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asterix-gerrit.ics.uci.edu / hyracks / 3e70ffe61952d6a91a198c15c122dbf6e3091f4a / genomix / genomix-hadoop
  1. 3e70ffe PathNodeInitial updateable optimization by Jake Biesinger · 12 years ago
  2. 24e076f PathNodeInitial identifies nodes needing updates by Jake Biesinger · 12 years ago
  3. 1920264 refactor: MessageFlag is now MergeMessageFlag by Jake Biesinger · 12 years ago
  4. 7c1d870 H4 driver works with multipleOutputs by Jake Biesinger · 12 years ago
  5. f20a7e7 Fix path separators in test cases by Jake Biesinger · 12 years ago
  6. 76cc619 simplify graphbuilding driver by Jake Biesinger · 12 years ago
  7. 86e8c3a simplify driver and test case for h4 graph building by Jake Biesinger · 12 years ago
  8. 87a1029 mergepaths uses multipleoutputs properly (prep for update code) by Jake Biesinger · 12 years ago
  9. c0e90ce simplify hadoop graphbuilding test case by Jake Biesinger · 12 years ago
  10. ec499a1 remove tips initial by Jake Biesinger · 12 years ago
  11. 82b237b Better testing for initial path merge by Jake Biesinger · 12 years ago
  12. 09cf1d1 facilitate better testing via more constructors and proper hashing/equals by Jake Biesinger · 12 years ago
  13. 90752e7 non-path nodes are pushed to "complete" output by Jake Biesinger · 12 years ago
  14. 57971b6 path node works for complex starts by Jake Biesinger · 12 years ago
  15. e0fa424 Update H4 to new graph style by Jake Biesinger · 12 years ago
  16. 5932b3b fix test case paths by Jake Biesinger · 12 years ago
  17. bf8f525 Fix spelling by Jake Biesinger · 12 years ago
  18. 9ac3f6c reformat by Jake Biesinger · 12 years ago
  19. 03364d3 restore strangely deleted MergePaths code by Jake Biesinger · 12 years ago
  20. d91b4fb Fix H3 test case by Jake Biesinger · 12 years ago
  21. 5215ff5 Updated base class for tests allows mutliple Test cases by Jake Biesinger · 12 years ago
  22. 79da38a clean code by Nan Zhang · 12 years ago
  23. 5d3d527 delete he pcommon by Nan Zhang · 12 years ago
  24. 37cc20b hadoop graph building completion by Nan Zhang · 12 years ago
  25. e66c773 build graph by Nan Zhang · 12 years ago
  26. eb8d72a Merge commit '951870ef4642f2003c4240eeef702fc90600fe77' into nanzhang/genomix by Nan Zhang · 12 years ago
  27. 3a26a3a merge with jianfeng-reverse by Nan Zhang · 12 years ago
  28. 3931ef7 Broke test cases into base class plus small tests by Jake Biesinger · 12 years ago
  29. e7b1730 Merge branch 'genomix/fullstack_bidirection' into jianfeng/genomix-reverse by Jianfeng Jia · 12 years ago
  30. f8261bc Add a unit test for H3 which builds the graph by Jake Biesinger · 12 years ago
  31. 9bc1c38 modify building by Nan Zhang · 12 years ago
  32. c2a055b new graph building progress by Nan Zhang · 12 years ago
  33. 1181e3c modify the driver of velvet_graphbuilding by Nan Zhang · 12 years ago
  34. 7f506a1 modify the DeepGraphBuildingMapper by Nan Zhang · 12 years ago
  35. e215121 Merge branch 'nanzhang/genomix' into genomix/fullstack_genomix by Nan Zhang · 12 years ago
  36. b8ae860 modify the velvet-graph building package by Nan Zhang · 12 years ago
  37. 8663daa Merge branch 'nanzhang/genomix' into genomix/fullstack_genomix by Nan Zhang · 12 years ago
  38. d01123b Use different initial and subsequent mappers in H3 by Jake Biesinger · 12 years ago
  39. 01454bd H3 implemented, untested by Jake Biesinger · 12 years ago
  40. d891139 WIP: H3 implementation, using multiple tails by Jake Biesinger · 12 years ago
  41. 7c14c8f Merge branch 'genomix/fullstack_genomix' of https://code.google.com/p/hyracks into jianfeng/genomix by Jianfeng Jia · 12 years ago
  42. 369fccb update the velvetGrapubuilding package by Nan Zhang · 12 years ago
  43. c49ce70 add package to build old package success by Nan Zhang · 12 years ago
  44. a688f7d change name of one package by Nan Zhang · 12 years ago
  45. c61eeb4 Merge branch 'genomix/fullstack_genomix' into genomix/velvet_graphbuilding by Nan Zhang · 12 years ago
  46. cfb8871 delete the genomic.data.experiments by Nan Zhang · 12 years ago
  47. 46cca29 update result3 by Nan Zhang · 12 years ago
  48. 006ff46 new package for path merge by Nan Zhang · 12 years ago
  49. b1ee50c merge path update by Nan Zhang · 12 years ago
  50. b52a13d new update for new version graph-building by Nan Zhang · 12 years ago
