Anbang Xu · 12 years ago
- 20a80e6 standardize logging across eclipse-test, eclipse-main, and maven by Jake Biesinger · 12 years ago
- 668f8a3 configure parameter of java.util.logger and prepare to test simple logger by Anbang Xu · 12 years ago
- a3e7a7c Add setAsCopy to VertexValueWritable and MessageWritable and format the output of Logging by Anbang Xu · 12 years ago
- b6e7014 Logging message in pathmerge by Anbang Xu · 12 years ago
- 2cde27a Add setAsCopy to MessageWritable by Anbang Xu · 12 years ago
- a49f0fd Add vertex.state to log by Anbang Xu · 12 years ago
- 4f916d6 add automatic clean log store by Anbang Xu · 12 years ago
- 56626a7 add loggingNode method() by Anbang Xu · 12 years ago
- 397aba9 Remove old state type by Anbang Xu · 12 years ago
- e3ca759 add PathMergeLogFormatter by Anbang Xu · 12 years ago
- ebeba41 use ps in linux by Anbang Xu · 12 years ago
- df811e5 add SymmetryChecker by Anbang Xu · 12 years ago
- 6c79239 add AAA testcase by Anbang Xu · 12 years ago
- ac2e96e fix graphviz in mac OS by Anbang Xu · 12 years ago
- 4c416ff Delete isFakeVertex() check by Anbang Xu · 12 years ago
- 3475209 Extract method name and make it meaningful by Anbang Xu · 12 years ago
- 8fa9d09 P1 pass all the test. P1 should be correct one and can be used to do comparison by Anbang Xu · 12 years ago
- 9a70cf3 Add dirMapper to mapKey in P1 by Anbang Xu · 12 years ago
- 11558a0 P1 pass test, except head_7(which has multiple updates) by Anbang Xu · 12 years ago
- 4bb7716 add testcase for P1 by Anbang Xu · 12 years ago
- 99ea1c4 Clean up code by Anbang Xu · 12 years ago
- 6a47868 Fix P1 by Anbang Xu · 12 years ago
- aa74657 P1 pass testcase in which #pathnode is even by Anbang Xu · 12 years ago
- f577a66 Exclude FakeVertex in ouput format by Anbang Xu · 12 years ago
- 1a7bc8b Fix a bug in sendUpdateMsg(). setMergeDir should be in the front of sendUpdateMsg by Anbang Xu · 12 years ago
- 64bb87e Add EdgeList.unionAdd(EdgeList) by Anbang Xu · 12 years ago
- eebeaf8 add isFlip to MessageFlag by Anbang Xu · 12 years ago
- 6744c68 Add updateMsg to P1, P1 need to deal with the case in which #pathnode is even by Anbang Xu · 12 years ago
- b8c534c Clean up some old P1 code by Anbang Xu · 12 years ago
- cca4428 Override the reduce function typically for P1 by Anbang Xu · 12 years ago
- 6c063e3 Adapt new broadcastMergeMsg by Anbang Xu · 12 years ago
- 0b163b0 add boolean flag to broadcastKillself. may deley killSelf by Anbang Xu · 12 years ago
- d7fb5ef fixing P1 by Anbang Xu · 12 years ago
- cc1135b change addEdge to unionEdge in update by Anbang Xu · 12 years ago
- 4b21369 Fix TandemRepeatAndCycle bug by Anbang Xu · 12 years ago
- 3e91447 add test case for tandem repeats with multiple self-edges by Jake Biesinger · 12 years ago
- 5ecb66f seperate MessageFlag and State by Anbang Xu · 12 years ago
- 016d7ff Merge branch 'genomix/fullstack_genomix' of https://code.google.com/p/hyracks into genomix/fullstack_genomix by Anbang Xu · 12 years ago
- 7e8075b correct the input format for P2 by Anbang Xu · 12 years ago
- 8c9ed0f update driver to use P2's custom input and outputformat classes by Jake Biesinger · 12 years ago
- 016c6f4 add P2GraphInputFormat by Anbang Xu · 12 years ago
- 67ae8ad ADD more testcases for pathmerge by Anbang Xu · 12 years ago
- 63e5756 add lock to fakenode exist check by Anbang Xu · 12 years ago
- db7f854 clean up useless code by Anbang Xu · 12 years ago
- e830955 Merge branch 'anbangx/fullstack_genomix' into genomix/fullstack_genomix by Anbang Xu · 12 years ago
- 385dca4 Add sychnized lock to P2 to avoid duplicate fake nodes by Anbang Xu · 12 years ago
- 24f2ead add boolean flag to switch method between P2 and P4 by Anbang Xu · 12 years ago
- 2acd0b6 Fix one bug in P2/P4 by Anbang Xu · 12 years ago
- ae62ffe P2 pass all the tests except cycle by Anbang Xu · 12 years ago
- 027051e Add flag to notice apex to updateEdge by Anbang Xu · 12 years ago
- e3d4c1a Succeed to apply apexMap by Anbang Xu · 12 years ago
- 20a03b1 add kmerAndDirWritable by Anbang Xu · 12 years ago
- 6485489 Final Vertex Has correct edgelist by Anbang Xu · 12 years ago
- fad0703 going to use different rules to identify head by Anbang Xu · 12 years ago
- 9de0ad3 P2 pass single tests by Anbang Xu · 12 years ago
- 14d58f0 remove sendOutUpdate for head(P2 debug) by Anbang Xu · 12 years ago
- a7405c1 add should merge dir to state by Anbang Xu · 12 years ago
- 522b5ff Change update condition by Anbang Xu · 12 years ago
- 39b490b change updateEdges for processUpdate in pathmerge by Anbang Xu · 12 years ago
- d429aee revert to previous initVertex behavior by Jake Biesinger · 12 years ago
- 99d5629 Fix a bug in configure isFlip by Anbang Xu · 12 years ago
- 7da37db P2 internalKmer merge is completed in single path test by Anbang Xu · 12 years ago
- 3d9ecc5 p2 pass test 2,3 by Anbang Xu · 12 years ago
- 129879d add getVertexValue in P2value type by Anbang Xu · 12 years ago
- d5f760c add p2 graph input format, initiate prependMergeNode and appendMergeNode by Anbang Xu · 12 years ago
- 188c182 add processP2Merge to P2, P2 need a specific merge method by Anbang Xu · 12 years ago