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asterix-gerrit.ics.uci.edu / hyracks / 395ce719656bcfadbb14177c2ca09aca4d0542a1 / genomix
  1. 395ce71 Merge branch 'wbiesing/debug_hyracks_build' into genomix/fullstack_genomix by Nan Zhang · 12 years ago
  2. f30f2db remove max_readid_value in genomix-data, remove all hard-coding code for genomix-hyracks by Nan Zhang · 12 years ago
  3. 39f3125 MAKE genomix package no error by Anbang Xu · 12 years ago
  4. 440f1ff Merge branch 'anbangx/log' into genomix/fullstack_genomix by Anbang Xu · 12 years ago
  5. aaf3af2 Delete old LogFormatter by Anbang Xu · 12 years ago
  6. 30ecc2d Refactore FineOnlyFormatter to PathMergeFormatter by Anbang Xu · 12 years ago
  7. 1be8865 use LogUtil by Anbang Xu · 12 years ago
  8. b78d555 Don't use customer formatter anymore, everything uses java.util.Logger by Anbang Xu · 12 years ago
  9. d0cbe03 add beefier test case for EdgeListWritable by Jake Biesinger · 12 years ago
  10. 2eff046 use java.util.logging instead of apache commons logging by Jake Biesinger · 12 years ago
  11. 20a80e6 standardize logging across eclipse-test, eclipse-main, and maven by Jake Biesinger · 12 years ago
  12. 668f8a3 configure parameter of java.util.logger and prepare to test simple logger by Anbang Xu · 12 years ago
  13. a3e7a7c Add setAsCopy to VertexValueWritable and MessageWritable and format the output of Logging by Anbang Xu · 12 years ago
  14. b6e7014 Logging message in pathmerge by Anbang Xu · 12 years ago
  15. 2cde27a Add setAsCopy to MessageWritable by Anbang Xu · 12 years ago
  16. a49f0fd Add vertex.state to log by Anbang Xu · 12 years ago
  17. 4f916d6 add automatic clean log store by Anbang Xu · 12 years ago
  18. 56626a7 add loggingNode method() by Anbang Xu · 12 years ago
  19. 397aba9 Remove old state type by Anbang Xu · 12 years ago
  20. b8d4503 Delete old testcase by Anbang Xu · 12 years ago
  21. 14fb2b9 add random test et by Anbang Xu · 12 years ago
  22. e3ca759 add PathMergeLogFormatter by Anbang Xu · 12 years ago
  23. ebeba41 use ps in linux by Anbang Xu · 12 years ago
  24. d9933eb add getKmerNeighber by Anbang Xu · 12 years ago
  25. 4a0d101 add neighbor-finding python script by Jake Biesinger · 12 years ago
  26. 2ce9d38 Add some print statements for missing readids by Jake Biesinger · 12 years ago
  27. 3681903 Change sort to shuf by Anbang Xu · 12 years ago
  28. ab586f4 small changes by Anbang Xu · 12 years ago
  29. 6faadad add graph build automatical test script by Anbang Xu · 12 years ago
  30. df811e5 add SymmetryChecker by Anbang Xu · 12 years ago
  31. 6c79239 add AAA testcase by Anbang Xu · 12 years ago
  32. ac2e96e fix graphviz in mac OS by Anbang Xu · 12 years ago
  33. a3f2453 add OSvalidator for graphviz by Nan Zhang · 12 years ago
  34. fa54cda change in randomdata.sh, redirect error logs to another folder by Anbang Xu · 12 years ago
  35. e7afab6 add more details in randomData.sh by Anbang Xu · 12 years ago
  36. bedbf44 Merge branch 'anbangx/P1' into genomix/fullstack_genomix by Anbang Xu · 12 years ago
  37. 4c416ff Delete isFakeVertex() check by Anbang Xu · 12 years ago
  38. 3475209 Extract method name and make it meaningful by Anbang Xu · 12 years ago
  39. 8fa9d09 P1 pass all the test. P1 should be correct one and can be used to do comparison by Anbang Xu · 12 years ago
  40. 9a70cf3 Add dirMapper to mapKey in P1 by Anbang Xu · 12 years ago
  41. 11558a0 P1 pass test, except head_7(which has multiple updates) by Anbang Xu · 12 years ago
  42. 4bb7716 add testcase for P1 by Anbang Xu · 12 years ago
  43. 99ea1c4 Clean up code by Anbang Xu · 12 years ago
  44. 6a47868 Fix P1 by Anbang Xu · 12 years ago
  45. 5de7afd remove incompatible words for results checking tool by Nan Zhang · 12 years ago
  46. d17a2a2 remove NLineInputFormat for hadoop graph building by Nan Zhang · 12 years ago
  47. aa74657 P1 pass testcase in which #pathnode is even by Anbang Xu · 12 years ago
  48. f577a66 Exclude FakeVertex in ouput format by Anbang Xu · 12 years ago
  49. 1a7bc8b Fix a bug in sendUpdateMsg(). setMergeDir should be in the front of sendUpdateMsg by Anbang Xu · 12 years ago
  50. 64bb87e Add EdgeList.unionAdd(EdgeList) by Anbang Xu · 12 years ago
  51. eebeaf8 add isFlip to MessageFlag by Anbang Xu · 12 years ago
