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asterix-gerrit.ics.uci.edu / hyracks / 270d47afe7b07b8c8b228e37ed6454b34199f990 / genomix / genomix-hyracks / src
  1. 270d47a add NlineInputFormat by Nan Zhang · 12 years ago
  2. 014dafc add graph building checking job by Nan Zhang · 12 years ago
  3. d980562 small clean for genomix-hyracks code by Nan Zhang · 12 years ago
  4. 251ecde harden hryacks scripts a bit by Jake Biesinger · 12 years ago
  5. fdf2c25 stable running with partition 4 by Nan Zhang · 12 years ago
  6. 4c7fca6 add hadoop conf into the genomix-hyracks scripts by Nan Zhang · 12 years ago
  7. 1e86fe0 choose the unmerge_graphbuilding for genomix-driver by Nan Zhang · 12 years ago
  8. 06b3fa5 fix jobGenDebruijnGraph output format by Jake Biesinger · 12 years ago
  9. 639c806 separate config from driver and pipeline setup by Jake Biesinger · 12 years ago
  10. 1aad534 Update GenomixJobConf: must specify the kmerLength, extends JobConf by Jake Biesinger · 12 years ago
  11. 4f05864 Refactor configuration for all jobs into global GenomixJobConf by Jake Biesinger · 12 years ago
  12. fc7d4b8 fix the positionWritable unionUpdate(), and add automatic test case by Nan Zhang · 12 years ago
  13. c00e007 add graphviz by Nan Zhang · 12 years ago
  14. a4e850d add license header for hyracks by Nan Zhang · 12 years ago
  15. 15306ff small modification by Nan Zhang · 12 years ago
  16. 4903be0 add expected file by Nan Zhang · 12 years ago
  17. df21153 complete hyracks graph building Junit4 Testing normalization by Nan Zhang · 12 years ago
  18. 3786935 hyracks graph building test complete. by Nan Zhang · 12 years ago
  19. 128eb0e Revert "update hyracks_genomix branch" by Nan Zhang · 12 years ago
  20. 9a664b7 update hyracks_genomix branch by Nan Zhang · 12 years ago
  21. c448987 refactoring edgelists; still some to do by Jake Biesinger · 12 years ago
  22. 034979c Partial refactor following edge type changes in NodeWritable by Jake Biesinger · 12 years ago
  23. 14df82f Merge branch 'nanzhang/hyracks_genomix' into genomix/fullstack_genomix by Nan Zhang · 12 years ago
  24. d282e07 argumented graph building pass test successfully by Nan Zhang · 12 years ago
  25. b965efd modify pom by Nan Zhang · 12 years ago
  26. 88d6cb5 modify the pom by Nan Zhang · 12 years ago
  27. 7f3e343 add the unmerged graph job by Nan Zhang · 12 years ago
  28. 399fc4a NodeWritable: refactor getListFromDir to getEdgeList by Jake Biesinger · 12 years ago
  29. 211d79c use direction flag as only public interface for nodewritable edges and threads by Jake Biesinger · 12 years ago
  30. 2065960 NodeWritable: Remove nodeIdList, refactor edges, add threads, add start/end reads by Jake Biesinger · 12 years ago
  31. e35e302 add driver by Nan Zhang · 12 years ago
  32. b4c6e09 Complete the Argumented graph building by Nan Zhang · 12 years ago
  33. 62a61f6 NodeWritable: refactor getListFromDir to getEdgeList by Jake Biesinger · 12 years ago
  34. 64f07c9 use direction flag as only public interface for nodewritable edges and threads by Jake Biesinger · 12 years ago
  35. 47fc29c NodeWritable: Remove nodeIdList, refactor edges, add threads, add start/end reads by Jake Biesinger · 12 years ago
  36. 8ded1a3 Clean genomix package and complete mergeing with Master by Anbang Xu · 12 years ago
  37. dfd2e50 fix genomix pom.xml's to use 0.2.10-SNAPSHOT by Jake Biesinger · 12 years ago
  38. 153c2d5 add expected results by Nan Zhang · 12 years ago
  39. ef306ca Fix case of AssembleKeyIntoNodeOperator by Nan Zhang · 12 years ago
  40. 5f57f54 small change by Nan Zhang · 12 years ago
  41. 19b758e ervoer testUtils by Nan Zhang · 12 years ago
  42. aeed6f0 delete the old driver by Nan Zhang · 12 years ago
  43. 852df2b complete the old code cleaning by Nan Zhang · 12 years ago
  44. 3e3144b cleanning continue by Nan Zhang · 12 years ago
  45. 7dc9400 clean the useless code for project by Nan Zhang · 12 years ago
  46. 6a7344b add 3 tips test cases for hyracks and add sequence file by Nan Zhang · 12 years ago
  47. 999f6ac add coverage for hyracks graph building by Nan Zhang · 12 years ago
  48. 53da888 code clean by Nan Zhang · 12 years ago
