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hyracks
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3931ef73843e06eb8b3a09310a0738c47839af9c
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genomix
3931ef7
Broke test cases into base class plus small tests
by Jake Biesinger
· 12 years ago
bf9401e
increase default frameSize to 128K
by Jianfeng Jia
· 12 years ago
8040709
add log to watch the tuple size
by Jianfeng Jia
· 12 years ago
12b4280
Merge branch 'jianfeng/genomix' into jianfeng/genomix-reverse
by Jianfeng Jia
· 12 years ago
5ba19e2
add more information for larger data debug
by Jianfeng Jia
· 12 years ago
genomix/unidirection
8a50889
fix outputKmerFactory racing problem
by Jianfeng Jia
· 12 years ago
33dc862
fix debugNc script
by JavierJia
· 12 years ago
dba2ebf
Merge branch 'jianfeng/genomix' into jianfeng/genomix-reverse
by Jianfeng Jia
· 12 years ago
22616cf
fixed the racing problem
by Jianfeng Jia
· 12 years ago
e7b1730
Merge branch 'genomix/fullstack_bidirection' into jianfeng/genomix-reverse
by Jianfeng Jia
· 12 years ago
edb2170
Merge branch 'wbiesing/genomix/h3' into jianfeng/genomix-reverse
by Jake Biesinger
· 12 years ago
f8261bc
Add a unit test for H3 which builds the graph
by Jake Biesinger
· 12 years ago
763ee99
fix builder.reset bug
by JavierJia
· 12 years ago
aa985fe
Merge branch 'jianfeng/genomix' into jianfeng/genomix-reverse
by Jianfeng Jia
· 12 years ago
1f37dce
fix builder.reset bug
by JavierJia
· 12 years ago
1d7de64
Merge branch 'jianfeng/genomix' into jianfeng/genomix-reverse
by Jianfeng Jia
· 12 years ago
923b215
Merge branch 'jianfeng/genomix' into genomix/fullstack_genomix
by Jianfeng Jia
· 12 years ago
1be1d3e
fix binary format test
by JavierJia
· 12 years ago
6e8b44b
change pom main class
by Jianfeng Jia
· 12 years ago
bb2dd3f
change main class
by Jianfeng Jia
· 12 years ago
48ef17c
Merge branch 'jianfeng/genomix-reverse' into genomix/fullstack_genomix
by Jianfeng Jia
· 12 years ago
f6640db
Passed test
by Jianfeng Jia
· 12 years ago
562116a
finished framework. not test yet
by Jianfeng Jia
· 12 years ago
8528899
finish framework
by Jianfeng Jia
· 12 years ago
c2a055b
new graph building progress
by Nan Zhang
· 12 years ago
006f744
Merge commit '983a7076e4b24cd421d16a3cd6987bc94275a2bc' into nanzhang/genomix
by Nan Zhang
· 12 years ago
1181e3c
modify the driver of velvet_graphbuilding
by Nan Zhang
· 12 years ago
5033f6f
Update comment.
by Jianfeng Jia
· 12 years ago
587ddb7
finished merge pre and merge next test
by Jianfeng Jia
· 12 years ago
7f506a1
modify the DeepGraphBuildingMapper
by Nan Zhang
· 12 years ago
e215121
Merge branch 'nanzhang/genomix' into genomix/fullstack_genomix
by Nan Zhang
· 12 years ago
b8ae860
modify the velvet-graph building package
by Nan Zhang
· 12 years ago
8663daa
Merge branch 'nanzhang/genomix' into genomix/fullstack_genomix
by Nan Zhang
· 12 years ago
d01123b
Use different initial and subsequent mappers in H3
by Jake Biesinger
· 12 years ago
01454bd
H3 implemented, untested
by Jake Biesinger
· 12 years ago
0669e98
add isPathNode to NodeWritable
by Jake Biesinger
· 12 years ago
d891139
WIP: H3 implementation, using multiple tails
by Jake Biesinger
· 12 years ago
7c14c8f
Merge branch 'genomix/fullstack_genomix' of https://code.google.com/p/hyracks into jianfeng/genomix
by Jianfeng Jia
· 12 years ago
369fccb
update the velvetGrapubuilding package
by Nan Zhang
· 12 years ago
f14c403
add mergeNext function to kmerWritable
by Jianfeng Jia
· 12 years ago
7636684
refine the logic of generate Node
by Jianfeng Jia
· 12 years ago
103df19
Merge branch 'genomix/fullstack_genomix' of https://code.google.com/p/hyracks into genomix/fullstack_genomix
by AnbangX
· 12 years ago
f5d6db9
change all input and output format to new version
by AnbangX
· 12 years ago
2c48b66
Merge branch 'nanzhang/genomix' into genomix/fullstack_genomix
by Nan Zhang
· 12 years ago
c49ce70
add package to build old package success
by Nan Zhang
· 12 years ago
a6e78ab
do some changes to test git rebase
by AnbangX
· 12 years ago
529a089
finished EndToEnd test
by Jianfeng Jia
· 12 years ago
9804780
