Log - 3054c15931228725be25a606079949e58cb64b33 - hyracks

3054c15 clear the code and fix messageFlag by Anbang Xu · 12 years ago
76b3277 Merge branch 'genomix/fullstack_genomix' of https://code.google.com/p/hyracks into genomix/fullstack_genomix by Anbang Xu · 12 years ago
f947fb8 add test suite case for removetip/removebridge/pathmerge by Anbang Xu · 12 years ago
54f79fb add expected output for pathmerge (singleread) by Jake Biesinger · 12 years ago
fb347c0 Add test cases as input graphs by Jake Biesinger · 12 years ago
8f719e0 Use BuildAllGraphs by Jake Biesinger · 12 years ago
d8f5c89 Formulate test code by Anbang Xu · 12 years ago
48c0cec q by Jake Biesinger · 12 years ago
b679646 Add more test cases for path merge by Jake Biesinger · 12 years ago
ac4a3fb add script for simple random read generation by Jake Biesinger · 12 years ago
4bb565e use argparse for python plotting by Jake Biesinger · 12 years ago
67e67aa more test cases by Jake Biesinger · 12 years ago
c408358 Add python script for visualizing graphs by Jacob Biesinger · 12 years ago
2049ae8 Merge branch 'genomix/fullstack_genomix' of https://code.google.com/p/hyracks into genomix/fullstack_genomix by Jacob Biesinger · 12 years ago
5c0184f Merge branch 'genomix/fullstack_genomix' of https://code.google.com/p/hyracks into genomix/fullstack_genomix by Jake Biesinger · 12 years ago
8eac65c Add data for few test cases by Jake Biesinger · 12 years ago
6a6f6bc Fix old merge leftovers by Jacob Biesinger · 12 years ago
b5c8428 test cases by AnbangX · 12 years ago
da3b802 Apply undirected graph algorithm in p2 by AnbangX · 12 years ago
0fd527e Merge branch 'genomix/fullstack_genomix' of https://code.google.com/p/hyracks into genomix/fullstack_genomix by Jake Biesinger · 12 years ago
8c8f194 test cases by Jake Biesinger · 12 years ago
5c31812 Add expected outputs for a few simple tests by Jake Biesinger · 12 years ago
15d0a8f Add sequences for simple test cases by Jake Biesinger · 12 years ago
8e4fbc3 test cases and fixes for H4 by Jake Biesinger · 12 years ago
1dea1ea PathNodeInitial uses 2 output bins instead of 3 by Jake Biesinger · 12 years ago
d31a1b4 use local maximum (not min) for h4 by Jake Biesinger · 12 years ago
93e9c22 debugging p4 and fix random seed issue by AnbangX · 12 years ago
98dae20 H4 complete; fix probBeingHead by Jake Biesinger · 12 years ago
21ad290 Code review with Jake on H4 by AnbangX · 12 years ago
b5e81d6 Merge branch 'anbangx/fullstack_genomix' into genomix/fullstack_genomix by AnbangX · 12 years ago
e6d7e7a code review with Jake by AnbangX · 12 years ago
26d9f46 Fix nodewritable merge logic by Jake Biesinger · 12 years ago
af826b9 gc optimize h4 reduce by Jake Biesinger · 12 years ago
64ae953 Add mergeInDir for kmers by Jake Biesinger · 12 years ago
3819c94 add stop condition for p2 by AnbangX · 12 years ago
74c645c send msg to bidirection in p2 by AnbangX · 12 years ago
e1dbea7 add subclass BasicVertex and fixing p2 by AnbangX · 12 years ago
d2e7e86 fix path merge flaws by AnbangX · 12 years ago genomix/one_direction v2.0
2a9137c finish p4 by AnbangX · 12 years ago
b7b66eb correct p4 by AnbangX · 12 years ago
730ed8a some updates by AnbangX · 12 years ago
342d65b add p4 for path merge by AnbangX · 12 years ago
7984e2b p3 path merge pass test by AnbangX · 12 years ago
46fc86e add test cases for removeBridge, removeTip and mergeBubble by AnbangX · 12 years ago
db5d564 WIP H4 1 mapper + 2 reducers by Jake Biesinger · 12 years ago
974c47f refactor h4 update mapper to use update messages by Jake Biesinger · 12 years ago
5adaeec add merge and update utility functions by Jake Biesinger · 12 years ago
3cda435 Remove tests using MRUnit (whose old API doesn't work with MultipleOutputs) by Jake Biesinger · 12 years ago
71ea5d2 Fix RFMerge and add tests by Jake Biesinger · 12 years ago
01ad7c2 Merge and fix FRMerge. RF still doesn't work. by Jake Biesinger · 12 years ago