  49. 6ffdef2 add 3 SplitRepeat TestCases and fix the PositionListWitable: UnionUpdate HashSet by Nan Zhang · 12 years ago
  50. 016df5f finish the debugging by Nan Zhang · 12 years ago
  51. 0b9da1e Merge branch 'wbiesing/genomix/VKmers' into nanzhang/hyracks_genomix by Nan Zhang · 12 years ago
  52. c68e510 finish the debugging by Nan Zhang · 12 years ago
  53. 1259632 refactor KmerList -> VKmerList by Jake Biesinger · 12 years ago
  54. ceab4c1 Merge branch 'wbiesing/genomix/VKmers' into nanzhang/hyracks_genomix by Nan Zhang · 12 years ago
  55. 071ec27 modify the test parameter by Nan Zhang · 12 years ago
  56. 8379d7f add the read checker for hyracks by Nan Zhang · 12 years ago
  57. e90120f modify the test for graph building by Nan Zhang · 12 years ago
  58. 5a69e16 refactor graph building in hyracks using new genomix-data code by Nan Zhang · 12 years ago
  59. f2507bf debugging for hyracks by Nan Zhang · 12 years ago
  60. 8cea7fd new graph job built by Nan Zhang · 12 years ago
  61. 5b40242 build graph building job for hyracks by Nan Zhang · 12 years ago
  62. 0f33ece use new genomix-data by Nan Zhang · 12 years ago
  63. be0a038 modify the jobGeBrujinGraph by Nan Zhang · 12 years ago
  64. 3a0b4f2 fix key-value parser bug by Nan Zhang · 12 years ago
  65. a660b8b merge aggregater completes by Nan Zhang · 12 years ago
  66. 9b2c8b6 job generate frame complete by Nan Zhang · 12 years ago
  67. b811143 Refactor KmerBytesWritable to use internal length by Jake Biesinger · 12 years ago
  68. d8d3ccc local aggregator completed by Nan Zhang · 12 years ago
  69. 73ba093 delete the contrail package by Nan Zhang · 12 years ago
  70. ad0a538 complete the dataflow of hyracks by Nan Zhang · 12 years ago
  71. 4d50d8a Merge branch 'genomix/fullstack_genomix' into nanzhang/hyracks_genomix by Nan Zhang · 12 years ago
  72. 95138a4 hyracks contrail graph building partial completing by Nan Zhang · 12 years ago
  73. 0c644f4 Mapper passes test by Anbang Xu · 12 years ago
  74. b14e7e6 Update for changing graph by Anbang Xu · 12 years ago
  75. 8dbe728 refactor 'size' to 'kmerByteSize' in KmerBytesWritable by Anbang Xu · 12 years ago
  76. f7fc945 refactor 'UniqueKey' to 'NodeId' by Anbang Xu · 12 years ago
  77. 6350b0f some changes in ParserFactory by Anbang Xu · 12 years ago
  78. 1a02870 add ReadsKeyValueParserFactory for new graph using for read HDFS by Anbang Xu · 12 years ago
  79. 871743c add IntermediateNodeWritable and KmerListWritable by Anbang Xu · 12 years ago
  80. c642eeb new graph driver by Anbang Xu · 12 years ago
  81. 970c74f move old key/value class to oldtype folder by Anbang Xu · 12 years ago
  82. acde177 add unmerged option in hyracks graph building by Jianfeng Jia · 12 years ago
  83. bc7e15f Merge branch 'genomix/fullstack_genomix' into jianfeng/genomix by Jianfeng Jia · 12 years ago
  84. 0e69045 change iterator to for loop to save time. by Jianfeng Jia · 12 years ago
  85. bf8f525 Fix spelling by Jake Biesinger · 12 years ago
  86. c49f7b9 add warning of huge overlap by Jianfeng Jia · 12 years ago
  87. 471f75c remove the "new" block. by Jianfeng Jia · 12 years ago
  88. eb8d72a Merge commit '951870ef4642f2003c4240eeef702fc90600fe77' into nanzhang/genomix by Nan Zhang · 12 years ago
  89. 3a26a3a merge with jianfeng-reverse by Nan Zhang · 12 years ago
  90. a591f26 clean up code and add copyright header by JavierJia · 12 years ago
  91. bf9401e increase default frameSize to 128K by Jianfeng Jia · 12 years ago
  92. 8040709 add log to watch the tuple size by Jianfeng Jia · 12 years ago
  93. 12b4280 Merge branch 'jianfeng/genomix' into jianfeng/genomix-reverse by Jianfeng Jia · 12 years ago
  94. 5ba19e2 add more information for larger data debug by Jianfeng Jia · 12 years ago genomix/unidirection
  95. 8a50889 fix outputKmerFactory racing problem by Jianfeng Jia · 12 years ago
  96. 33dc862 fix debugNc script by JavierJia · 12 years ago
  97. dba2ebf Merge branch 'jianfeng/genomix' into jianfeng/genomix-reverse by Jianfeng Jia · 12 years ago
  98. 22616cf fixed the racing problem by Jianfeng Jia · 12 years ago
  99. 763ee99 fix builder.reset bug by JavierJia · 12 years ago
  100. aa985fe Merge branch 'jianfeng/genomix' into jianfeng/genomix-reverse by Jianfeng Jia · 12 years ago