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asterix-gerrit.ics.uci.edu / hyracks / 423fd167e2fbe557dffddb54089b1ddc474d5f2c
  1. 423fd16 Fix all synchronization issues by Anbang Xu · 12 years ago
  2. 81833a0 add scaffoldingAggregator by Anbang Xu · 12 years ago
  3. ee7dac3 Add synchronization to static variable by Anbang Xu · 12 years ago
  4. 558ea60 Merge aggregator with main branch by Anbang Xu · 12 years ago
  5. 50b28b6 Adpat hadoop testsuite to have linespermap arg by Anbang Xu · 12 years ago
  6. 806ff79 add linesPerMap parameter to hadoop graph building driver by Anbang Xu · 12 years ago
  7. 4da15b2 add many similar bubbles in one pattern test case and BubbleMerge pass test by Anbang Xu · 12 years ago
  8. a9c60b3 The aggregator for all the patterns are completed by Anbang Xu · 12 years ago
  9. 1aed014 add statistics counters to removeTip, pathMerge, removeBridge by Anbang Xu · 12 years ago
  10. 4e63417 fix location of stores.properties by Jake Biesinger · 12 years ago
  11. dd63616 add stores.properties (deleted by?) by Jake Biesinger · 12 years ago
  12. 476760d Add timed logging to genomix-driver jobs by Jake Biesinger · 12 years ago
  13. 7f2208f PathMerge aggregator is completed by Anbang Xu · 12 years ago
  14. 52a279f Aggregator passes test by Anbang Xu · 12 years ago
  15. b1c7809 testing by Anbang Xu · 12 years ago
  16. f3a548c move aggregator output to test by Anbang Xu · 12 years ago
  17. daa7780 fix NLineInputFormat for real by Jake Biesinger · 12 years ago
  18. 6ec5f66 don't use NLineInputFormat for now by Jake Biesinger · 12 years ago
  19. ca28b1b add StatisticsCounterAggregator by Anbang Xu · 12 years ago
  20. 270d47a add NlineInputFormat by Nan Zhang · 12 years ago
  21. 0d0f899 use command-line args in genomix-driver by Jake Biesinger · 12 years ago
  22. 014dafc add graph building checking job by Nan Zhang · 12 years ago
  23. 7ac727c Merge branch 'anbangx/fullstack_genomix' into genomix/fullstack_genomix by Anbang Xu · 12 years ago
  24. 676a268 stats are binned by whole value by Jake Biesinger · 12 years ago
  25. affc0b4 toString's on edgeList and positionList are sorted by Jake Biesinger · 12 years ago
  26. 65ee367 add STATS and DUMP_FASTA steps to the graph (run locally) by Jake Biesinger · 12 years ago
  27. 9fdf74d larger chunks for hadoop graphbuilding by Jake Biesinger · 12 years ago
  28. 5be5c46 fix coresPerMachine's default values by Jake Biesinger · 12 years ago
  29. 8c187a6 add RandonWalk test case by Anbang Xu · 12 years ago
  30. 88e9442 RemoveTip pass test by Anbang Xu · 12 years ago
  31. e71a964 Unroll Repeat pass test by Anbang Xu · 12 years ago
  32. 28cbeae save intermediate results by default (found a bug in pregelix-core?) by Jake Biesinger · 12 years ago
  33. 8b79c57 don't save intermediate results by default; add option to do so by Jake Biesinger · 12 years ago
  34. 67688c3 remove the genomix-pregelix testcase config files (again) by Jake Biesinger · 12 years ago
  35. f9e6e5f add hadoop building to the driver by Jake Biesinger · 12 years ago
  36. 17b99f2 add stop haltNode in pathmerge and fix the bug Jake mentioned by Anbang Xu · 12 years ago
  37. 39cfc58 add synthetic test case by Jake Biesinger · 12 years ago
  38. 9dec13e remove generated genomix-pregel test case xml files by Jake Biesinger · 12 years ago
  39. c2aa582 Merge branch 'anbangx/backupMergingWithMaster' into genomix/fullstack_genomix by Jake Biesinger · 12 years ago
  40. 1e03787 Merge branch 'anbangx/backupMergingWithMaster_errorcase' into wbiesing/merge_fs_backup by Jake Biesinger · 12 years ago
  41. b19ba95 BubbleMerge pass complicated test cases by Anbang Xu · 12 years ago
  42. fc4fe25 add failing pathmerge testcase by Jake Biesinger · 12 years ago
  43. 32a956b fix one bug in path merge by Anbang Xu · 12 years ago
  44. 630586c add test case for synthetic data by Jake Biesinger · 12 years ago
  45. d75565c add option for corespermachine in jobconf by Nan Zhang · 12 years ago
  46. d980562 small clean for genomix-hyracks code by Nan Zhang · 12 years ago
  47. 21c3906 genomix-driver copies results to text by Jake Biesinger · 12 years ago
  48. 5747845 Pregelix JobGenerator uses proper GenomixJobConf by Jake Biesinger · 12 years ago
  49. 96eab83 Merge branch 'anbangx/backupMergingWithMaster' into wbiesing/driver_backup_merge by Jake Biesinger · 12 years ago
  50. 26e7332 BubbleMerge test is almost finished except grid test case by Anbang Xu · 12 years ago