passed readid groupby test
by Jianfeng Jia
· 12 years ago
80b312a
passed map kmer to readid operator
by Jianfeng Jia
· 12 years ago
c2bb663
passed kmer groupby test
by Jianfeng Jia
· 12 years ago
c5172dd
reformat JobGen to avoid NonSerializable exception
by Jianfeng Jia
· 12 years ago
ee2e038
finished test framework
by JavierJia
· 12 years ago
935f676
Merge branch 'genomix/velvet_graphbuilding' into genomix/fullstack_genomix
by Jake Biesinger
· 12 years ago
b19726a
change code format in p3
by AnbangX
· 12 years ago
genomix/pre-velvet-graph
6b03061
Merge branch 'genomix/fullstack_genomix' of https://code.google.com/p/hyracks into genomix/fullstack_genomix
by Nan Zhang
· 12 years ago
52a9b96
delete all experiments on fullstack_genomix
by Nan Zhang
· 12 years ago
a688f7d
change name of one package
by Nan Zhang
· 12 years ago
c61eeb4
Merge branch 'genomix/fullstack_genomix' into genomix/velvet_graphbuilding
by Nan Zhang
· 12 years ago
cfb8871
delete the genomic.data.experiments
by Nan Zhang
· 12 years ago
6b5f7a2
update the test to genomix-hyracks
by JavierJia
· 12 years ago
1d11e0a
finish position test
by JavierJia
· 12 years ago
5d192ad
finished genomix-hyracks end to end
by JavierJia
· 12 years ago
5af9dff
finish debug in p3
by AnbangX
· 12 years ago
e85c8a7
merge with hadoop code
by JavierJia
· 12 years ago
ee1fa17
Merge branch 'genomix/velvet_graphbuilding' of https://code.google.com/p/hyracks into genomix/velvet_graphbuilding
by JavierJia
· 12 years ago
fe1391a
passed genomix-data test
by JavierJia
· 12 years ago
e34200e
create some writable based on Jianfeng's hyracks
by Nan Zhang
· 12 years ago
ba0d0d8
clean up kmerWritable
by JavierJia
· 12 years ago
d0f8cbf
Merge branch 'genomix/fullstack_genomix' of https://code.google.com/p/hyracks into genomix/fullstack_genomix
by AnbangX
· 12 years ago
e04250d
add p3
by AnbangX
· 12 years ago
d158252
finish design of NodeReferenc API
by JavierJia
· 12 years ago
46cca29
update result3
by Nan Zhang
· 12 years ago
006ff46
new package for path merge
by Nan Zhang
· 12 years ago
b1ee50c
merge path update
by Nan Zhang
· 12 years ago
b52a13d
new update for new version graph-building
by Nan Zhang
· 12 years ago
db498da
Merge branch 'genomix/fullstack_genomix' of https://code.google.com/p/hyracks into genomix/fullstack_genomix
by AnbangX
· 12 years ago
e406bf5
add hyrack format
by AnbangX
· 12 years ago
0047d3c
after code view h1 h2 update
by Nan Zhang
· 12 years ago
bef5ad0
Merge branch 'genomix/fullstack_genomix' of https://code.google.com/p/hyracks into genomix/fullstack_genomix
by Nan Zhang
· 12 years ago
9bb94d2
new GenomixMapper
by Nan Zhang
· 12 years ago
c2aac14
new version of genomix graph building frameworks
by Nan Zhang
· 12 years ago
3991572
Merge branch 'genomix/fullstack_genomix' of https://code.google.com/p/hyracks into genomix/fullstack_genomix
by Nan Zhang
· 12 years ago
18a954f
add new version graph building frameworks
by Nan Zhang
· 12 years ago
c9d802a
Remove mac .DS_Store files and ignore them in the future.
by Jake Biesinger
· 12 years ago
4c33a7a
finished framework
by JavierJia
· 12 years ago
136c411
finish mapKmerToReadID
by JavierJia
· 12 years ago
dff6815
add kmer factory
by AnbangX
· 12 years ago
fb0c262
add global variable
by AnbangX
· 12 years ago
4b6126b
use byte to check isCycle
by AnbangX
· 12 years ago
685b3cd
add the iteraion option
by AnbangX
· 12 years ago
cbdb971
delete extra class
by AnbangX
· 12 years ago
4b84334
format the code
by AnbangX
· 12 years ago
9a6b70b
add incomingMsg and outgoingMsg and do some optimization after code review
by AnbangX
· 12 years ago
29973b0
add one condition
by AnbangX
· 12 years ago
vault/fullstack_genomix
7b200be
Merge branch 'fullstack_genomix' of https://code.google.com/p/hyracks into fullstack_genomix
by AnbangX
· 12 years ago
48f3635
delete some log
by AnbangX
· 12 years ago
d061bf1
make hyracks test pass
by JavierJia
· 12 years ago
e4d4c6e
add more log
by AnbangX
· 12 years ago
1d841e8
add debug code
by AnbangX
· 12 years ago
61955b4
add log to debug
by AnbangX
· 12 years ago
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