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asterix-gerrit.ics.uci.edu / hyracks / 153c2d516a1ae5e50eaefe697e5d0fa1c5e11a6c / genomix / genomix-data / src / test / java
  1. 8edaabd Add fracDissimilar to VKmer by Jake Biesinger · 12 years ago
  2. 3fc4fef Please enter the commit message for your changes. Lines starting by Nan Zhang · 12 years ago
  3. 8e8e99f Merge branch 'nanzhang/hyracks_genomix' into genomix/fullstack_genomix by Nan Zhang · 12 years ago
  4. 9dc35e0 fix merge test case by Jake Biesinger · 12 years ago
  5. 078e20a catch attempts at merging empty kmers by Jake Biesinger · 12 years ago
  6. b072b75 Add edit distance computation for VKmers by Jake Biesinger · 12 years ago
  7. 6981f1c adapt graph construction(hadoop) to VKmer by Anbang Xu · 12 years ago
  8. def02ee clean up interface for VKmer setByRead by Jake Biesinger · 12 years ago
  9. 79c5ccf Merge branch 'wbiesing/genomix/VKmers' into genomix/fullstack_genomix by Jake Biesinger · 12 years ago
  10. 39f1cf1 Merge commit '07acebba2c4470834919a82092faec0c982411e5' into nanzhang/hyracks_genomix by Nan Zhang · 12 years ago
  11. 0b9da1e Merge branch 'wbiesing/genomix/VKmers' into nanzhang/hyracks_genomix by Nan Zhang · 12 years ago
  12. c68e510 finish the debugging by Nan Zhang · 12 years ago
  13. ff02e22 Use VKmers in lists by Jake Biesinger · 12 years ago
  14. 1259632 refactor KmerList -> VKmerList by Jake Biesinger · 12 years ago
  15. 34d3d73 there is an issue in KmerListWritable and try to fix it by Anbang Xu · 12 years ago
  16. 5eaa799 Merge commit '94e075b5c3db9aa613ef61c2581430a143b17bc8' into nanzhang/hyracks_genomix by Nan Zhang · 12 years ago
  17. 94e075b update for merge by Anbang Xu · 12 years ago
  18. 6ee7bdf fix HashSet in SplitRepeat by Anbang Xu · 12 years ago
  19. 0049eac refactor 'NaiveAlgorithm' to 'P1' and add test case for SplitRepeat by Anbang Xu · 12 years ago
  20. d57d7e5 add CreatedVertex and ConnectedTable by Anbang Xu · 12 years ago
  21. 844d774 update the genomix-data by Nan Zhang · 12 years ago
  22. d94f5f9 refactor 'BasicPathMergeVertex' to 'BasicGraphCleanVertex', make it more general by Anbang Xu · 12 years ago
  23. 29ebdc8 Map/Reduce version in pregel is completed by Anbang Xu · 12 years ago
  24. d6276e7 p2 pass test by Anbang Xu · 12 years ago
  25. 0f33ece use new genomix-data by Nan Zhang · 12 years ago
  26. 9e00650 p2 pass all the tests except 9 by Anbang Xu · 12 years ago
  27. d253d8f fix mergeWithRFKmer by Anbang Xu · 12 years ago
  28. a5e97c7 p4 pass test by Anbang Xu · 12 years ago
  29. 4416d3c debugging p4 by Anbang Xu · 12 years ago
  30. 84e385f Try to add globe kmerSize but fail in testing by Anbang Xu · 12 years ago
  31. bcf5a70 add hadoop test and keep both bin and txt by Anbang Xu · 12 years ago
  32. 08c7d2d change KmerListWritable and NodeWritable to new construction for new graph-'Kmer-Base system as key' by Anbang Xu · 12 years ago
  33. aef7aaa meatier test case and tweaks for PositionWritable by Jake Biesinger · 12 years ago
  34. a9eafe7 Make PositionListWritable test code by Anbang Xu · 12 years ago
  35. 6010f35 Make the PositionWritable and Pass the test by Anbang Xu · 12 years ago
  36. de2424c begin new graph building by Anbang Xu · 12 years ago
  37. 970c74f move old key/value class to oldtype folder by Anbang Xu · 12 years ago
  38. 46fc86e add test cases for removeBridge, removeTip and mergeBubble by AnbangX · 12 years ago
  39. 71ea5d2 Fix RFMerge and add tests by Jake Biesinger · 12 years ago
  40. 01ad7c2 Merge and fix FRMerge. RF still doesn't work. by Jake Biesinger · 12 years ago
  41. ab171ba refactor kmer mergeNext and mergePre -> mergeFF etc. untested :) by Jake Biesinger · 12 years ago
  42. 2c41eb3 add remove in PositionListWritable and test by AnbangX · 12 years ago
  43. 5033f6f Update comment. by Jianfeng Jia · 12 years ago
  44. 587ddb7 finished merge pre and merge next test by Jianfeng Jia · 12 years ago
  45. f14c403 add mergeNext function to kmerWritable by Jianfeng Jia · 12 years ago
  46. 1d11e0a finish position test by JavierJia · 12 years ago
  47. fe1391a passed genomix-data test by JavierJia · 12 years ago
  48. ba0d0d8 clean up kmerWritable by JavierJia · 12 years ago
  49. 3c3f2b7 Change return value of shiftKmer from bitmap to genecode by JavierJia · 12 years ago
  50. 483934a add getSubKmer function by JavierJia · 12 years ago
  51. 0c37dd0 make genomix-hadoop genomix-hyracks compilable by JavierJia · 12 years ago
  52. be165dd split Kmer into fixsize Kmer and variablesize VKmer by JavierJia · 12 years ago
  53. 48a21c3 make genomix-data test passed by JavierJia · 12 years ago
  54. 99641ad fix the bugs of mergeTwoKmer when nextK mod 4 == 0 by Jianfeng Jia · 12 years ago
  55. 74b72ca change fix bytes array to flexible bytes with offset and length in KmerUtil by jianfeng.jia@gmail.com · 12 years ago
  56. cdc5917 upload the graph of the test case by anbangx · 12 years ago
  57. 14e6742 add shiftKmer into KmerUtil by jianfeng.jia@gmail.com · 12 years ago
  58. 5842ee3 add KmerUtil for merge or join operation by jianfeng.jia@gmail.com · 12 years ago
  59. d5b6dc7 add reversed kmer option by jianfeng.jia@gmail.com · 12 years ago
  60. 7b6a3c7 change to genomix-data by jianfeng.jia@gmail.com · 12 years ago