  51. 0047d3c after code view h1 h2 update by Nan Zhang · 12 years ago
  52. bef5ad0 Merge branch 'genomix/fullstack_genomix' of https://code.google.com/p/hyracks into genomix/fullstack_genomix by Nan Zhang · 12 years ago
  53. 9bb94d2 new GenomixMapper by Nan Zhang · 12 years ago
  54. c2aac14 new version of genomix graph building frameworks by Nan Zhang · 12 years ago
  55. 3991572 Merge branch 'genomix/fullstack_genomix' of https://code.google.com/p/hyracks into genomix/fullstack_genomix by Nan Zhang · 12 years ago
  56. 18a954f add new version graph building frameworks by Nan Zhang · 12 years ago
  57. c9d802a Remove mac .DS_Store files and ignore them in the future. by Jake Biesinger · 12 years ago
  58. be015c7 add new data by hadoop · 12 years ago
  59. 13bdf01 delete the data by hadoop · 12 years ago
  60. daddc1e add a file by hadoop · 12 years ago
  61. 4441e04 delete the expected file by hadoop · 12 years ago
  62. dbc32ae adjust h1 code by hadoop · 12 years ago
  63. a71ef93 delete the endnodefile by hadoop · 12 years ago
  64. 42a210a change new name for hadoop program by hadoop · 12 years ago
  65. dfd15e1 change the test name by hadoop · 12 years ago
  66. ca08468 change name for files by hadoop · 12 years ago
  67. 7bdfe88 Merge branch 'fullstack_genomix' of https://code.google.com/p/hyracks into fullstack_genomix by hadoop · 12 years ago
  68. a3a8958 new h2 modified by hadoop · 12 years ago
  69. 9e6792f bump versions in poms by buyingyi · 12 years ago
  70. 97ff7e7 delete actual files by hadoop · 12 years ago
  71. f695447 newist h2 code by hadoop · 12 years ago
  72. 9832f24 delete actual by hadoop · 12 years ago
  73. 5f3fce8 deleted all actual file by hadoop · 12 years ago
  74. 9f12f4e Merge branch 'fullstack_genomix' of https://code.google.com/p/hyracks into fullstack_genomix by hadoop · 12 years ago
  75. c07f6bf new h2 by hadoop · 12 years ago
  76. 8824dde Merge branch 'fullstack_genomix' of https://code.google.com/p/hyracks into fullstack_genomix by hadoop · 12 years ago
  77. 3c3f2b7 Change return value of shiftKmer from bitmap to genecode by JavierJia · 12 years ago
  78. 00f6336 h2h2 by hadoop · 12 years ago
  79. 99f0202 Please enter the commit message for your changes. Lines starting by hadoop · 12 years ago
  80. 4163db2 h1 changes by hadoop · 12 years ago
  81. 691aa67 Merge branch 'fullstack_genomix' of https://code.google.com/p/hyracks into fullstack_genomix by hadoop · 12 years ago
  82. 0c37dd0 make genomix-hadoop genomix-hyracks compilable by JavierJia · 12 years ago
  83. 3c2876f make h1 test case pass by hadoop · 12 years ago
  84. 6dbd752 merge fullstack_dynamic_deployment by buyingyi · 12 years ago
  85. 74b72ca change fix bytes array to flexible bytes with offset and length in KmerUtil by jianfeng.jia@gmail.com · 12 years ago
  86. 8a89876 hadoop pathmerge h1 algorithm by zhangnan2920214@gmail.com · 12 years ago
  87. c410249 hadoop pathmerge h1 algorithm by zhangnan2920214@gmail.com · 12 years ago
  88. d5b6dc7 add reversed kmer option by jianfeng.jia@gmail.com · 12 years ago
  89. ed8b8eb svn merge -r3112:3163 https://hyracks.googlecode.com/svn/branches/fullstack_asterix_stabilization svn merge -r3173:3188 https://hyracks.googlecode.com/svn/branches/fullstack_release_candidate@3234 svn merge -r3209:3233 https://hyracks.googlecode.com/svn/trunk/fullstack by anbangx · 12 years ago
  90. 96f2a1f merge with genomix-data by zhangnan2920214@gmail.com · 12 years ago
  91. 895384a rm genomix-hadoop target by jianfeng.jia@gmail.com · 12 years ago
  92. 56a0969 the cluster version by zhangnan2920214@gmail.com · 12 years ago
  93. 6be6225 the cluster version by zhangnan2920214@gmail.com · 12 years ago
  94. e2cb8f6 add valuewritable by zhangnan2920214@gmail.com · 12 years ago
  95. cf793ad sequential file format by zhangnan2920214@gmail.com · 12 years ago
  96. f149d8f create svn dir by zhangnan2920214@gmail.com · 12 years ago
  97. c213252 add the byteswritable by zhangnan2920214@gmail.com · 12 years ago
  98. 3c9a91c merge fullstack_asterix_stabilization r:2821:2854 by buyingyi · 12 years ago
  99. d532948 merge -r2815:2821 from fullstack_asterix_stabilization by buyingyi · 12 years ago
  100. 44ebc7e merge fullstack_asterix_stabilization r2783:2800 by buyingyi · 12 years ago