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asterix-gerrit.ics.uci.edu / hyracks / 1e86fe0ef88d6cae9525a962231f51412046a8f6 / genomix / genomix-pregelix / data
  1. ca15771 UnrollTandemRepeat is completed by Anbang Xu · 12 years ago
  2. b37b705 Add UnRollTandemRepeat. TODO: add the corresponding MSG and update edges by Anbang Xu · 12 years ago
  3. 5e01f76 Adapt RemoveLowCoverageVertex to new graph structure. Finally, all the patterns are adapted to new graph by Anbang Xu · 12 years ago
  4. e7856d5 Adapt ScaffoldingVertex to new graph structure by Anbang Xu · 12 years ago
  5. 6212780 BTS almost done and wait for EdgeListWritable[dir].getReadIds(Key key) by Anbang Xu · 12 years ago
  6. 0217e7e Adapt SplitRepeatVertex to new graph structure. TODO: test AdjSplitRepeat by Anbang Xu · 12 years ago
  7. 37a8489 Adapt MergeBubbleVertex to new graph structure. TODO: check if bubble flip and merge all metadata except kmer by Anbang Xu · 12 years ago
  8. 977a413 Adapt BridgeAddVertex and BridgeRemoveVertex to new graph structure by Anbang Xu · 12 years ago
  9. 4370b2b adapt TipAddVertex and TipRemoveVertex to new graph structure by Anbang Xu · 12 years ago
  10. 112cdf7 Adapt MapReduceVertex and P4 to new graph structure by Anbang Xu · 12 years ago
  11. e7885ee Pregel TestSuite is completed by Anbang Xu · 12 years ago
  12. 6f88379 save current state and prepare to clean up hadoop test result by Anbang Xu · 12 years ago
  13. 52bda5c add new graph result to PathMergeTestSet by Anbang Xu · 12 years ago
  14. be39f91 Add AverageCoverage to graph construction(hadoop) and make graphviz more pretty by Anbang Xu · 12 years ago
  15. ac6b1a6 RemoveBridge pass test and add RemoveLowCoverage and Scaffolding by Anbang Xu · 12 years ago
  16. 4a5ee49 Hadoop TestSuite is completed and P2 pass test by Anbang Xu · 12 years ago
  17. 18c032a make TestSuite for graph building(hadoop) by Anbang Xu · 12 years ago
  18. 6ad60bf fix bug in readFields of KmerListWritable by Anbang Xu · 12 years ago
  19. 6d8afff fix RemoveBridgeVertex and update for merge by Anbang Xu · 12 years ago
  20. aac7732 SimpleSplitRepeat is completed. An issue in graph building(hadoop): KmerList.appendList() doesn't check existed element by Anbang Xu · 12 years ago
  21. 0049eac refactor 'NaiveAlgorithm' to 'P1' and add test case for SplitRepeat by Anbang Xu · 12 years ago
  22. 29ebdc8 Map/Reduce version in pregel is completed by Anbang Xu · 12 years ago
  23. a5e97c7 p4 pass test by Anbang Xu · 12 years ago
  24. 4416d3c debugging p4 by Anbang Xu · 12 years ago
  25. c71a2d3 removeBridge pass tests by Anbang Xu · 12 years ago Alpha Alpha-Graph-v2.0
  26. b1ccba9 p4 pass test by Anbang Xu · 12 years ago
  27. b3c4a2b removeTip pass all the tests by Anbang Xu · 12 years ago
  28. f947fb8 add test suite case for removetip/removebridge/pathmerge by Anbang Xu · 12 years ago
  29. da3b802 Apply undirected graph algorithm in p2 by AnbangX · 12 years ago
  30. e6d7e7a code review with Jake by AnbangX · 12 years ago
  31. 46fc86e add test cases for removeBridge, removeTip and mergeBubble by AnbangX · 12 years ago
  32. cc77cf7 add test cases for path merge and other data clean patterns by AnbangX · 12 years ago
  33. f60ef35 add test for graph build by AnbangX · 12 years ago
  34. 631482f add first small test case by AnbangX · 12 years ago
  35. cfc37ee update new code and test in ipubmed by AnbangX · 12 years ago
  36. ef51a0a reset maxIteration by AnbangX · 12 years ago
  37. f11a472 add two step of log algorithm version by AnbangX · 12 years ago
  38. 9d5de1e add num-iteration by anbangx · 12 years ago
  39. b7c1b11 Finish verifying the correctness of Naive Algorithm and Log Algorithm by anbangx · 12 years ago
  40. f5ff29d change folder name to edu.uci.ics.genomix.pregelix by anbangx · 12 years ago
  41. 9ce8742 change code format of naive algorithm and delete some extra test code by anbangx · 12 years ago
  42. 8e25fd9 add client/drive and some test files by anbangx · 12 years ago
  43. e125a7e add small data file by anbangx · 12 years ago
  44. 562c2fc by anbangx · 12 years ago
  45. 322e6d6 update by anbangx · 12 years ago
  46. 2e1af00 add a folder to store test file by anbangx · 12 years ago
  47. a1bb02a add test file by anbangx · 12 years ago
  48. 648cedf Update LogAlgorithm for merging graph by anbangx · 12 years ago
  49. 7a14a81 Modify to SequenceFile by anbangx · 12 years ago
  50. f61ba4c Update genomix-pregelix by anbangx · 12 years ago