  51. 0d6afba remove minidfs cluster (so writing directly to lcoal disk now) by Jake Biesinger · 12 years ago
  52. 34c19fd refactoring local mode by Jake Biesinger · 12 years ago
  53. ab0b235 test Rectangle by Anbang Xu · 12 years ago
  54. febbaf1 add EdgeListWritable.addUnion(edge) by Jake Biesinger · 12 years ago
  55. 85dfedf Add broadcaseKillselfAndNoticeToUpdateEdges and responseToDeadVertexAndUpdateEdges by Anbang Xu · 12 years ago
  56. 2075152 add .tar.gz as an assembly target by Jake Biesinger · 12 years ago
  57. a332dbe copy conf directory into binary assembly output by Jake Biesinger · 12 years ago
  58. 4e22bc4 genomix driver takes a directory as local input by Jake Biesinger · 12 years ago
  59. 002533a genomix driver -ip and -runLocal are mutually exclusive by Jake Biesinger · 12 years ago
  60. 3e1eb90 change bubble merge "add" to use boolean `flip` by Jake Biesinger · 12 years ago
  61. c0b37b1 change bubble's pre-condition -- pathNode to anyNode by Anbang Xu · 12 years ago
  62. 97d97cd add bubble's addReadIDs by Jake Biesinger · 12 years ago
  63. e763a06 add complicated test case for BubbleMerge by Anbang Xu · 12 years ago
  64. 51a0502 separate genomix driver in/out to local/hdfs by Jake Biesinger · 12 years ago
  65. 34feeb2 add hyracks .properties and scripts to genomix-driver by Jake Biesinger · 12 years ago
  66. 251ecde harden hryacks scripts a bit by Jake Biesinger · 12 years ago
  67. 1e8c661 driver pom generates cc and nc scripts by Jake Biesinger · 12 years ago
  68. 9071ad4 Merge branch 'nanzhang/hyracks_genomix' into genomix/fullstack_genomix by Nan Zhang · 12 years ago
  69. fdf2c25 stable running with partition 4 by Nan Zhang · 12 years ago
  70. c7c196d remove patch.diff by Jake Biesinger · 12 years ago
  71. 25a66b3 stop removing `expected` dir during clean (used for testing) by Jake Biesinger · 12 years ago
  72. fad8c77 update genomix-driver pom to use auto-generated script by Jake Biesinger · 12 years ago
  73. 6ddc6cc testing BubbleMerge by Anbang Xu · 12 years ago
  74. 3aba0f0 SplitRepeat test is completed by Anbang Xu · 12 years ago
  75. 0ca485b Don't use l1 and l2 in VKmerBytesWritable by Anbang Xu · 12 years ago
  76. 5800f2b Merge branch 'master' into anbangx/backupMergingWithMaster by Anbang Xu · 12 years ago
  77. 0ea5c92 Remove pregel dependence on hadoop and hyracks by Anbang Xu · 12 years ago
  78. 41ffd05 Merge with main branch by Anbang Xu · 12 years ago
  79. 4a9e45c Add testcases for SplitRepeat by Anbang Xu · 12 years ago
  80. 6aae1de don't use root HDFS path by Jake Biesinger · 12 years ago
  81. 6d42a69 add medification on jobconf by Nan Zhang · 12 years ago
  82. 8270c5a Merge cycle to a single node in path merge. P4 test is completed by Anbang Xu · 12 years ago
  83. 4c7fca6 add hadoop conf into the genomix-hyracks scripts by Nan Zhang · 12 years ago
  84. d688b5a Add skip tandem repeat to pathmerge. TODO: detect cycle in pathmerge by Anbang Xu · 12 years ago
  85. 971c984 genomix driver actually uses cmdline args by Jake Biesinger · 12 years ago
  86. b2d89d1 remove junit and pmcommon dependencies by Jake Biesinger · 12 years ago
  87. 74dd489 fix appassembler for pregelix by Jake Biesinger · 12 years ago
  88. 3038537 appassembler for genomix driver by Jake Biesinger · 12 years ago
  89. adac3ef modify path for static test in driver by Jake Biesinger · 12 years ago
  90. 87b679f Merge branch 'anbangx/fullstack_genomix' into wbiesing/driver by Jake Biesinger · 12 years ago
  91. 2f3e3bb PathMerge pass test except TandemRepeat. TODO: skip TandemRepeat in pathmerge by Anbang Xu · 12 years ago
  92. 03434ff add hyracks-built graph as a pregelix test case by Jake Biesinger · 12 years ago
  93. 6c997b7 Fix kmer used in minicluster by Jake Biesinger · 12 years ago
  94. c9fe0a9 driver adapts to build output (InitialGraphInputFormat) by Jake Biesinger · 12 years ago
  95. 9c01d09 Fix mergeReadID RF and RR by Jake Biesinger · 12 years ago
  96. 569945a add RF/FR with/without head test for pathmerge by Anbang Xu · 12 years ago
  97. 1e86fe0 choose the unmerge_graphbuilding for genomix-driver by Nan Zhang · 12 years ago
  98. 7a75b07 add updateEdges for pathmerge. Issue: mergeWithStartreads by Anbang Xu · 12 years ago
  99. 9ac0dda Modify mergeWithKmer to mergeWithNode by Anbang Xu · 12 years ago
  100. 909de70 Merge branch 'master' into genomix/fullstack_genomix by Nan Zhang · 12 years ago