244a3a8 Merge branch 'genomix/fullstack_genomix' into wbiesing/genomix/fullstack_genomix by Jake Biesinger · 12 years ago
ab171ba refactor kmer mergeNext and mergePre -> mergeFF etc. untested :) by Jake Biesinger · 12 years ago
1f0b7d5 refactor MergePaths message types to use directions and message types by Jake Biesinger · 12 years ago
a7216ac Add helper functions for mutating PositionListWritable's by Jake Biesinger · 12 years ago
3e70ffe PathNodeInitial updateable optimization by Jake Biesinger · 12 years ago
24e076f PathNodeInitial identifies nodes needing updates by Jake Biesinger · 12 years ago
1920264 refactor: MessageFlag is now MergeMessageFlag by Jake Biesinger · 12 years ago
7c1d870 H4 driver works with multipleOutputs by Jake Biesinger · 12 years ago
f20a7e7 Fix path separators in test cases by Jake Biesinger · 12 years ago
76cc619 simplify graphbuilding driver by Jake Biesinger · 12 years ago
86e8c3a simplify driver and test case for h4 graph building by Jake Biesinger · 12 years ago
87a1029 mergepaths uses multipleoutputs properly (prep for update code) by Jake Biesinger · 12 years ago
c0e90ce simplify hadoop graphbuilding test case by Jake Biesinger · 12 years ago
cc77cf7 add test cases for path merge and other data clean patterns by AnbangX · 12 years ago
2c41eb3 add remove in PositionListWritable and test by AnbangX · 12 years ago
f60ef35 add test for graph build by AnbangX · 12 years ago
1e43ac4 Merge branch 'genomix/fullstack_genomix' of https://code.google.com/p/hyracks into jianfeng/genomix by Jianfeng Jia · 12 years ago
acde177 add unmerged option in hyracks graph building by Jianfeng Jia · 12 years ago
ec499a1 remove tips initial by Jake Biesinger · 12 years ago
82b237b Better testing for initial path merge by Jake Biesinger · 12 years ago
09cf1d1 facilitate better testing via more constructors and proper hashing/equals by Jake Biesinger · 12 years ago
90752e7 non-path nodes are pushed to "complete" output by Jake Biesinger · 12 years ago
0d3ec57 update data clean 2013-06-06 by AnbangX · 12 years ago
fd8c69a update 2013-6-4 by Anbang Xu · 12 years ago
0ae1c4c add data clean by AnbangX · 12 years ago
57971b6 path node works for complex starts by Jake Biesinger · 12 years ago
bc7e15f Merge branch 'genomix/fullstack_genomix' into jianfeng/genomix by Jianfeng Jia · 12 years ago
0e69045 change iterator to for loop to save time. by Jianfeng Jia · 12 years ago
e0fa424 Update H4 to new graph style by Jake Biesinger · 12 years ago
5932b3b fix test case paths by Jake Biesinger · 12 years ago
bf8f525 Fix spelling by Jake Biesinger · 12 years ago
c49f7b9 add warning of huge overlap by Jianfeng Jia · 12 years ago
471f75c remove the "new" block. by Jianfeng Jia · 12 years ago
9ac3f6c reformat by Jake Biesinger · 12 years ago
03364d3 restore strangely deleted MergePaths code by Jake Biesinger · 12 years ago
d91b4fb Fix H3 test case by Jake Biesinger · 12 years ago
5215ff5 Updated base class for tests allows mutliple Test cases by Jake Biesinger · 12 years ago
79da38a clean code by Nan Zhang · 12 years ago
5d3d527 delete he pcommon by Nan Zhang · 12 years ago
37cc20b hadoop graph building completion by Nan Zhang · 12 years ago
e66c773 build graph by Nan Zhang · 12 years ago
eb8d72a Merge commit '951870ef4642f2003c4240eeef702fc90600fe77' into nanzhang/genomix by Nan Zhang · 12 years ago
3a26a3a merge with jianfeng-reverse by Nan Zhang · 12 years ago
631482f add first small test case by AnbangX · 12 years ago
30f28d0 new code for bi-direction graph build by AnbangX · 12 years ago
3931ef7 Broke test cases into base class plus small tests by Jake Biesinger · 12 years ago
a591f26 clean up code and add copyright header by JavierJia · 12 years ago
bf9401e increase default frameSize to 128K by Jianfeng Jia · 12 years ago
8040709 add log to watch the tuple size by Jianfeng Jia · 12 years ago
12b4280 Merge branch 'jianfeng/genomix' into jianfeng/genomix-reverse by Jianfeng Jia · 12 years ago