  52. 6744c68 Add updateMsg to P1, P1 need to deal with the case in which #pathnode is even by Anbang Xu · 12 years ago
  53. b8c534c Clean up some old P1 code by Anbang Xu · 12 years ago
  54. cca4428 Override the reduce function typically for P1 by Anbang Xu · 12 years ago
  55. 6c063e3 Adapt new broadcastMergeMsg by Anbang Xu · 12 years ago
  56. 0b163b0 add boolean flag to broadcastKillself. may deley killSelf by Anbang Xu · 12 years ago
  57. d7fb5ef fixing P1 by Anbang Xu · 12 years ago
  58. e1d8840 Merge branch 'genomix/fullstack_genomix' of https://code.google.com/p/hyracks into genomix/fullstack_genomix by Anbang Xu · 12 years ago
  59. cc1135b change addEdge to unionEdge in update by Anbang Xu · 12 years ago
  60. bd8ee91 correct randomdata.sh by Anbang Xu · 12 years ago
  61. ef688ee update randomdata script to log to a file and only keep error files by Jake Biesinger · 12 years ago
  62. b204a4a remove the io.sort factor in hadoop by Nan Zhang · 12 years ago
  63. 139234c fix the bug of hyracks_inputformat opts by Nan Zhang · 12 years ago
  64. 34eccad modify random data script to be more helpful in errors by Anbang Xu · 12 years ago
  65. 1c51f32 add script for creating random data by Anbang Xu · 12 years ago
  66. d309f00 add tandem repeat cases for hyracks graphbuilding by Jake Biesinger · 12 years ago
  67. 1280087 fixed hyracks graphbuild tests by Jake Biesinger · 12 years ago
  68. 4b21369 Fix TandemRepeatAndCycle bug by Anbang Xu · 12 years ago
  69. 3e91447 add test case for tandem repeats with multiple self-edges by Jake Biesinger · 12 years ago
  70. 5236ed2 remove default values for output format of hyracks graph build by Nan Zhang · 12 years ago
  71. c33e4b7 add option for hyracks driver to have text output by Nan Zhang · 12 years ago
  72. 5ecb66f seperate MessageFlag and State by Anbang Xu · 12 years ago
  73. fb6b585 forgot to import BspUtils :) by Jake Biesinger · 12 years ago
  74. 016d7ff Merge branch 'genomix/fullstack_genomix' of https://code.google.com/p/hyracks into genomix/fullstack_genomix by Anbang Xu · 12 years ago
  75. 7e8075b correct the input format for P2 by Anbang Xu · 12 years ago
  76. 8c9ed0f update driver to use P2's custom input and outputformat classes by Jake Biesinger · 12 years ago
  77. d877381 Merge branch 'anbangx/fullstack_genomix' into genomix/fullstack_genomix by Anbang Xu · 12 years ago
  78. 016c6f4 add P2GraphInputFormat by Anbang Xu · 12 years ago
  79. 3f9dc1d Merge branch 'nanzhang/hyracks_genomix' into genomix/fullstack_genomix by Nan Zhang · 12 years ago
  80. addf565 FramSize Test normal run by Nan Zhang · 12 years ago
  81. 67ae8ad ADD more testcases for pathmerge by Anbang Xu · 12 years ago
  82. 63e5756 add lock to fakenode exist check by Anbang Xu · 12 years ago
  83. db7f854 clean up useless code by Anbang Xu · 12 years ago
  84. e830955 Merge branch 'anbangx/fullstack_genomix' into genomix/fullstack_genomix by Anbang Xu · 12 years ago
  85. 385dca4 Add sychnized lock to P2 to avoid duplicate fake nodes by Anbang Xu · 12 years ago
  86. 24f2ead add boolean flag to switch method between P2 and P4 by Anbang Xu · 12 years ago
  87. 9a0ab2f add overall step timings by Jake Biesinger · 12 years ago
  88. b775a8c fix -runLocal! preglix and hyracks use different CC's, NC's and ports by Jake Biesinger · 12 years ago
  89. 2acd0b6 Fix one bug in P2/P4 by Anbang Xu · 12 years ago
  90. 943109c Merge branch 'nanzhang/hyracks_genomix' of https://code.google.com/p/hyracks into nanzhang/hyracks_genomix by Nan Zhang · 12 years ago
  91. d7ded9c small change on hyracks_genomix by Nan Zhang · 12 years ago
  92. 98edaf9 add sinlgelongread test set by Nan Zhang · 12 years ago
  93. b4a494e frameSize pressure test coding complete by Nan Zhang · 12 years ago
  94. b38f2fb add getclassloader() log for hyracks' driver by Nan Zhang · 12 years ago
  95. b01f8e8 change the stat package name in graph building of hyracks by Nan Zhang · 12 years ago
  96. 2e63796 add graphviz mac version for graph building of hyracks by Nan Zhang · 12 years ago
  97. 495440b add frame size pressure test package in driver by Nan Zhang · 12 years ago
  98. ae62ffe P2 pass all the tests except cycle by Anbang Xu · 12 years ago
  99. 027051e Add flag to notice apex to updateEdge by Anbang Xu · 12 years ago
  100. e3d4c1a Succeed to apply apexMap by Anbang Xu · 12 years ago